FC868726

Overview
NameFC868726
Unique NameFC868726
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15462 contig Ccv1_Contig15462:54..789. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_PSEMY (Tryptophan synthase alpha chain OS=Pseudomonas mendocina (strain ymp) GN=trpA PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 5.166e-38
Identity = 80/191 (41.88%), Postives = 114/191 (59.69%), Query Frame = 2
Query:  161 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTGARASISGHVQ 730
            L   F  LK + + AL+ ++TAGDPD +T+   LK L   G+D+IELG+P++DP+ADGP IQ A  R+LA        L M++E      S P+ L  YYNPI   GV+ F+S  ++ G+ GL+V D+P E  + L + A    ++ +  TTPTT  DR+  ++  S GFVY  S  GVTGA A+   HV+
Sbjct:    4 LQNRFAELKAENRAALVTFVTAGDPDYATSLSILKGLPEAGADVIELGMPFTDPMADGPAIQLANIRALAGKQGMQQTLQMVREFRAGNQSTPLVLMGYYNPIFVYGVERFISDAKEAGVDGLIVVDLPPEHNDELCEPAQSAGLDFIRLTTPTTDDDRLPTVLAGSSGFVYYVSVAGVTGAGAATLDHVE 194          
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_CARHZ (Tryptophan synthase alpha chain OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=trpA PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.747e-38
Identity = 76/189 (40.21%), Postives = 118/189 (62.43%), Query Frame = 2
Query:  161 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTGARASISGHV 727
            + + F   + +G+ ALI Y   GDP+L+ + E +K L + G+D+IE+G+P+SDPLADGPVIQ A  R+LA G+    +L+++     ++S P+ + +Y NPIL+ GVD F+      G  GL++PD+P+EE E ++  A    ++L+    PTT   R++ IV  + GF+Y  S  GVTGAR S+   V
Sbjct:    4 IGQVFAEKRSRGEKALIAYTMGGDPNLTFSLEIIKTLAAAGADLIEVGLPFSDPLADGPVIQRAGQRALAAGSGPEEVLALIAAARQELSLPLVIMSYLNPILQIGVDEFLRRAAGAGADGLIIPDLPVEEGEEIRVSAAGYGLDLIPLVAPTTGQKRLEKIVGQASGFIYCVSVTGVTGARDSLPAEV 192          
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_PETMO (Tryptophan synthase alpha chain OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=trpA PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 8.811e-38
Identity = 73/176 (41.48%), Postives = 110/176 (62.50%), Query Frame = 2
Query:  203 ALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTGARASISGHVQ 730
            ALI Y+TAGDP+L  T E +  L+  G DIIE+G+P+SDPLADGP+IQ A+ ++L  G     I   L E+  +++CP+ L  YYN IL  G+DNF++   + GI G+++PD+P +E E    +  +N I+ +L   P T  +R+K I +   GF+Y  S +GVTG   +   H++
Sbjct:   13 ALITYVTAGDPNLEVTKEIILELNKDGVDIIEVGIPFSDPLADGPIIQKASQKALKNGVTLKKIFETLNEIKEEVTCPLVLMGYYNSILNYGIDNFITEAVNTGISGVIIPDLPFDEEEEFYAKIKENGIDPILLVAPNTSEERLKEISKVCSGFLYCVSIMGVTGDSQAPMEHLK 188          
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_PSEAE (Tryptophan synthase alpha chain OS=Pseudomonas aeruginosa GN=trpA PE=3 SV=3)

HSP 1 Score: 156.762 bits (395), Expect = 1.151e-37
Identity = 80/191 (41.88%), Postives = 118/191 (61.78%), Query Frame = 2
Query:  161 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQIS-CPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTGARASISGHVQ 730
            L   F +LK++ + AL+ ++TAGDPD +++ E LK L + G+D+IELG+P++DP+ADGP IQ A  R+L  G      L M++E     S  P+ L  Y+NPI   GV+ F++  +++G+ GL+V D+P E  E L   A    I+ +  TTPTT   R+  ++E S GFVY  S  GVTGA A+   HV+
Sbjct:    4 LQTRFAQLKQENRAALVTFVTAGDPDYASSLEILKGLPAAGADVIELGMPFTDPMADGPAIQLANIRALDGGQTLARTLQMVREFRSGDSETPLVLMGYFNPIHHYGVERFIAEAKEVGVDGLIVVDLPPEHNEDLCHPAQAAGIDFIRLTTPTTGDQRLPTVLEGSSGFVYYVSVAGVTGANAATLEHVE 194          
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_PSEA8 (Tryptophan synthase alpha chain OS=Pseudomonas aeruginosa (strain LESB58) GN=trpA PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.503e-37
Identity = 78/191 (40.84%), Postives = 118/191 (61.78%), Query Frame = 2
Query:  161 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVP-QISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTGARASISGHVQ 730
            L   F +LK++ + AL+ ++TAGDPD +++ E LK L + G+D+IELG+P++DP+ADGP IQ A  R+L  G      L M++E    +   P+ L  Y+NPI   GV+ F++  +++G+ GL+V D+P E  E L   A    ++ +  TTPTT   R+  ++E S GFVY  S  GVTGA A+   HV+
Sbjct:    4 LQTRFAQLKQENRAALVTFVTAGDPDYASSLEILKGLPAAGADVIELGMPFTDPMADGPAIQLANIRALDGGQTLARTLQMVREFRSGESETPLVLMGYFNPIHHYGVERFIAEAKEVGVDGLIVVDLPPEHNEDLCHPAQAAGLDFIRLTTPTTGDQRLPTVLEGSSGFVYYVSVAGVTGANAATLEHVE 194          
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_SYNFM (Tryptophan synthase alpha chain OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=trpA PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.963e-37
Identity = 75/178 (42.13%), Postives = 111/178 (62.36%), Query Frame = 2
Query:  167 ETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTG 700
            E F +L+K+ + AL+ ++TAGDPD   + E ++ +   G DI+ELG+P+SDP ADGPVIQ ++TR+L  G N +    M++E+      PI  F+YYNPIL  G   F     D G  G+++ D+P EE++ L ++     + L+    PTTP DRM AI +++ GF+YL S  GVTG
Sbjct:    6 EKFEQLRKRNEKALVGFVTAGDPDPGRSLEIIRTMCRSGVDILELGIPFSDPTADGPVIQRSSTRALKAGMNLSKAFEMIRELRGTCDVPIVAFSYYNPILAYGGAKFYRDALDSGADGVLIVDLPPEESDELTRQWPDRDLALIRLVAPTTPPDRMSAIAQSASGFIYLVSMTGVTG 183          
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_RHOPA (Tryptophan synthase alpha chain OS=Rhodopseudomonas palustris GN=trpA PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.963e-37
Identity = 76/188 (40.43%), Postives = 117/188 (62.23%), Query Frame = 2
Query:  152 TVGLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTGARAS 712
            T  +   F  LK+QG+ AL+ ++ AGDPDL T+ + LK+L + G+D+IE+G+P++DP+ADGP IQAA  R+L  GT     L ++++      + P+ L  YYNPI   GVD F++  +  G+ GL++ D+P EE E L   AMK  +  +   TPTT   R+ A++  + GFVY  S  G+TG+ ++
Sbjct:    2 TTRIDTRFGELKQQGRPALVTFVMAGDPDLDTSLQILKVLPAAGADVIEIGMPFTDPMADGPAIQAAGLRALKAGTTLKKTLGLVRDFRATDNATPLVLMGYYNPIYIYGVDAFLADAKAAGVDGLIIVDLPPEEDEELCLPAMKAGLNFIRLATPTTDEKRLPAVLANTSGFVYYVSITGITGSASA 189          
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_PSEAB (Tryptophan synthase alpha chain OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=trpA PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.963e-37
Identity = 79/191 (41.36%), Postives = 118/191 (61.78%), Query Frame = 2
Query:  161 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQIS-CPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTGARASISGHVQ 730
            L   F +LK++ + AL+ ++TAGDPD +++ E LK L + G+D+IELG+P++DP+ADGP IQ A  R+L  G      L M++E     S  P+ L  Y+NPI   GV+ F++  +++G+ GL+V D+P E  E L   A    ++ +  TTPTT   R+  ++E S GFVY  S  GVTGA A+   HV+
Sbjct:    4 LQTRFAQLKQENRAALVTFVTAGDPDYASSLEILKGLPAAGADVIELGMPFTDPMADGPAIQLANIRALDGGQTLARTLQMVREFRSGDSETPLVLMGYFNPIHHYGVERFIAEAKEVGVDGLIVVDLPPEHNEDLCHPAQAAGLDFIRLTTPTTGDQRLPTVLEGSSGFVYYVSVAGVTGANAATLEHVE 194          
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_OLICO (Tryptophan synthase alpha chain OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=trpA PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.963e-37
Identity = 77/188 (40.96%), Postives = 113/188 (60.11%), Query Frame = 2
Query:  152 TVGLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTGARAS 712
            T  L   F  LKK+G+ AL+ ++  GDPDL T+   +K L   G+D+IE+G+P++DP+ADGP IQAA  R+L  GT     L +++     + + P+ L  YYNPI   GVD F+   ++ G+ GL+V D+P EE E L   A+K  +  +   TPTT   R+ A++  + GFVY  S  G+TGA A+
Sbjct:    2 TTRLDTRFADLKKEGRAALVTFLMCGDPDLETSLAIMKALPKAGADVIEIGMPFTDPMADGPAIQAAGLRALKAGTTLKKTLDVVRNFRKGEAATPVVLMGYYNPIFIYGVDRFLVDAKEAGVDGLIVVDLPPEEDEELCLPALKAGVNFIRLATPTTDDKRLPAVLANTSGFVYYVSITGITGAAAA 189          
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_RHOS5 (Tryptophan synthase alpha chain OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=trpA PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.564e-37
Identity = 81/183 (44.26%), Postives = 111/183 (60.66%), Query Frame = 2
Query:  167 ETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTGARAS 712
            +TF RL+ +GK A + YI AGDPDL T+ E +K L   G DIIELG+P++DP+ADGP IQ A  R+L  G      L+M++E      S PI +  YYNPI  RGVD F++  ++ GI GL+V D+P EE   L   A    +  +   TPTT   R+  +++ + GFVY  S  G+TGA A+
Sbjct:    6 DTFRRLRAEGKKAFVAYIMAGDPDLETSLEVMKGLPGAGVDIIELGMPFTDPMADGPTIQTAGQRALEGGQTLARTLAMVREFRRGDASTPIVMMGYYNPIHARGVDRFLAEAQEAGIDGLIVVDLPPEEDAELCLPAQAAGLNFIRLATPTTDDRRLPKVLQNTSGFVYYVSITGITGAAAA 188          
The following BLAST results are available for this feature:
BLAST of FC868726 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TRPA_PSEMY5.166e-3841.88Tryptophan synthase alpha chain OS=Pseudomonas men... [more]
TRPA_CARHZ6.747e-3840.21Tryptophan synthase alpha chain OS=Carboxydothermu... [more]
TRPA_PETMO8.811e-3841.48Tryptophan synthase alpha chain OS=Petrotoga mobil... [more]
TRPA_PSEAE1.151e-3741.88Tryptophan synthase alpha chain OS=Pseudomonas aer... [more]
TRPA_PSEA81.503e-3740.84Tryptophan synthase alpha chain OS=Pseudomonas aer... [more]
TRPA_SYNFM1.963e-3742.13Tryptophan synthase alpha chain OS=Syntrophobacter... [more]
TRPA_RHOPA1.963e-3740.43Tryptophan synthase alpha chain OS=Rhodopseudomona... [more]
TRPA_PSEAB1.963e-3741.36Tryptophan synthase alpha chain OS=Pseudomonas aer... [more]
TRPA_OLICO1.963e-3740.96Tryptophan synthase alpha chain OS=Oligotropha car... [more]
TRPA_RHOS52.564e-3744.26Tryptophan synthase alpha chain OS=Rhodobacter sph... [more]

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Properties
Property NameValue
Genbank descriptionC31004A09EF AbioticL1 Citrus clementina cDNA clone C31004A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868726 ID=FC868726; Name=FC868726; organism=Citrus clementina; type=EST; length=736bp
AACACTGTCTGAAATGGCTCCGCTGCAAGCAACAACTAACTTCGTCCATC
TCAAGAACCCACATGCTCATTATCTCCCTCGGCTCCCCTGTCACAAATCT
ACTCTTTCACTAAAAAGATTCACTCCCATGGCTGCTCTCACTGCATCTCC
CACTGTTGGTCTCGCTGAAACATTCACCCGATTGAAGAAGCAAGGCAAAG
TGGCCCTTATTCCATACATCACTGCTGGTGATCCTGACCTTTCAACCACC
GCAGAAGCGTTGAAGTTGCTTGACTCTTGTGGATCAGACATAATTGAACT
GGGTGTTCCATATTCTGATCCTTTAGCAGATGGTCCAGTCATCCAGGCTG
CGGCTACACGATCTTTAGCAAGAGGAACCAACTTCAATGCAATTCTTTCT
ATGTTGAAGGAGGTGGTTCCTCAAATATCTTGTCCAATTGCTTTATTTAC
ATATTACAACCCAATTCTGAAGCGAGGAGTTGATAATTTCATGTCCACAG
TAAGAGACATTGGCATACGTGGGCTTGTGGTTCCAGATGTCCCTCTGGAG
GAGACTGAATCTTTACAGAAGGAAGCCATGAAAAATAAGATTGAGCTGGT
ACTTTTTACAACTCCCACCACTCCAACAGATCGAATGAAAGCCATTGTTG
AAGCATCAGAGGGATTTGTCTATCTTTGTAGCTCAATTGGAGTTACTGGA
GCTCGCGCTTCTATTAGTGGCCATGTTCAACTCTTT
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