FC868726

Overview
NameFC868726
Unique NameFC868726
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15462 contig Ccv1_Contig15462:54..789. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_RHOPT (Tryptophan synthase alpha chain OS=Rhodopseudomonas palustris (strain TIE-1) GN=trpA PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.348e-37
Identity = 76/188 (40.43%), Postives = 116/188 (61.70%), Query Frame = 2
Query:  152 TVGLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTGARAS 712
            T  +   F  LK+QG+ AL+ ++ AGDPDL T+ + LK L + G+D+IE+G+P++DP+ADGP IQAA  R+L  GT     L ++++      + P+ L  YYNPI   GVD F++  +  G+ GL++ D+P EE E L   AMK  +  +   TPTT   R+ A++  + GFVY  S  G+TG+ ++
Sbjct:    2 TTRIDTRFADLKQQGRPALVTFVMAGDPDLDTSLQILKALPAAGADVIEIGMPFTDPMADGPAIQAAGLRALKAGTTLKKTLGLVRDFRATDNATPLVLMGYYNPIYIYGVDAFLADAKAAGVDGLIIVDLPPEEDEELCLPAMKAGLNFIRLATPTTDEKRLPAVLANTSGFVYYVSITGITGSASA 189          
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_PSEA7 (Tryptophan synthase alpha chain OS=Pseudomonas aeruginosa (strain PA7) GN=trpA PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.373e-37
Identity = 79/191 (41.36%), Postives = 114/191 (59.69%), Query Frame = 2
Query:  161 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTGARASISGHVQ 730
            L   F +LK+  + AL+ ++TAGDPD   + E LK L + G+D+IELG+P++DP+ADGP IQ A  R+L  G      L M++E        P+ L  Y+NPI   GV+ F++  ++ G+ GL+V D+P E  E L   A    I+ +  TTPTT  +R+  ++E S GFVY  S  GVTGA A+   HV+
Sbjct:    4 LQTRFAQLKQDNRAALVTFVTAGDPDYDASLEILKGLPAAGADVIELGMPFTDPMADGPAIQLANIRALQGGQTLAKTLRMVREFRAGDSDTPLVLMGYFNPIHHYGVERFVTEAKEAGVDGLIVVDLPPEHNEDLCHPAQAAGIDFIRLTTPTTGDERLPTVLEGSSGFVYYVSVAGVTGANAATLEHVE 194          
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_PSE14 (Tryptophan synthase alpha chain OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=trpA PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.711e-37
Identity = 79/190 (41.58%), Postives = 116/190 (61.05%), Query Frame = 2
Query:  161 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTGARASISGHV 727
            L + F +LK +G+ AL+ +ITAGDP   T+ + LK L + G+D+IELG+P++DP+ADG  IQ A  R+L  G      L M+ E  V   + PI L  YYNPI + GV+ F++  ++ G+ GL++ D+P E    L   A  + I+ +  TTPTT   R+  ++E S GFVY  S  GVTGA ++ + HV
Sbjct:    4 LEQRFAQLKTEGRAALVTFITAGDPGYDTSLQVLKGLPAAGADVIELGMPFTDPMADGVAIQLATLRALDAGQTLQKTLQMVSEFRVDDQTTPIVLMGYYNPIHRFGVEAFVAQAKEAGVDGLIIVDLPPEHDAELATPAQASGIDFIRLTTPTTDDARLPRVLERSSGFVYYVSVAGVTGAGSATTEHV 193          
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_BACSK (Tryptophan synthase alpha chain OS=Bacillus clausii (strain KSM-K16) GN=trpA PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.711e-37
Identity = 81/184 (44.02%), Postives = 118/184 (64.13%), Query Frame = 2
Query:  188 KQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-ISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTGARASISGHVQLF 736
            K+G +  IP+ITAGDP    T      L   G+D++ELG+PYSDPLADGPVIQ A+ R+LA G      ++++ E+  + ++ P+ +FTY NP+L+ G + F  T  D GI GL+VPD+P EE+E+L  E  K  + L+    PT+   R+KAI   ++GF+Y  SS+GVTGAR ++   V+ F
Sbjct:   10 KKGNL-FIPFITAGDPVREATIALALSLQRSGADVLELGIPYSDPLADGPVIQNASKRALAGGMTLAKAMALVPEMRKEGLTIPVIVFTYANPLLQFGFERFCETACDYGIDGLLVPDLPFEESETLANECEKQGLALISLVAPTS-QQRIKAIASRAQGFLYCVSSLGVTGARKTLHPQVEAF 191          
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_PSEU5 (Tryptophan synthase alpha chain OS=Pseudomonas stutzeri (strain A1501) GN=trpA PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 7.459e-37
Identity = 81/191 (42.41%), Postives = 116/191 (60.73%), Query Frame = 2
Query:  161 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTGARASISGHVQ 730
            L   F  LK+Q + AL+ +ITAGDPD +T+ + LK L + G+D+IELG+P++DP+ADGP IQ A  R+LA   +    L M++E      + PI L  Y+NPI K GV+ F++   + G+ GL+V D+P E  E L   A    I+ +  TTPTT   R+  ++  S GFVY  S  GVTGA ++   HV+
Sbjct:    4 LLTRFDELKQQNRAALVTFITAGDPDYATSLQILKGLPAAGADVIELGMPFTDPMADGPAIQLANIRALAAKQDLAKTLQMVREFRQDDQTTPIVLMGYFNPIHKMGVERFIAEAVEAGVDGLIVVDLPPEHNEDLCDPAQAAGIDFIRLTTPTTDDKRLPVVLNGSSGFVYYVSVAGVTGAGSATLEHVE 194          
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_PSEU2 (Tryptophan synthase alpha chain OS=Pseudomonas syringae pv. syringae (strain B728a) GN=trpA PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.272e-36
Identity = 79/190 (41.58%), Postives = 115/190 (60.53%), Query Frame = 2
Query:  161 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTGARASISGHV 727
            L   F +LK +G+ AL+ +ITAGDP   T+ + LK L + G+D+IELG+P++DP+ADG  IQ A  R+L  G      L M+ E  V   + PI L  YYNPI + GV+ F++  ++ G+ GL++ D+P E    L   A  + I+ +  TTPTT   R+  ++E S GFVY  S  GVTGA ++ + HV
Sbjct:    4 LEHRFAQLKTEGRAALVTFITAGDPGYDTSLKVLKGLPAAGADVIELGMPFTDPMADGVAIQLATLRALDAGQTLQKTLQMVSEFRVDDQTTPIVLMGYYNPIHRFGVEAFVAQAKEAGVDGLIIVDLPPEHDAELATPAQASGIDFIRLTTPTTDDARLPRVLERSSGFVYYVSVAGVTGAGSATTEHV 193          
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_RHOPS (Tryptophan synthase alpha chain OS=Rhodopseudomonas palustris (strain BisB5) GN=trpA PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.662e-36
Identity = 77/193 (39.90%), Postives = 117/193 (60.62%), Query Frame = 2
Query:  152 TVGLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTGARASISGHV 727
            T  +   F  LKKQG+ A + ++ AGDPDL+T+ + LK L + G+DIIE+G+P++DP+ADGP IQAA  R+L  G   +  L ++++      + P+ L  YYNPI   GVD F++  +  G+ GL++ D+P EE   L   AMK  +  +   TPTT   R+ A++  + GFVY  S  G+TG+ ++ S  V
Sbjct:    2 TTRIDTRFAELKKQGRSAFVTFVMAGDPDLATSLQVLKALPAAGADIIEIGMPFTDPMADGPAIQAAGLRALHSGATLSHTLGLVRDFRKDDDTTPMVLMGYYNPIYIYGVDAFLADAKAAGVDGLIIVDLPPEEDSELCLPAMKAGLNFIRLATPTTDEKRLPAVLANTSGFVYYVSITGITGSASADSAAV 194          
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_PSEPW (Tryptophan synthase alpha chain OS=Pseudomonas putida (strain W619) GN=trpA PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.662e-36
Identity = 78/190 (41.05%), Postives = 115/190 (60.53%), Query Frame = 2
Query:  161 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTGARASISGHV 727
            L + F  LK +G+ AL+ ++TAGDP    + + LK L + G+D+IELG+P++DP+ADG  IQ A  R+L  G N    L M++E  V   + PI L  YYNPI + GV+ F++  ++ G+ GL++ D+P E    L   A    I+ +  TTPTT   R+  ++E S GFVY  S  GVTGA ++ + HV
Sbjct:    4 LEQRFAELKAEGRSALVTFVTAGDPGYDASLQILKGLPAAGADVIELGMPFTDPMADGVAIQLATLRALEAGQNLAKTLQMVREFRVDNQATPIVLMGYYNPIHRFGVEKFVAEAKEAGVDGLIIVDLPPEHDAELATPAQAAGIDFIRLTTPTTDDARLPRVLERSSGFVYYVSVAGVTGAGSATTEHV 193          
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_AZOBR (Tryptophan synthase alpha chain OS=Azospirillum brasilense GN=trpA PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.662e-36
Identity = 78/185 (42.16%), Postives = 112/185 (60.54%), Query Frame = 2
Query:  161 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTGARAS 712
            +A  F  LK +G+  L+ +ITAGDPDL T    L  L + G+D+IELG+P+SDP+ADGP IQAA+ R+L  GT     L +++         P+ L  YYNPI   GVD F++   + G+ GL+V D+P EE E L   A+K  +  +   TPTT   R+ A+++ + GFVY  S  G+TGA ++
Sbjct:   14 IARRFAALKAEGRAGLVTFITAGDPDLETCRAVLHGLPAAGADLIELGLPFSDPMADGPAIQAASLRALHAGTTARKTLDLVRGFRETDADTPVILMGYYNPIHAYGVDRFLADAIEAGVDGLIVVDLPPEEDEELCIPALKAGVNFIRLATPTTDDKRLPAVLQNTSGFVYYVSIAGITGAASA 198          
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_GEOSM (Tryptophan synthase alpha chain OS=Geobacter sp. (strain M21) GN=trpA PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.170e-36
Identity = 72/186 (38.71%), Postives = 115/186 (61.83%), Query Frame = 2
Query:  161 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTGARASIS 718
            +++ F  LK++G+ AL+ ++TAGDPDL+TT + +  L+  G+D++ELGVP+SDP+ADGP IQ ++ R+LA GT   AIL ++  +  +   PI L  Y+NPI   G + F       G+  L+V D+P EE   L+       ++L+   TPT+ + R+  +     GF+Y  S  GVTGAR++++
Sbjct:    4 ISDRFASLKERGEKALVTFVTAGDPDLATTEKVVLELERAGADLVELGVPFSDPMADGPTIQLSSDRALASGTTLPAILELVSRLREKTQVPIVLMGYFNPIFAYGSERFAFDAAQAGVDALLVVDLPPEEAAELKGATDSCGLDLIFLLTPTSDSSRVAMVARQGSGFIYYVSVTGVTGARSAVA 189          
The following BLAST results are available for this feature:
BLAST of FC868726 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TRPA_RHOPT3.348e-3740.43Tryptophan synthase alpha chain OS=Rhodopseudomona... [more]
TRPA_PSEA74.373e-3741.36Tryptophan synthase alpha chain OS=Pseudomonas aer... [more]
TRPA_PSE145.711e-3741.58Tryptophan synthase alpha chain OS=Pseudomonas syr... [more]
TRPA_BACSK5.711e-3744.02Tryptophan synthase alpha chain OS=Bacillus clausi... [more]
TRPA_PSEU57.459e-3742.41Tryptophan synthase alpha chain OS=Pseudomonas stu... [more]
TRPA_PSEU21.272e-3641.58Tryptophan synthase alpha chain OS=Pseudomonas syr... [more]
TRPA_RHOPS1.662e-3639.90Tryptophan synthase alpha chain OS=Rhodopseudomona... [more]
TRPA_PSEPW1.662e-3641.05Tryptophan synthase alpha chain OS=Pseudomonas put... [more]
TRPA_AZOBR1.662e-3642.16Tryptophan synthase alpha chain OS=Azospirillum br... [more]
TRPA_GEOSM2.170e-3638.71Tryptophan synthase alpha chain OS=Geobacter sp. (... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31004A09EF AbioticL1 Citrus clementina cDNA clone C31004A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868726 ID=FC868726; Name=FC868726; organism=Citrus clementina; type=EST; length=736bp
AACACTGTCTGAAATGGCTCCGCTGCAAGCAACAACTAACTTCGTCCATC
TCAAGAACCCACATGCTCATTATCTCCCTCGGCTCCCCTGTCACAAATCT
ACTCTTTCACTAAAAAGATTCACTCCCATGGCTGCTCTCACTGCATCTCC
CACTGTTGGTCTCGCTGAAACATTCACCCGATTGAAGAAGCAAGGCAAAG
TGGCCCTTATTCCATACATCACTGCTGGTGATCCTGACCTTTCAACCACC
GCAGAAGCGTTGAAGTTGCTTGACTCTTGTGGATCAGACATAATTGAACT
GGGTGTTCCATATTCTGATCCTTTAGCAGATGGTCCAGTCATCCAGGCTG
CGGCTACACGATCTTTAGCAAGAGGAACCAACTTCAATGCAATTCTTTCT
ATGTTGAAGGAGGTGGTTCCTCAAATATCTTGTCCAATTGCTTTATTTAC
ATATTACAACCCAATTCTGAAGCGAGGAGTTGATAATTTCATGTCCACAG
TAAGAGACATTGGCATACGTGGGCTTGTGGTTCCAGATGTCCCTCTGGAG
GAGACTGAATCTTTACAGAAGGAAGCCATGAAAAATAAGATTGAGCTGGT
ACTTTTTACAACTCCCACCACTCCAACAGATCGAATGAAAGCCATTGTTG
AAGCATCAGAGGGATTTGTCTATCTTTGTAGCTCAATTGGAGTTACTGGA
GCTCGCGCTTCTATTAGTGGCCATGTTCAACTCTTT
back to top