FC868724

Overview
NameFC868724
Unique NameFC868724
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length661
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868724 vs. ExPASy Swiss-Prot
Match: GLT2_ARATH (Germin-like protein subfamily T member 2 OS=Arabidopsis thaliana GN=At1g18980 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.814e-26
Identity = 74/187 (39.57%), Postives = 99/187 (52.94%), Query Frame = 3
Query:    6 IICFTCIGFRRADFDNLQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLLTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSDFDTIDDLV 566
            +IC   I    +D D LQD C  D   K +  ING PCKS   + ASDF  + L    +T      +++      FPGLNTLGLS+   +    G+  PH+HPRA+E   V +G V  GF+ TN  +F  +L AGE+ V PRGL+HF +NVG   A + +  NSQ PG   +    F    TI + V
Sbjct:   17 VICVFVIPSLSSDSDPLQDFCVGDL--KASPSINGFPCKSS--VSASDFFFSGLGGPLNTSTPNGVAVSPANVLTFPGLNTLGLSMNNVEFAPGGVNPPHSHPRATEAGVVIEGSVFVGFLTTNNTLFSKVLNAGEMFVVPRGLVHFQWNVGKVKARLITSFNSQLPGSAVLPSTLFGSNPTIPNAV 199          
BLAST of FC868724 vs. ExPASy Swiss-Prot
Match: GL34_ORYSJ (Putative germin-like protein 3-4 OS=Oryza sativa subsp. japonica GN=Os03g0693800 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.814e-26
Identity = 67/167 (40.12%), Postives = 93/167 (55.69%), Query Frame = 3
Query:   33 RRADFDNLQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPY-SSLTLLTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFV---DTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSI 521
            R  D D LQD C  D   K T+  NG  CK           S+K+   GD +  P  S++T L  A++PG+NTLG+S+ R D    G   PH HPRA+E+  V +G ++ G +   D   + +  +++AGE  V PRGL+HF FNVG   AT+    NSQNPG+V +
Sbjct:   27 RATDADPLQDFCVADLDSKVTV--NGHACKPASAAGDEFLFSSKIATGGDVNANPNGSNVTELDVAEWPGVNTLGVSMNRVDFAPGGTNPPHVHPRATEVGIVLRGELLVGIIGTLDMGNRYYSKVVRAGETFVIPRGLMHFQFNVGKTEATMVVSFNSQNPGIVFV 191          
BLAST of FC868724 vs. ExPASy Swiss-Prot
Match: GL24_ARATH (Germin-like protein subfamily 2 member 4 OS=Arabidopsis thaliana GN=GLP10 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.287e-26
Identity = 72/176 (40.91%), Postives = 96/176 (54.55%), Query Frame = 3
Query:   42 DFDNLQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLLTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVG-YEFATVFSVLNSQNPGVVSISDAAFSDFDTIDDLV 566
            D D LQD+C  D T    I +NG  CK    I ASDF    +      +    S++T        GLNTLG+S+AR D    G+  PHTHPRA+E++FV +G +  GF+ T  ++F   +K GEV VFPRGL+H+  N    + A+V S  NSQ PG  SI+   F+    I D V
Sbjct:   23 DPDTLQDLCVADRTSG--IKVNGFTCKPESNITASDFFFAGIGKPAVVNNTVGSAVTGANVEKIAGLNTLGVSLARIDYAPGGLNPPHTHPRATEVIFVLEGELDVGFITTANKLFAKTVKKGEVFVFPRGLIHYQKNNDKAKPASVISAFNSQLPGTQSIAATLFTATPAIPDHV 196          
BLAST of FC868724 vs. ExPASy Swiss-Prot
Match: GL33_ORYSJ (Germin-like protein 3-3 OS=Oryza sativa subsp. japonica GN=Os03g0693700 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.072e-25
Identity = 67/167 (40.12%), Postives = 93/167 (55.69%), Query Frame = 3
Query:   33 RRADFDNLQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPY-SSLTLLTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFV---DTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSI 521
            R  D D LQD C  D   + T+  NG PCK           S++L   GD +  P  S++T L  A +PG+NTLG+S+ R D    G   PH HPRA+E+  V +G ++ G +   DT  + +  +++ GE  V PRGL+HF FNVG   AT+    NSQNPG+V +
Sbjct:   25 RANDPDPLQDFCVADLDSEVTL--NGYPCKPTPAAGDEFLFSSRLATGGDVNANPNGSNVTQLDVAGWPGVNTLGVSMNRIDFAPGGTNPPHVHPRATEVGIVLRGELLVGIIGSLDTGNRYYSRVVRGGETFVIPRGLMHFQFNVGKTEATMVVSFNSQNPGIVFV 189          
BLAST of FC868724 vs. ExPASy Swiss-Prot
Match: GL812_ORYSJ (Germin-like protein 8-12 OS=Oryza sativa subsp. japonica GN=Os08g0231400 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.401e-25
Identity = 69/181 (38.12%), Postives = 105/181 (58.01%), Query Frame = 3
Query:   54 LQDICPTDTTKKQTIFINGLPCKSPDRIFASDF-KSTKLRDAGDTDKFPYSSLTLLTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTN-RQVFQVMLKAGEVCVFPRGLLHFGFNVGYEF-ATVFSVLNSQNPGVVSISDAAFSDFDTI-DDLVRKFISI 584
            LQD C  D      + +NG  CK+P  + + DF  + K     +T     S++T L   +FPGLNTLG+S+AR D    G+  PH HPRA+E+L V +G +  GFV +N  ++F  ++  G+V VFP+ ++HF  N+ ++  A   S L+SQNPGV++I+ A F     I DD++ K   +
Sbjct:   29 LQDFCVADMNSP--VRVNGFACKNPMDVSSEDFFNAAKFDMPRNTFNKLGSNVTNLNVMEFPGLNTLGISLARIDYAPMGVNPPHIHPRATELLTVLEGTLYVGFVTSNPNKLFSKVVCKGDVFVFPKAMIHFQMNLDHDKPAVAQSALSSQNPGVITIASAVFGSQPPISDDVLTKAFQV 207          
BLAST of FC868724 vs. ExPASy Swiss-Prot
Match: GL31_ORYSJ (Germin-like protein 3-1 OS=Oryza sativa subsp. japonica GN=Os03g0179000 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.829e-25
Identity = 75/194 (38.66%), Postives = 102/194 (52.58%), Query Frame = 3
Query:   36 RADFDNLQDICPTDT---TKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLLT--AADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEF-ATVFSVLNSQNPGVVSISDAAFSDFDTI-DDLVRKFISISALD 596
            R D D L D C  DT   T      +NGL C  P    A  F ++ L  A +     Y     LT  AA  PG N  GL++AR DL   GM  PH+HPRASE   V  G V+ GF DT+ +++  +L+AGE  VFPR ++HF +N+     A V S LNSQ+PG   +  +AF     + D++++K   I+  D
Sbjct:   21 RCDPDLLFDYCVADTAAATAAGAFHLNGLACIDPALARADHFATSALSRATNPAATLYGFNATLTSPAASLPGANAQGLAMARIDLAPGGMAPPHSHPRASEAALVLSGSVLVGFADTSYRLYTQLLRAGEAFVFPRAMVHFLYNMDTAAPAVVLSGLNSQSPGAQLVPFSAFRTEPRLPDEVLKKAFKITGQD 214          
BLAST of FC868724 vs. ExPASy Swiss-Prot
Match: OXO1_HORVU (Oxalate oxidase 1 OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.120e-25
Identity = 68/164 (41.46%), Postives = 93/164 (56.71%), Query Frame = 3
Query:   39 ADFDNLQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLLTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKG---VVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSI 521
            +D D LQD C  D   K  + +NG  CK           S+KL  AG+T     S++T L  A++PG NTLG+S+ R D    G   PH HPRA+E+  V KG   V I G +D+  +++  +++AGE  V PRGL+HF FNVG   A +    NSQNPG+V +
Sbjct:    1 SDPDPLQDFCVADLDGK-AVSVNGHTCKPMSEAGDDFLFSSKLTKAGNTSTPNGSAVTELDVAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFV 163          
BLAST of FC868724 vs. ExPASy Swiss-Prot
Match: GL33_ARATH (Germin-like protein subfamily 3 member 3 OS=Arabidopsis thaliana GN=GER3 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.120e-25
Identity = 68/191 (35.60%), Postives = 105/191 (54.97%), Query Frame = 3
Query:   45 FDNLQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLLTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSDFDTIDDLVRKFISISALDE*SIRNV 617
            F ++QD C  D    Q+   +G  CK+PD++  +DF  T L  AG+T     +++T   A  + G+N LG+S+AR DL   G++  HTHP ASE+L V +G + AGF+ +  +V+   L  G+  VFP+GLLHF  N G   A  F    S +PG+  +  A F++ D   +LV     +S  +   ++ V
Sbjct:   19 FASVQDFCVADPKGPQSP--SGYSCKNPDQVTENDFAFTGLGTAGNTSNIIKAAVTPAFAPAYAGINGLGVSLARLDLAGGGVIPLHTHPGASEVLVVIQGTICAGFISSANKVYLKTLNRGDSMVFPQGLLHFQLNSGKGPALAFVAFGSSSPGLQILPFALFAN-DLPSELVEATTFLSDAEVKKLKGV 206          
BLAST of FC868724 vs. ExPASy Swiss-Prot
Match: GER2_WHEAT (Oxalate oxidase GF-2.8 OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.075e-25
Identity = 67/163 (41.10%), Postives = 93/163 (57.06%), Query Frame = 3
Query:   42 DFDNLQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLLTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKG---VVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSI 521
            D D LQD C  D   K  + +NG  CK           S+KL  AG+T     S++T L  A++PG NTLG+S+ R D    G   PH HPRA+E+  V KG   V I G +D+  +++  +++AGE  + PRGL+HF FNVG   A++    NSQNPG+V +
Sbjct:   25 DPDPLQDFCVADLDGK-AVSVNGHTCKPMSEAGDDFLFSSKLAKAGNTSTPNGSAVTELDVAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGIVMKGELLVGILGSLDSGNKLYSRVVRAGETFLIPRGLMHFQFNVGKTEASMVVSFNSQNPGIVFV 186          
BLAST of FC868724 vs. ExPASy Swiss-Prot
Match: AB19B_PRUPE (Auxin-binding protein ABP19b OS=Prunus persica GN=ABP19B PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.075e-25
Identity = 78/212 (36.79%), Postives = 110/212 (51.89%), Query Frame = 3
Query:    9 ICFTCIGFRRADFDNLQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLLTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSDFDTIDDLVRKFISISALDE*SIRNVTLPKIYKLK 644
            I FT          ++QD C  D   K      G  CK P  +  +DF  + L  AG+T     +++T   AA FPG+N LG+S+AR DL   G+V  HTHP ASE+L V +G +IAGFV ++   +   LK G++ VFP+GLLHF  N G   A  F   +S +PG+  +  A F      +DL  + I+ + L       +  P+I KLK
Sbjct:    5 IFFTFFLLLSTSHASVQDFCVADY--KAPDGPAGYSCKKPAIVTVNDFVYSGLGIAGNTTNIFKAAVTPAFAAQFPGVNGLGISLARLDLGPGGVVPFHTHPGASEVLLVVQGTIIAGFVASDNTPYLKTLKKGDIIVFPQGLLHFQVNGGDTPAIAFPSFSSPSPGLQIVDFALFK-----NDLATELIAQTTL-------LDAPQIKKLK 202          
The following BLAST results are available for this feature:
BLAST of FC868724 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GLT2_ARATH4.814e-2639.57Germin-like protein subfamily T member 2 OS=Arabid... [more]
GL34_ORYSJ4.814e-2640.12Putative germin-like protein 3-4 OS=Oryza sativa s... [more]
GL24_ARATH6.287e-2640.91Germin-like protein subfamily 2 member 4 OS=Arabid... [more]
GL33_ORYSJ1.072e-2540.12Germin-like protein 3-3 OS=Oryza sativa subsp. jap... [more]
GL812_ORYSJ1.401e-2538.12Germin-like protein 8-12 OS=Oryza sativa subsp. ja... [more]
GL31_ORYSJ1.829e-2538.66Germin-like protein 3-1 OS=Oryza sativa subsp. jap... [more]
OXO1_HORVU3.120e-2541.46Oxalate oxidase 1 OS=Hordeum vulgare PE=1 SV=1[more]
GL33_ARATH3.120e-2535.60Germin-like protein subfamily 3 member 3 OS=Arabid... [more]
GER2_WHEAT4.075e-2541.10Oxalate oxidase GF-2.8 OS=Triticum aestivum PE=1 S... [more]
AB19B_PRUPE4.075e-2536.79Auxin-binding protein ABP19b OS=Prunus persica GN=... [more]

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Properties
Property NameValue
Genbank descriptionC31004A06EF AbioticL1 Citrus clementina cDNA clone C31004A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868724 ID=FC868724; Name=FC868724; organism=Citrus clementina; type=EST; length=661bp
TGTACATAATCTGCTTCACTTGCATTGGCTTCCGCCGGGCAGATTTTGAT
AATCTTCAGGATATCTGCCCAACTGATACAACTAAGAAACAAACCATTTT
CATTAATGGTTTGCCATGCAAGAGTCCAGACCGCATATTTGCTTCGGATT
TCAAGTCCACGAAACTAAGAGATGCCGGCGACACAGATAAATTTCCCTAT
TCCTCATTGACCCTCCTCACTGCTGCAGATTTCCCAGGCCTTAACACTCT
TGGCCTTTCCGTTGCTAGAACTGACCTTGATGTGGATGGCATGGTGGTGC
CTCATACTCACCCTAGAGCCTCAGAGATGCTCTTCGTTTTCAAAGGTGTT
GTGATTGCTGGTTTTGTTGACACCAACAGACAGGTTTTCCAGGTAATGCT
TAAAGCAGGAGAAGTGTGTGTGTTTCCCAGGGGTCTGCTACACTTCGGCT
TTAACGTTGGTTATGAGTTCGCAACTGTTTTTTCAGTGCTAAACAGCCAG
AATCCTGGGGTGGTCAGCATCAGTGATGCCGCGTTCTCCGATTTCGATAC
CATTGACGACCTTGTGAGAAAATTCATTTCAATTTCTGCGTTGGACGAAT
AGAGTATCAGAAATGTCACACTTCCNAAGATTTACAAGCTTAAAATCACG
AAACACCACAT
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