FC868724

Overview
NameFC868724
Unique NameFC868724
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length661
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868724 vs. ExPASy Swiss-Prot
Match: GL124_ORYSJ (Putative germin-like protein 12-4 OS=Oryza sativa subsp. japonica GN=Os12g0155000 PE=3 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 4.354e-27
Identity = 75/191 (39.27%), Postives = 106/191 (55.50%), Query Frame = 3
Query:   39 ADFDNLQDICPTDTTKKQTIFINGLPCKSPDRIFASDF-KSTKLRDAGDTDKFPY-SSLTLLTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNR-----QVFQVMLKAGEVCVFPRGLLHFGFNVGYEF-ATVFSVLNSQNPGVVSISDAAFSDFDTI-DDLVRKFISI 584
            +D   LQD C  D  K   + +NGLPCK    +   DF  +  L    DT K    S++TL+      GLNTL +S+AR D    G   PHTHPRA+E+L V +G +  GFV +N+     ++F   L  G+V VFP+GL+HF FN  Y+  A   + L+SQNPG ++I++A F     I DD++ K   +
Sbjct:   23 SDPSPLQDFCVAD--KHSPVRVNGLPCKDAKDVSVDDFFLAANLDKPMDTTKSKAGSNVTLINVMKLAGLNTLSISMARIDYAPKGQNPPHTHPRATEILTVLEGSLYVGFVTSNQANRENKLFTKTLNKGDVFVFPQGLIHFQFNPSYDKPAVAIAALSSQNPGAITIANAVFGSHPPISDDVLAKAFQV 211          
BLAST of FC868724 vs. ExPASy Swiss-Prot
Match: GL83_ORYSJ (Germin-like protein 8-3 OS=Oryza sativa subsp. japonica GN=GER2 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.686e-27
Identity = 71/179 (39.66%), Postives = 105/179 (58.66%), Query Frame = 3
Query:   54 LQDICPTDTTKKQTIFINGLPCKSPDRIFASDF-KSTKLRDAGDTDKFPYSSLTLLTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTN-RQVFQVMLKAGEVCVFPRGLLHFGFNVGY-EFATVFSVLNSQNPGVVSISDAAFSDFDTIDD--LVRKF 575
            LQD C  D      + +NG PCK+P  + + DF  + K     +T     S++T L   +FPGLNTLG+S+AR D    G+  PH HPRA+E+L V +G +  GFV +N  ++F  ++  G+V VFP+ ++HF  N+ + + A   S L+SQNPGV++I+ A F     I D  LV+ F
Sbjct:   29 LQDFCVADMASP--VRVNGFPCKNPMNVTSDDFFNAAKFDMPRNTMNKVGSNVTNLNVINFPGLNTLGISLARIDYAPMGVNPPHVHPRATELLTVLEGTLYVGFVTSNPNRLFSKVVHKGDVFVFPKAMIHFQMNLDHNKPAVAQSALSSQNPGVITIASAIFGSTPPISDDVLVKAF 205          
BLAST of FC868724 vs. ExPASy Swiss-Prot
Match: GLT1_ARATH (Germin-like protein subfamily T member 1 OS=Arabidopsis thaliana GN=GLP1 PE=2 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 7.426e-27
Identity = 74/187 (39.57%), Postives = 97/187 (51.87%), Query Frame = 3
Query:    6 IICFTCIGFRRADFDNLQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLLTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSDFDTIDDLV 566
            + C   I    +D D LQD C  D   K +  ING PCKS   + ASDF  + L    DT      ++       FPGLNTLG+S+   +L   G+  PH HPRA+E+  V +G V  GF+ TN  +F  +L AGE  V PRGL+HF +NVG   A + +  NSQ PG V +    F     I + V
Sbjct:   17 MFCLFVIPSLSSDSDPLQDFCVGDL--KASASINGFPCKSA--VSASDFFYSGLGGPLDTSNPNGVTVAPANVLTFPGLNTLGISMNNVELAPGGVNPPHLHPRATEVGTVIEGSVFVGFLSTNNTLFSKVLNAGEAFVIPRGLVHFQWNVGQVKARMITAFNSQLPGAVVLPSTLFGSKPEIPNAV 199          
BLAST of FC868724 vs. ExPASy Swiss-Prot
Match: GL84_ORYSJ (Germin-like protein 8-4 OS=Oryza sativa subsp. japonica GN=GER1 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.426e-27
Identity = 71/181 (39.23%), Postives = 105/181 (58.01%), Query Frame = 3
Query:   54 LQDICPTDTTKKQTIFINGLPCKSPDRIFASDF-KSTKLRDAGDTDKFPYSSLTLLTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTN-RQVFQVMLKAGEVCVFPRGLLHFGFNVGY-EFATVFSVLNSQNPGVVSISDAAFSDFDTI-DDLVRKFISI 584
            LQD C  D   K  + +NG PCK+P  + + DF  + K      T     S++T L   +FPGLNTLG+S+AR D    G+  PH HPRA+E+L V +G +  GFV +N  ++F  ++  G+  VFP+ ++HF  N+ + + A   S LNSQNPGV++I+ A F     I DD++ K   +
Sbjct:   29 LQDFCVADM--KSPVRVNGFPCKNPMEVNSDDFFNAAKFDMPRSTMNKVGSNVTNLNVLNFPGLNTLGISLARIDYAPLGVNPPHIHPRATELLTVLEGTLYVGFVTSNPNRLFSKVVHKGDTFVFPKAMIHFQMNLDHNKPAVAQSSLNSQNPGVITIASAVFGSKPPISDDVLTKAFQV 207          
BLAST of FC868724 vs. ExPASy Swiss-Prot
Match: GL36_ORYSJ (Germin-like protein 3-6 OS=Oryza sativa subsp. japonica GN=Os03g0694000 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 9.699e-27
Identity = 68/167 (40.72%), Postives = 94/167 (56.29%), Query Frame = 3
Query:   33 RRADFDNLQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPY-SSLTLLTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFV---DTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSI 521
            R  D D LQD C  D   K T+  NG  CK           S+K+   GD +  P  S++T L  A++PG+NTLG+S+ R D    G   PH HPRA+E+  V +G ++ G +   DT  + +  +++AGE  V PRGL+HF FNVG   AT+    NSQNPG+V +
Sbjct:   27 RATDADPLQDFCVADLDSKVTV--NGHACKPASAAGDEFLFSSKIATGGDVNANPNGSNVTELDVAEWPGVNTLGVSMNRVDFAPGGTNPPHVHPRATEVGIVLRGELLVGIIGTLDTGNRYYSKVVRAGETFVIPRGLMHFQFNVGKTEATMVVSFNSQNPGIVFV 191          
BLAST of FC868724 vs. ExPASy Swiss-Prot
Match: GL35_ORYSJ (Germin-like protein 3-5 OS=Oryza sativa subsp. japonica GN=Os03g0693900 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.161e-26
Identity = 67/167 (40.12%), Postives = 94/167 (56.29%), Query Frame = 3
Query:   33 RRADFDNLQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPY-SSLTLLTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFV---DTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSI 521
            R  D D LQD C  D   + T+  NG  CK           S+K+   GD +  P  S++T L  A++PG+NTLG+S+ R D    G   PH HPRA+E+  V +G ++ G +   DT  + +  +++AGE  V PRGL+HF FNVG   AT+    NSQNPG+V +
Sbjct:   25 RATDADPLQDFCVADLNSEVTV--NGHACKPASAAGDEFLFSSKIATGGDVNANPNGSNVTELDVAEWPGVNTLGVSMNRVDFAPGGTNPPHVHPRATEVGIVLRGELLVGIIGTLDTGNRYYSKVVRAGETFVIPRGLMHFQFNVGKTEATMVVSFNSQNPGIVFV 189          
BLAST of FC868724 vs. ExPASy Swiss-Prot
Match: OXO2_HORVU (Oxalate oxidase 2 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.822e-26
Identity = 68/164 (41.46%), Postives = 95/164 (57.93%), Query Frame = 3
Query:   39 ADFDNLQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLLTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKG---VVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSI 521
            +D D LQD C  D   K  + +NG PCK           S+KL  AG+T     S++T L  A++PG NTLG+S+ R D    G   PH HPRA+E+  V KG   V I G +D+  +++  +++AGE  + PRGL+HF FNVG   A++    NSQNPG+V +
Sbjct:   24 SDPDPLQDFCVADLDGK-AVSVNGHPCKPMSEAGDDFLFSSKLAKAGNTSTPNGSAVTELDVAEWPGTNTLGVSMNRVDFAPGGTNPPHVHPRATEIGIVMKGELLVGILGSLDSGNKLYSRVVRAGETFLIPRGLMHFQFNVGKTEASMVVSFNSQNPGIVFV 186          
BLAST of FC868724 vs. ExPASy Swiss-Prot
Match: GL21_ARATH (Germin-like protein subfamily 2 member 1 OS=Arabidopsis thaliana GN=GLP4 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.822e-26
Identity = 68/166 (40.96%), Postives = 93/166 (56.02%), Query Frame = 3
Query:   39 ADFDNLQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLLTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAF 536
            AD D LQD+C  D      I ING PCK    + ++DF S  L   G T+    + +T       PGLNTLG+S++R D    G+  PHTHPRA+E++FV +G +  GF+ T  ++    LK G+V  FP+GL+HF  N G   A+V +  NSQ PG  S+    F
Sbjct:   23 ADPDMLQDLCVADLPSG--IKINGFPCKDAATVTSADFFSQGLAKPGLTNNTFGALVTGANVMTIPGLNTLGVSLSRIDYAPGGLNPPHTHPRATEVVFVLEGTLDVGFLTTANKLISQSLKKGDVFAFPKGLVHFQKNNGDVPASVIAAFNSQLPGTQSLGATLF 186          
BLAST of FC868724 vs. ExPASy Swiss-Prot
Match: GL12_ORYSJ (Germin-like protein 1-2 OS=Oryza sativa subsp. japonica GN=Os01g0705100 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.822e-26
Identity = 66/167 (39.52%), Postives = 95/167 (56.89%), Query Frame = 3
Query:   39 ADFDNLQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLLTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFS 539
            AD   LQDIC  D   +    ++G PCK    + + DF    +  A  T      + T  T + FPGLNTLGLS+ RTDL   G+  PH+HPRASE++ V  G V+ GF     ++F  +++  E+ V PRGL HF  NVG   A+  ++ +SQ+PG+V+ + A F+
Sbjct:   29 ADSPPLQDICVADL--RAATAVDGFPCKPTASVVSDDFFCDAIVQAPSTSNPFGVNSTRATVSAFPGLNTLGLSITRTDLAPGGLNPPHSHPRASELVLVLSGEVMVGFTTAANRLFSKVVREKELFVVPRGLQHFQLNVGAGNASFVAMFDSQSPGLVTPTFALFA 193          
BLAST of FC868724 vs. ExPASy Swiss-Prot
Match: GL123_ORYSJ (Putative germin-like protein 12-3 OS=Oryza sativa subsp. japonica GN=Os12g0154900 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.822e-26
Identity = 74/191 (38.74%), Postives = 104/191 (54.45%), Query Frame = 3
Query:   39 ADFDNLQDICPTDTTKKQTIFINGLPCKSPDRIFASDF-KSTKLRDAGDTDKFPY-SSLTLLTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNR-----QVFQVMLKAGEVCVFPRGLLHFGFNVGYEF-ATVFSVLNSQNPGVVSISDAAFSDFDTI-DDLVRKFISI 584
            +D   LQD+C  D  K   + +NG PCK    +   DF  +  L    D  K    S++TL+      GLNTLG+S+AR D    G   PHTHPRA+E+L V +G +  GFV +N+     ++F   L  G+V VFP GL+HF FN  Y+  A     L+SQNPG ++I++A F     I DD++ K   +
Sbjct:   23 SDPSPLQDLCVAD--KNSPVRVNGFPCKDAKDVSVDDFFLAANLDKPMDITKSKAGSNVTLINVMKLAGLNTLGISMARIDYAPKGQNPPHTHPRATEILSVIEGSLYVGFVTSNQANGENKLFTKTLNKGDVFVFPEGLIHFQFNPSYDKPAAAIVALSSQNPGAITIANAVFGSNPPISDDVLAKAFQV 211          
The following BLAST results are available for this feature:
BLAST of FC868724 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GL124_ORYSJ4.354e-2739.27Putative germin-like protein 12-4 OS=Oryza sativa ... [more]
GL83_ORYSJ5.686e-2739.66Germin-like protein 8-3 OS=Oryza sativa subsp. jap... [more]
GLT1_ARATH7.426e-2739.57Germin-like protein subfamily T member 1 OS=Arabid... [more]
GL84_ORYSJ7.426e-2739.23Germin-like protein 8-4 OS=Oryza sativa subsp. jap... [more]
GL36_ORYSJ9.699e-2740.72Germin-like protein 3-6 OS=Oryza sativa subsp. jap... [more]
GL35_ORYSJ2.161e-2640.12Germin-like protein 3-5 OS=Oryza sativa subsp. jap... [more]
OXO2_HORVU2.822e-2641.46Oxalate oxidase 2 OS=Hordeum vulgare PE=2 SV=1[more]
GL21_ARATH2.822e-2640.96Germin-like protein subfamily 2 member 1 OS=Arabid... [more]
GL12_ORYSJ2.822e-2639.52Germin-like protein 1-2 OS=Oryza sativa subsp. jap... [more]
GL123_ORYSJ2.822e-2638.74Putative germin-like protein 12-3 OS=Oryza sativa ... [more]

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Properties
Property NameValue
Genbank descriptionC31004A06EF AbioticL1 Citrus clementina cDNA clone C31004A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868724 ID=FC868724; Name=FC868724; organism=Citrus clementina; type=EST; length=661bp
TGTACATAATCTGCTTCACTTGCATTGGCTTCCGCCGGGCAGATTTTGAT
AATCTTCAGGATATCTGCCCAACTGATACAACTAAGAAACAAACCATTTT
CATTAATGGTTTGCCATGCAAGAGTCCAGACCGCATATTTGCTTCGGATT
TCAAGTCCACGAAACTAAGAGATGCCGGCGACACAGATAAATTTCCCTAT
TCCTCATTGACCCTCCTCACTGCTGCAGATTTCCCAGGCCTTAACACTCT
TGGCCTTTCCGTTGCTAGAACTGACCTTGATGTGGATGGCATGGTGGTGC
CTCATACTCACCCTAGAGCCTCAGAGATGCTCTTCGTTTTCAAAGGTGTT
GTGATTGCTGGTTTTGTTGACACCAACAGACAGGTTTTCCAGGTAATGCT
TAAAGCAGGAGAAGTGTGTGTGTTTCCCAGGGGTCTGCTACACTTCGGCT
TTAACGTTGGTTATGAGTTCGCAACTGTTTTTTCAGTGCTAAACAGCCAG
AATCCTGGGGTGGTCAGCATCAGTGATGCCGCGTTCTCCGATTTCGATAC
CATTGACGACCTTGTGAGAAAATTCATTTCAATTTCTGCGTTGGACGAAT
AGAGTATCAGAAATGTCACACTTCCNAAGATTTACAAGCTTAAAATCACG
AAACACCACAT
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