FC868726

Overview
NameFC868726
Unique NameFC868726
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15462 contig Ccv1_Contig15462:54..789. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_CYAA5 (Tryptophan synthase alpha chain OS=Cyanothece sp. (strain ATCC 51142) GN=trpA PE=3 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 5.142e-54
Identity = 101/190 (53.16%), Postives = 139/190 (73.16%), Query Frame = 2
Query:  161 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTGARASISGHVQ 730
            ++E F  L+ + +  LIP+ITAGDPDL TTA+AL++LD+ G+D+IELGVPYSDPLADGPVIQAAA+R+L RG     +L+++K V   I  PI LF+YYNPI  RG++ F+  ++  G++GLVVPD+PLEE E+L K A +  IE+ L   PT+P +R+KAI   S+GF+YL S  GVTG R  ++  V+
Sbjct:    4 VSECFQSLRDRKQCGLIPFITAGDPDLETTAKALRVLDASGADLIELGVPYSDPLADGPVIQAAASRALRRGVKLEDVLNIVKGVQGDIKAPIILFSYYNPIFYRGIEAFLEQIKSAGVKGLVVPDLPLEEAETLLKPAAEMGIEVTLLVAPTSPIERIKAIAHQSQGFIYLVSVTGVTGMRTQVATRVE 193          
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_SYNP6 (Tryptophan synthase alpha chain OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=trpA PE=3 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 6.285e-52
Identity = 101/189 (53.44%), Postives = 133/189 (70.37%), Query Frame = 2
Query:  161 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTGARASISGHV 727
            +++ F  L+ QG+ ALIP++TAGDPDL TT +AL  LD  G+D+IELGVPYSDPLADGPVIQAAATR+L  GT  + +L++LK+V  QI  PI LFTY NPIL RG + F+  +   G  GLVVPD+PLEE++ L + A +  I+L+L   PT+  DR+ AI + + GF+YL S  GVTG R  +   V
Sbjct:    4 ISDCFAALRSQGRCALIPFLTAGDPDLETTRQALLALDREGADLIELGVPYSDPLADGPVIQAAATRALQAGTRLDDVLALLKDVRSQIKAPIVLFTYCNPILNRGFEAFLDQIAAAGANGLVVPDLPLEESQRLSEVAAERGIDLILLIAPTSSADRIAAISKQARGFIYLVSVTGVTGMRQGMQSRV 192          
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_SYNE7 (Tryptophan synthase alpha chain OS=Synechococcus elongatus (strain PCC 7942) GN=trpA PE=3 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 6.285e-52
Identity = 101/189 (53.44%), Postives = 133/189 (70.37%), Query Frame = 2
Query:  161 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTGARASISGHV 727
            +++ F  L+ QG+ ALIP++TAGDPDL TT +AL  LD  G+D+IELGVPYSDPLADGPVIQAAATR+L  GT  + +L++LK+V  QI  PI LFTY NPIL RG + F+  +   G  GLVVPD+PLEE++ L + A +  I+L+L   PT+  DR+ AI + + GF+YL S  GVTG R  +   V
Sbjct:    4 ISDCFAALRSQGRCALIPFLTAGDPDLETTRQALLALDREGADLIELGVPYSDPLADGPVIQAAATRALQAGTRLDDVLALLKDVRSQIKAPIVLFTYCNPILNRGFEAFLDQIAAAGANGLVVPDLPLEESQRLSEVAAERGIDLILLIAPTSSADRIAAISKQARGFIYLVSVTGVTGMRQGMQSRV 192          
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_PROMA (Tryptophan synthase alpha chain OS=Prochlorococcus marinus GN=trpA PE=3 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 6.949e-51
Identity = 98/191 (51.31%), Postives = 134/191 (70.16%), Query Frame = 2
Query:  161 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTGARASISGHVQL 733
            L   F++ KK+G++AL+P+I AGDPD++T+AE L +L+  G+DIIELG+PYSDPLADGP+IQ AA+R+L  GT+  ++L ML  +  ++S PI LFTY NP+L  G++ F       G  GLVVPD+PLEETE L   A+   ++LVL   PTTP +RM+ I + S GF YL S  GVTG R+++   VQL
Sbjct:    6 LERCFSQSKKEGRIALMPFIMAGDPDVNTSAEILIMLEKKGADIIELGIPYSDPLADGPIIQKAASRALNSGTSPKSVLEMLSTLKTKLSVPIILFTYSNPLLNYGMEEFCIDASKAGAAGLVVPDLPLEETEKLSSIALSKNLDLVLLVAPTTPKERMRKISQRSNGFTYLVSVTGVTGERSALENRVQL 196          
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_SYNS9 (Tryptophan synthase alpha chain OS=Synechococcus sp. (strain CC9902) GN=trpA PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.548e-50
Identity = 98/198 (49.49%), Postives = 136/198 (68.69%), Query Frame = 2
Query:  137 LTASPTVGLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTGARASISGHVQ 730
            +++  +  +A  F +LK++G++AL+P++ AGDPDLS TAE L  L + G+D++ELG+PYSDPLADGPVIQAAA R+LA GT    +L ML  +  Q+S P+ LFTY NP+L  G++ F     + G  GLVVPD+PLEE E L   A +  ++LVL   PTTPT+RM  I ++S GF YL S  GVTG R+++   V+
Sbjct:    1 MSSQQSSSIALRFEQLKREGRMALMPFLMAGDPDLSVTAEVLLSLQAAGADMVELGMPYSDPLADGPVIQAAAARALAAGTTPKKVLEMLSSLRGQLSIPVILFTYSNPLLNVGMERFCEQAAEAGASGLVVPDLPLEEAERLSPIAEREGLDLVLLVAPTTPTERMGRIAQSSRGFTYLVSVTGVTGERSTMETRVE 198          
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_PROMT (Tryptophan synthase alpha chain OS=Prochlorococcus marinus (strain NATL2A) GN=trpA PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.548e-50
Identity = 95/192 (49.48%), Postives = 136/192 (70.83%), Query Frame = 2
Query:  152 TVGLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTGARASISGHV 727
            +  ++ +F+++KK+ ++AL+P++ AGDPDL TTA+ L  L + G+D+IELG+PYSDPLADGP+IQ AA+R+L+ GT+ + +  ML E+  Q++ PI LFTY NP++ +G++ F      +G+ GLVVPD+PLEE E L   A   +I+LVL   PTTP DRMK I   S GF YL S  GVTG R+S+  +V
Sbjct:    3 STNISRSFSKIKKEKRIALMPFLMAGDPDLETTAKILLELQANGADMIELGIPYSDPLADGPIIQLAASRALSAGTSPDRVFKMLFELRDQLTIPIILFTYSNPLINKGLEEFCLQASKVGVSGLVVPDLPLEEAEKLSDIAESKEIDLVLLVAPTTPKDRMKRIAATSNGFTYLVSVTGVTGERSSLEDNV 194          
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_PROM1 (Tryptophan synthase alpha chain OS=Prochlorococcus marinus (strain NATL1A) GN=trpA PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.641e-50
Identity = 95/192 (49.48%), Postives = 135/192 (70.31%), Query Frame = 2
Query:  152 TVGLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTGARASISGHV 727
            +  ++ +F+++KK+ ++AL+P++ AGDPDL TTA+ L  L + G+D+IELG+PYSDPLADGP+IQ AA+R+L+ GT+ + +  ML E+  Q+  PI LFTY NP++ +G++ F      +G+ GLVVPD+PLEE E L   A   +I+LVL   PTTP DRMK I   S GF YL S  GVTG R+S+  +V
Sbjct:    3 STNISRSFSKIKKEKRIALMPFLMAGDPDLETTAKILLELQANGADMIELGIPYSDPLADGPIIQLAASRALSAGTSPDRVFKMLFELRDQLKIPIILFTYSNPLINKGLEEFCWQASKVGVSGLVVPDLPLEEAEKLSDIAESKEIDLVLLVAPTTPKDRMKKIAATSNGFTYLVSVTGVTGERSSLEDNV 194          
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_PROMM (Tryptophan synthase alpha chain OS=Prochlorococcus marinus (strain MIT 9313) GN=trpA PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 4.504e-50
Identity = 97/190 (51.05%), Postives = 131/190 (68.95%), Query Frame = 2
Query:  161 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTGARASISGHVQ 730
            ++  F R++ +G++AL+P++ AGDPDL TTAE L  L+  G+D+IELG+PYSDPLADGPVIQAAA+R+LA GT    +L ML ++  ++S P+ LFTY NP+  RG++ F     + G+ GLVVPD+PLEE E L   A    ++LVL   PTTP +RM  I E+S GF YL S  GVTG R+ +   VQ
Sbjct:   15 ISSRFQRVQAEGRLALMPFLMAGDPDLETTAEVLLSLEQSGADMIELGIPYSDPLADGPVIQAAASRALASGTTPARVLQMLIDLRGKLSIPVILFTYTNPLFNRGMERFCDEAAEAGVAGLVVPDLPLEEAERLSPLASARGLDLVLLVAPTTPAERMARIAESSRGFTYLVSVTGVTGERSVMEDRVQ 204          
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_GLOVI (Tryptophan synthase alpha chain OS=Gloeobacter violaceus GN=trpA PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.109e-48
Identity = 93/190 (48.95%), Postives = 133/190 (70.00%), Query Frame = 2
Query:  161 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTGARASISGHVQ 730
            +A  F  L  + +VA IP+ITAGDPDL TTAEAL  LD  G+D++ELG+PYSDPLADGP IQAAATR+LARGT   A+L ++  + P++  P+ +FTY+N IL  G++ F+  +   G  GL+VPD+P+EE ++LQ  A    ++++    PT+P +R++ I E + GFVYL S+ GVTGAR  ++  V+
Sbjct:   10 IARVFAALHARREVAFIPFITAGDPDLETTAEALLTLDRNGADLLELGLPYSDPLADGPTIQAAATRALARGTTPGAVLDLVARLTPELRAPLIVFTYFNLILAVGIEAFVERLAASGASGLLVPDLPVEEGDALQTAANVQGLDVIWLVAPTSPPERLRRIAERTTGFVYLVSTTGVTGARTQVASSVR 199          
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_PORYE (Tryptophan synthase alpha chain OS=Porphyra yezoensis GN=trpA PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.893e-48
Identity = 94/190 (49.47%), Postives = 135/190 (71.05%), Query Frame = 2
Query:  161 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTGARASISGHVQ 730
            ++  F  L KQ   ALIP+ITAGDPDL +T +AL++LDS G+DIIELG+PYSDPLADGP+IQ A+ R+L +G N N ILSM+K V   I  PI LFTYYNP+L  G++NF+  + + GIRGL++PD+P+EE+E +        IEL+L   PT+  +R+  I++ + G +YL S+ GVTG ++ ++  ++
Sbjct:    4 ISSVFENLDKQ--CALIPFITAGDPDLVSTGKALQILDSYGADIIELGLPYSDPLADGPIIQEASNRALKQGINLNKILSMVKTVNMTIKAPIVLFTYYNPVLHLGINNFIYAISNAGIRGLLIPDLPIEESEYVISVCNLFNIELILLLAPTSSRERISKIIKRAPGCIYLVSTTGVTGQKSQLTSQLK 191          
The following BLAST results are available for this feature:
BLAST of FC868726 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TRPA_CYAA55.142e-5453.16Tryptophan synthase alpha chain OS=Cyanothece sp. ... [more]
TRPA_SYNP66.285e-5253.44Tryptophan synthase alpha chain OS=Synechococcus s... [more]
TRPA_SYNE76.285e-5253.44Tryptophan synthase alpha chain OS=Synechococcus e... [more]
TRPA_PROMA6.949e-5151.31Tryptophan synthase alpha chain OS=Prochlorococcus... [more]
TRPA_SYNS91.548e-5049.49Tryptophan synthase alpha chain OS=Synechococcus s... [more]
TRPA_PROMT1.548e-5049.48Tryptophan synthase alpha chain OS=Prochlorococcus... [more]
TRPA_PROM12.641e-5049.48Tryptophan synthase alpha chain OS=Prochlorococcus... [more]
TRPA_PROMM4.504e-5051.05Tryptophan synthase alpha chain OS=Prochlorococcus... [more]
TRPA_GLOVI1.109e-4848.95Tryptophan synthase alpha chain OS=Gloeobacter vio... [more]
TRPA_PORYE1.893e-4849.47Tryptophan synthase alpha chain OS=Porphyra yezoen... [more]

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Properties
Property NameValue
Genbank descriptionC31004A09EF AbioticL1 Citrus clementina cDNA clone C31004A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868726 ID=FC868726; Name=FC868726; organism=Citrus clementina; type=EST; length=736bp
AACACTGTCTGAAATGGCTCCGCTGCAAGCAACAACTAACTTCGTCCATC
TCAAGAACCCACATGCTCATTATCTCCCTCGGCTCCCCTGTCACAAATCT
ACTCTTTCACTAAAAAGATTCACTCCCATGGCTGCTCTCACTGCATCTCC
CACTGTTGGTCTCGCTGAAACATTCACCCGATTGAAGAAGCAAGGCAAAG
TGGCCCTTATTCCATACATCACTGCTGGTGATCCTGACCTTTCAACCACC
GCAGAAGCGTTGAAGTTGCTTGACTCTTGTGGATCAGACATAATTGAACT
GGGTGTTCCATATTCTGATCCTTTAGCAGATGGTCCAGTCATCCAGGCTG
CGGCTACACGATCTTTAGCAAGAGGAACCAACTTCAATGCAATTCTTTCT
ATGTTGAAGGAGGTGGTTCCTCAAATATCTTGTCCAATTGCTTTATTTAC
ATATTACAACCCAATTCTGAAGCGAGGAGTTGATAATTTCATGTCCACAG
TAAGAGACATTGGCATACGTGGGCTTGTGGTTCCAGATGTCCCTCTGGAG
GAGACTGAATCTTTACAGAAGGAAGCCATGAAAAATAAGATTGAGCTGGT
ACTTTTTACAACTCCCACCACTCCAACAGATCGAATGAAAGCCATTGTTG
AAGCATCAGAGGGATTTGTCTATCTTTGTAGCTCAATTGGAGTTACTGGA
GCTCGCGCTTCTATTAGTGGCCATGTTCAACTCTTT
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