FC868724

Overview
NameFC868724
Unique NameFC868724
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length661
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC868724_ssr414 microsatellite FC868724_ssr414:414..423. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC868724 vs. ExPASy Swiss-Prot
Match: GL14_ORYSJ (Germin-like protein 1-4 OS=Oryza sativa subsp. japonica GN=Os01g0952100 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.229e-22
Identity = 72/175 (41.14%), Postives = 96/175 (54.86%), Query Frame = 3
Query:   42 DFDNLQDICPTDTTKKQ-TIFINGLPCKSPDRIFASDFKSTKLRDAGD--TDKFPYSSLTLLTAADFPGLNTLGLSVARTDLDV-DGMVVPHTHPRASEMLFVFKGVVIAGFV------DTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAF 536
            D D LQDIC  D    Q  + +NG PCK    + A DF    L    D  +     S++T  T    PGLNTLG+S+AR D     G   PH+HPRA+E+LFV  G++  GFV       ++R + +V+ K G V VFPRGLLH+  +VG + A   S  +SQ PG  + +DA F
Sbjct:   29 DPDMLQDICVADYKSLQGPLRVNGFPCKPEANVTAEDFFFPGLGKPADVYSGNPMGSAVTAATVERIPGLNTLGVSMARVDYAPWGGANPPHSHPRATEILFVADGLLEVGFVVATAAPASSRLITRVVPKGG-VFVFPRGLLHYERSVGEKPAVAISAFDSQLPGTQAAADALF 202          
BLAST of FC868724 vs. ExPASy Swiss-Prot
Match: GL813_ORYSJ (Germin-like protein 8-13 OS=Oryza sativa subsp. japonica GN=Os08g0459700 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.699e-19
Identity = 51/147 (34.69%), Postives = 82/147 (55.78%), Query Frame = 3
Query:  105 NGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLLTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFV-DTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSD 542
            +G  C+    + A+DF S  L   G   +   +SL       +P +N LG+S +R D+   G+V  HTHP  SE+L+V  G ++AGF+  ++ +V+   +  G + VFP+GLLHF +N G   A  F+  +S NPG+  +  A F++
Sbjct:   44 SGYQCRPAATVTAADFYSGALARPGILIRPFNTSLASAFVQQYPAVNGLGISASRVDILPGGVVPLHTHPAGSELLYVLDGALVAGFISSSDNKVYYKEVSKGGMFVFPQGLLHFQYNTGDTTAVAFAAYSSSNPGLQILDYALFAN 190          
BLAST of FC868724 vs. ExPASy Swiss-Prot
Match: GLP1_IPONI (Germin-like protein OS=Ipomoea nil GN=GLP PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.230e-18
Identity = 49/136 (36.03%), Postives = 79/136 (58.09%), Query Frame = 3
Query:  105 NGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLLTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGV 512
            +G  CK+  ++ A+DF  + L   G+T     +++T      FPG+  LG+++AR DL   G++  HTHP ASE+L V +G ++A F+ +  +V++  L  G+V VFP+GLL F    G + A     L  +NPG+
Sbjct:   40 SGFVCKNTAKVTAADFVYSGLAKPGNTTNIINAAVTPAFVGQFPGVIGLGVTLARLDLAPGGVIPMHTHPGASEILNVVEGTILAAFISSGNKVYEKALYPGDVMVFPQGLLDFQEITG-KIAPGLCELRQRNPGL 174          
BLAST of FC868724 vs. ExPASy Swiss-Prot
Match: GL92_ORYSJ (Putative germin-like protein 9-2 OS=Oryza sativa subsp. japonica GN=Os09g0568600 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.395e-17
Identity = 54/151 (35.76%), Postives = 76/151 (50.33%), Query Frame = 3
Query:  123 SPDRIFASDFKSTKLRDAGDTDKFPYSS---LTLLTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSDFDTIDDLV 566
            +P  I    F  T  R   +T   P  +   +T  T A+FP LN   +S A        +  PHTHPR++E+L V  G +  GF+DT  +++   L AG++ VFP+G++HF FN G + A   S   S  PGVV +    F     IDD V
Sbjct:   41 NPMNITGDFFTFTGFRKVFNTSSAPEPNSFTVTKATMAEFPALNGQSVSYATLVFPPSTVNPPHTHPRSAELLLVVDGALSVGFIDTTNKLYTQDLAAGDMFVFPKGMVHFQFNSGNQPAMALSAFGSAAPGVVPVPVTVFG--TGIDDAV 189          
BLAST of FC868724 vs. ExPASy Swiss-Prot
Match: GL93_ORYSJ (Germin-like protein 9-3 OS=Oryza sativa subsp. japonica GN=Os09g0568700 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.314e-15
Identity = 46/121 (38.02%), Postives = 67/121 (55.37%), Query Frame = 3
Query:  204 SLTLLTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSDFDTIDDLV 566
            ++T  T A+FP LN   +S A        +  PHTHPR++E+L +  G +  GFVDT  +++   L AG++ VFP+G++HF FN G + A   S   S   G+VS+    F     IDD V
Sbjct:   71 TVTKATMAEFPALNGQSVSYAVLMYPPATLNPPHTHPRSAELLLLVDGALSVGFVDTTNKLYTQDLAAGDMFVFPKGMVHFQFNSGNQPAMALSAFGSAAAGLVSVPVTVFG--TNIDDAV 189          
BLAST of FC868724 vs. ExPASy Swiss-Prot
Match: GL91_ORYSJ (Germin-like protein 9-1 OS=Oryza sativa subsp. japonica GN=Os09g0568500 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.112e-14
Identity = 51/142 (35.92%), Postives = 75/142 (52.82%), Query Frame = 3
Query:  150 FKSTKLRDAGDTDKFPYSSLTLLTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDT--NRQVFQVMLKAGEVCVFPRGLLHFGFNVGYE-FATVFSVLNSQNPGVVSISDAAFSDFDTIDDLV 566
            +K+    ++GD  K    ++T  T A+FP L    +S A        +  PH HPRASE+L V +G ++ G VD   N  V+   L+ G++ VFP+G++HF FN G +  A  FS   S  PG +S+  A F     IDD +
Sbjct:   52 YKNLVTGNSGDPAKL---TVTKATHAEFPALLGQSVSYAALVFGAGTVNPPHIHPRASELLVVVQGPLLVGLVDAARNGTVYTQTLQTGDMFVFPKGMVHFQFNNGTDVVARAFSAFGSATPGTISLPAALFG--SGIDDTI 188          
BLAST of FC868724 vs. ExPASy Swiss-Prot
Match: GLT3_ARATH (Germin-like protein subfamily T member 3 OS=Arabidopsis thaliana GN=At1g74820 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.210e-14
Identity = 48/155 (30.97%), Postives = 75/155 (48.39%), Query Frame = 3
Query:   57 QDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLLTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSI 521
            QD C  D     T   +G PCKS  ++ + DF  + L    +T      +        FPGLNTLG+S+    +   G   PH+HP  +E   V +G V+ GF+ TN  ++  ++  G++ V P GL+H+  NVG     + +V+    P  V +
Sbjct:   41 QDFCVADLQATPTN--SGYPCKS--QVTSEDFFYSGLNTPLNTSNPKGIAANPANLLTFPGLNTLGISMYNVAIAPGGYNQPHSHPGVTEAGVVIEGSVLVGFLTTNYTLYSKVIGPGDMFVIPPGLIHYEGNVGKTQCRLLTVVADDLPSEVGV 191          
BLAST of FC868724 vs. ExPASy Swiss-Prot
Match: SR1B_PHYPO (Spherulin-1B OS=Physarum polycephalum PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.167e-12
Identity = 49/161 (30.43%), Postives = 81/161 (50.31%), Query Frame = 3
Query:  129 DRIFASDFKSTKLRDAGDTDKFPYSSLTLLTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVF-QVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAF-------------SDFDTIDDLVR 569
            D  F  DFK++KL   G T      ++   +  DFP +    +++    ++  G+ +PHTHPRA+E+ F+ KG   AGF   N+  F   +L+ G   VFP+G +HF  N+  E A   +  N+++PGV + + + F             S   T++DL +
Sbjct:   56 DNQFVFDFKNSKL---GVTQSAGGKTVAT-SRTDFPAVIGHNIAMTVGFIEACGINLPHTHPRATEINFIAKGRFQAGFFLENQATFIGHILEEGMATVFPQGAIHFEINLECEPAMFVAAFNNEDPGVQTTASSFFGLPADVAAVSLNISSIQTVEDLAK 212          
BLAST of FC868724 vs. ExPASy Swiss-Prot
Match: SR1A_PHYPO (Spherulin-1A OS=Physarum polycephalum PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.151e-11
Identity = 53/158 (33.54%), Postives = 81/158 (51.27%), Query Frame = 3
Query:  129 DRIFASDFKSTKLRDAGDTDKFPYSSLTLLTAADFPGLNTLGLSVARTD--LDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVF-QVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSDFDTIDDLVRKFISISAL 593
            D  F  DFK++KL     T           +  +FP +  +G +VA T   ++  G+ +PHTHPRA+E+ F+  G   AGF   N+  F    L+AG   VFP+G +HF  N+  E A   +  N+++PGV      A S F    D+V   ++IS++
Sbjct:   69 DNQFVFDFKNSKLGVTQGTG----GKTVATSRTNFPAV--IGHNVAMTVGFIEACGINLPHTHPRATEINFIASGKFEAGFFLENQAKFIGHTLEAGMATVFPQGAIHFEINMNCEPAMFVAAFNNEDPGV---QTTASSFFGLPADVVGVSLNISSI 217          
The following BLAST results are available for this feature:
BLAST of FC868724 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GL14_ORYSJ3.229e-2241.14Germin-like protein 1-4 OS=Oryza sativa subsp. jap... [more]
GL813_ORYSJ5.699e-1934.69Germin-like protein 8-13 OS=Oryza sativa subsp. ja... [more]
GLP1_IPONI8.230e-1836.03Germin-like protein OS=Ipomoea nil GN=GLP PE=2 SV=... [more]
GL92_ORYSJ2.395e-1735.76Putative germin-like protein 9-2 OS=Oryza sativa s... [more]
GL93_ORYSJ1.314e-1538.02Germin-like protein 9-3 OS=Oryza sativa subsp. jap... [more]
GL91_ORYSJ1.112e-1435.92Germin-like protein 9-1 OS=Oryza sativa subsp. jap... [more]
GLT3_ARATH7.210e-1430.97Germin-like protein subfamily T member 3 OS=Arabid... [more]
SR1B_PHYPO5.167e-1230.43Spherulin-1B OS=Physarum polycephalum PE=2 SV=1[more]
SR1A_PHYPO1.151e-1133.54Spherulin-1A OS=Physarum polycephalum PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC31004A06EF AbioticL1 Citrus clementina cDNA clone C31004A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868724 ID=FC868724; Name=FC868724; organism=Citrus clementina; type=EST; length=661bp
TGTACATAATCTGCTTCACTTGCATTGGCTTCCGCCGGGCAGATTTTGAT
AATCTTCAGGATATCTGCCCAACTGATACAACTAAGAAACAAACCATTTT
CATTAATGGTTTGCCATGCAAGAGTCCAGACCGCATATTTGCTTCGGATT
TCAAGTCCACGAAACTAAGAGATGCCGGCGACACAGATAAATTTCCCTAT
TCCTCATTGACCCTCCTCACTGCTGCAGATTTCCCAGGCCTTAACACTCT
TGGCCTTTCCGTTGCTAGAACTGACCTTGATGTGGATGGCATGGTGGTGC
CTCATACTCACCCTAGAGCCTCAGAGATGCTCTTCGTTTTCAAAGGTGTT
GTGATTGCTGGTTTTGTTGACACCAACAGACAGGTTTTCCAGGTAATGCT
TAAAGCAGGAGAAGTGTGTGTGTTTCCCAGGGGTCTGCTACACTTCGGCT
TTAACGTTGGTTATGAGTTCGCAACTGTTTTTTCAGTGCTAAACAGCCAG
AATCCTGGGGTGGTCAGCATCAGTGATGCCGCGTTCTCCGATTTCGATAC
CATTGACGACCTTGTGAGAAAATTCATTTCAATTTCTGCGTTGGACGAAT
AGAGTATCAGAAATGTCACACTTCCNAAGATTTACAAGCTTAAAATCACG
AAACACCACAT
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