FC868726
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_PSEMY (Tryptophan synthase alpha chain OS=Pseudomonas mendocina (strain ymp) GN=trpA PE=3 SV=1) HSP 1 Score: 157.918 bits (398), Expect = 5.166e-38 Identity = 80/191 (41.88%), Postives = 114/191 (59.69%), Query Frame = 2 Query: 161 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTGARASISGHVQ 730 L F LK + + AL+ ++TAGDPD +T+ LK L G+D+IELG+P++DP+ADGP IQ A R+LA L M++E S P+ L YYNPI GV+ F+S ++ G+ GL+V D+P E + L + A ++ + TTPTT DR+ ++ S GFVY S GVTGA A+ HV+ Sbjct: 4 LQNRFAELKAENRAALVTFVTAGDPDYATSLSILKGLPEAGADVIELGMPFTDPMADGPAIQLANIRALAGKQGMQQTLQMVREFRAGNQSTPLVLMGYYNPIFVYGVERFISDAKEAGVDGLIVVDLPPEHNDELCEPAQSAGLDFIRLTTPTTDDDRLPTVLAGSSGFVYYVSVAGVTGAGAATLDHVE 194
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_CARHZ (Tryptophan synthase alpha chain OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=trpA PE=3 SV=1) HSP 1 Score: 157.532 bits (397), Expect = 6.747e-38 Identity = 76/189 (40.21%), Postives = 118/189 (62.43%), Query Frame = 2 Query: 161 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTGARASISGHV 727 + + F + +G+ ALI Y GDP+L+ + E +K L + G+D+IE+G+P+SDPLADGPVIQ A R+LA G+ +L+++ ++S P+ + +Y NPIL+ GVD F+ G GL++PD+P+EE E ++ A ++L+ PTT R++ IV + GF+Y S GVTGAR S+ V Sbjct: 4 IGQVFAEKRSRGEKALIAYTMGGDPNLTFSLEIIKTLAAAGADLIEVGLPFSDPLADGPVIQRAGQRALAAGSGPEEVLALIAAARQELSLPLVIMSYLNPILQIGVDEFLRRAAGAGADGLIIPDLPVEEGEEIRVSAAGYGLDLIPLVAPTTGQKRLEKIVGQASGFIYCVSVTGVTGARDSLPAEV 192
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_PETMO (Tryptophan synthase alpha chain OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=trpA PE=3 SV=1) HSP 1 Score: 157.147 bits (396), Expect = 8.811e-38 Identity = 73/176 (41.48%), Postives = 110/176 (62.50%), Query Frame = 2 Query: 203 ALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTGARASISGHVQ 730 ALI Y+TAGDP+L T E + L+ G DIIE+G+P+SDPLADGP+IQ A+ ++L G I L E+ +++CP+ L YYN IL G+DNF++ + GI G+++PD+P +E E + +N I+ +L P T +R+K I + GF+Y S +GVTG + H++ Sbjct: 13 ALITYVTAGDPNLEVTKEIILELNKDGVDIIEVGIPFSDPLADGPIIQKASQKALKNGVTLKKIFETLNEIKEEVTCPLVLMGYYNSILNYGIDNFITEAVNTGISGVIIPDLPFDEEEEFYAKIKENGIDPILLVAPNTSEERLKEISKVCSGFLYCVSIMGVTGDSQAPMEHLK 188
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_PSEAE (Tryptophan synthase alpha chain OS=Pseudomonas aeruginosa GN=trpA PE=3 SV=3) HSP 1 Score: 156.762 bits (395), Expect = 1.151e-37 Identity = 80/191 (41.88%), Postives = 118/191 (61.78%), Query Frame = 2 Query: 161 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQIS-CPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTGARASISGHVQ 730 L F +LK++ + AL+ ++TAGDPD +++ E LK L + G+D+IELG+P++DP+ADGP IQ A R+L G L M++E S P+ L Y+NPI GV+ F++ +++G+ GL+V D+P E E L A I+ + TTPTT R+ ++E S GFVY S GVTGA A+ HV+ Sbjct: 4 LQTRFAQLKQENRAALVTFVTAGDPDYASSLEILKGLPAAGADVIELGMPFTDPMADGPAIQLANIRALDGGQTLARTLQMVREFRSGDSETPLVLMGYFNPIHHYGVERFIAEAKEVGVDGLIVVDLPPEHNEDLCHPAQAAGIDFIRLTTPTTGDQRLPTVLEGSSGFVYYVSVAGVTGANAATLEHVE 194
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_PSEA8 (Tryptophan synthase alpha chain OS=Pseudomonas aeruginosa (strain LESB58) GN=trpA PE=3 SV=1) HSP 1 Score: 156.377 bits (394), Expect = 1.503e-37 Identity = 78/191 (40.84%), Postives = 118/191 (61.78%), Query Frame = 2 Query: 161 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVP-QISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTGARASISGHVQ 730 L F +LK++ + AL+ ++TAGDPD +++ E LK L + G+D+IELG+P++DP+ADGP IQ A R+L G L M++E + P+ L Y+NPI GV+ F++ +++G+ GL+V D+P E E L A ++ + TTPTT R+ ++E S GFVY S GVTGA A+ HV+ Sbjct: 4 LQTRFAQLKQENRAALVTFVTAGDPDYASSLEILKGLPAAGADVIELGMPFTDPMADGPAIQLANIRALDGGQTLARTLQMVREFRSGESETPLVLMGYFNPIHHYGVERFIAEAKEVGVDGLIVVDLPPEHNEDLCHPAQAAGLDFIRLTTPTTGDQRLPTVLEGSSGFVYYVSVAGVTGANAATLEHVE 194
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_SYNFM (Tryptophan synthase alpha chain OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=trpA PE=3 SV=1) HSP 1 Score: 155.992 bits (393), Expect = 1.963e-37 Identity = 75/178 (42.13%), Postives = 111/178 (62.36%), Query Frame = 2 Query: 167 ETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTG 700 E F +L+K+ + AL+ ++TAGDPD + E ++ + G DI+ELG+P+SDP ADGPVIQ ++TR+L G N + M++E+ PI F+YYNPIL G F D G G+++ D+P EE++ L ++ + L+ PTTP DRM AI +++ GF+YL S GVTG Sbjct: 6 EKFEQLRKRNEKALVGFVTAGDPDPGRSLEIIRTMCRSGVDILELGIPFSDPTADGPVIQRSSTRALKAGMNLSKAFEMIRELRGTCDVPIVAFSYYNPILAYGGAKFYRDALDSGADGVLIVDLPPEESDELTRQWPDRDLALIRLVAPTTPPDRMSAIAQSASGFIYLVSMTGVTG 183
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_RHOPA (Tryptophan synthase alpha chain OS=Rhodopseudomonas palustris GN=trpA PE=3 SV=1) HSP 1 Score: 155.992 bits (393), Expect = 1.963e-37 Identity = 76/188 (40.43%), Postives = 117/188 (62.23%), Query Frame = 2 Query: 152 TVGLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTGARAS 712 T + F LK+QG+ AL+ ++ AGDPDL T+ + LK+L + G+D+IE+G+P++DP+ADGP IQAA R+L GT L ++++ + P+ L YYNPI GVD F++ + G+ GL++ D+P EE E L AMK + + TPTT R+ A++ + GFVY S G+TG+ ++ Sbjct: 2 TTRIDTRFGELKQQGRPALVTFVMAGDPDLDTSLQILKVLPAAGADVIEIGMPFTDPMADGPAIQAAGLRALKAGTTLKKTLGLVRDFRATDNATPLVLMGYYNPIYIYGVDAFLADAKAAGVDGLIIVDLPPEEDEELCLPAMKAGLNFIRLATPTTDEKRLPAVLANTSGFVYYVSITGITGSASA 189
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_PSEAB (Tryptophan synthase alpha chain OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=trpA PE=3 SV=1) HSP 1 Score: 155.992 bits (393), Expect = 1.963e-37 Identity = 79/191 (41.36%), Postives = 118/191 (61.78%), Query Frame = 2 Query: 161 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQIS-CPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTGARASISGHVQ 730 L F +LK++ + AL+ ++TAGDPD +++ E LK L + G+D+IELG+P++DP+ADGP IQ A R+L G L M++E S P+ L Y+NPI GV+ F++ +++G+ GL+V D+P E E L A ++ + TTPTT R+ ++E S GFVY S GVTGA A+ HV+ Sbjct: 4 LQTRFAQLKQENRAALVTFVTAGDPDYASSLEILKGLPAAGADVIELGMPFTDPMADGPAIQLANIRALDGGQTLARTLQMVREFRSGDSETPLVLMGYFNPIHHYGVERFIAEAKEVGVDGLIVVDLPPEHNEDLCHPAQAAGLDFIRLTTPTTGDQRLPTVLEGSSGFVYYVSVAGVTGANAATLEHVE 194
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_OLICO (Tryptophan synthase alpha chain OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=trpA PE=3 SV=1) HSP 1 Score: 155.992 bits (393), Expect = 1.963e-37 Identity = 77/188 (40.96%), Postives = 113/188 (60.11%), Query Frame = 2 Query: 152 TVGLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTGARAS 712 T L F LKK+G+ AL+ ++ GDPDL T+ +K L G+D+IE+G+P++DP+ADGP IQAA R+L GT L +++ + + P+ L YYNPI GVD F+ ++ G+ GL+V D+P EE E L A+K + + TPTT R+ A++ + GFVY S G+TGA A+ Sbjct: 2 TTRLDTRFADLKKEGRAALVTFLMCGDPDLETSLAIMKALPKAGADVIEIGMPFTDPMADGPAIQAAGLRALKAGTTLKKTLDVVRNFRKGEAATPVVLMGYYNPIFIYGVDRFLVDAKEAGVDGLIVVDLPPEEDEELCLPALKAGVNFIRLATPTTDDKRLPAVLANTSGFVYYVSITGITGAAAA 189
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_RHOS5 (Tryptophan synthase alpha chain OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=trpA PE=3 SV=1) HSP 1 Score: 155.606 bits (392), Expect = 2.564e-37 Identity = 81/183 (44.26%), Postives = 111/183 (60.66%), Query Frame = 2 Query: 167 ETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTGARAS 712 +TF RL+ +GK A + YI AGDPDL T+ E +K L G DIIELG+P++DP+ADGP IQ A R+L G L+M++E S PI + YYNPI RGVD F++ ++ GI GL+V D+P EE L A + + TPTT R+ +++ + GFVY S G+TGA A+ Sbjct: 6 DTFRRLRAEGKKAFVAYIMAGDPDLETSLEVMKGLPGAGVDIIELGMPFTDPMADGPTIQTAGQRALEGGQTLARTLAMVREFRRGDASTPIVMMGYYNPIHARGVDRFLAEAQEAGIDGLIVVDLPPEEDAELCLPAQAAGLNFIRLATPTTDDRRLPKVLQNTSGFVYYVSITGITGAAAA 188 The following BLAST results are available for this feature:
BLAST of FC868726 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC868726 ID=FC868726; Name=FC868726; organism=Citrus clementina; type=EST; length=736bpback to top |