FC868726

Overview
NameFC868726
Unique NameFC868726
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_GEOBB (Tryptophan synthase alpha chain OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=trpA PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.170e-36
Identity = 73/186 (39.25%), Postives = 115/186 (61.83%), Query Frame = 2
Query:  161 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTGARASIS 718
            +++ F  LK++G+ AL+ ++TAGDPDL+TT + +  L+  G+D+IELGVP+SDP+ADGP IQ ++ R+LA GT   AIL ++  +  +   PI L  Y+NPI   G + F       G+  L+V D+P EE   L+       ++L+   TPT+   R+ ++     GF+Y  S  GVTGAR++++
Sbjct:    4 ISDRFASLKERGEKALVTFVTAGDPDLATTEKVVLELERAGADLIELGVPFSDPMADGPTIQLSSDRALASGTTLPAILELVSRLREKTQVPIVLMGYFNPIFAYGSERFAFDAAQAGVDALLVVDLPPEEAAELKGATDSCGLDLIFLLTPTSDGSRIASVARQGSGFIYYVSVTGVTGARSAVA 189          
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_PSEPF (Tryptophan synthase alpha chain OS=Pseudomonas fluorescens (strain Pf0-1) GN=trpA PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.835e-36
Identity = 80/191 (41.88%), Postives = 112/191 (58.64%), Query Frame = 2
Query:  161 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQIS-CPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTGARASISGHVQ 730
            L   F  LK+Q + AL+ ++TAGDPD  T+   LK L   G+D+IELG+P++DP+ADGP IQ A  R+L    N    L M++E     S  P+ L  Y+NPI K GV+ F++  ++ G+ GL+V D+P E    L   A    I+ +  TTPTT   R+  ++  S GFVY  S  GVTGA A+   HV+
Sbjct:    4 LQTRFAELKEQNRAALVTFVTAGDPDYDTSLAILKGLPKAGADVIELGMPFTDPMADGPAIQLANIRALGAKQNLTKTLQMVREFREGNSDTPLVLMGYFNPIHKFGVERFIAEAKEAGVDGLIVVDMPPEHNSELCDPAQAAGIDFIRLTTPTTDDARLPKVLNGSSGFVYYVSVAGVTGAGAATLEHVE 194          
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_PELPD (Tryptophan synthase alpha chain OS=Pelobacter propionicus (strain DSM 2379) GN=trpA PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.835e-36
Identity = 77/186 (41.40%), Postives = 108/186 (58.06%), Query Frame = 2
Query:  161 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTGARASIS 718
            L   F  LK++   AL+ +ITAGDPDL+TT   + LL   G+DIIELG+P+SDP+ADGP IQ ++ R+LA  T    IL+M++ V      PI L  Y NPI   G + F +   + G+ G++V D+P EE ES    A    +++    TPT+   R+  +     GFVY  +  GVTGAR  +S
Sbjct:    4 LTHCFNELKQRNTKALVTFITAGDPDLATTQAMIPLLQQAGADIIELGMPFSDPMADGPTIQLSSERALAASTTLERILAMVRAVRRSCQVPIVLMGYLNPIHAYGYERFANDAAEAGVDGVLVVDMPPEEAESFLNHANARDLQVAFLLTPTSTDSRIATVGRLGRGFVYYVTVTGVTGARQQVS 189          
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_JANSC (Tryptophan synthase alpha chain OS=Jannaschia sp. (strain CCS1) GN=trpA PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.835e-36
Identity = 79/182 (43.41%), Postives = 109/182 (59.89%), Query Frame = 2
Query:  167 ETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTGARA 709
            +TF RL   GK A + YI AGDPD +T+ E ++ L + G DIIELG+P++DP+ADG  IQ A  R+L  G   +  L M+++      + PI L  YYNPI  RGVD F++  R+ GI GL+V D+P EE E L   A    +  +   TPTT   R+ A++  + GF+Y  S  G+TGA A
Sbjct:    6 DTFARLSASGKKAFVSYIMAGDPDYATSLEVMRGLPAAGVDIIELGLPFTDPMADGSTIQLAGQRALDGGMTLDKTLQMVRDFRAGDDTTPIVLMGYYNPIYSRGVDRFLTDAREAGIDGLIVVDLPPEEDEELCIPAQAAGLNFIRLATPTTDDARLPAVLSNTSGFLYYVSITGITGAAA 187          
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_CHLAD (Tryptophan synthase alpha chain OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=trpA PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.835e-36
Identity = 71/190 (37.37%), Postives = 118/190 (62.11%), Query Frame = 2
Query:  161 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTGARASISGHV 727
            + ETF RL+  G++AL+PY+T G P+  +T E +  L++ G+ + ELG+P+SDPLADG  IQ A  R+L  G      ++ + ++    +  P+ L  YYNP+L+ G++   + +   G  G ++PD+PLEE   L+  A  + ++L++F  PTTP  R+  IV  + GF+Y+ S  GVTGAR +++ ++
Sbjct:    4 ITETFARLRSSGRIALMPYLTVGFPERESTLELVPALEAAGASLFELGIPFSDPLADGATIQRATQRALENGVTIADCITTVAQLRARNVKAPLLLMGYYNPLLRYGLERACAELAAAGGDGWIIPDLPLEEAAELRPIAAAHHLDLIMFIAPTTPPTRITQIVAHASGFLYIVSLTGVTGARQTLAANL 193          
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_PSEPK (Tryptophan synthase alpha chain OS=Pseudomonas putida (strain KT2440) GN=trpA PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.702e-36
Identity = 78/190 (41.05%), Postives = 114/190 (60.00%), Query Frame = 2
Query:  161 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTGARASISGHV 727
            L + F  LK +G+ AL+ ++TAGDP    + + LK L + G+D+IELG+P++DP+ADG  IQ A  R+L  G      L M++E  V   + PI L  YYNPI + GVD F++  ++ G+ GL++ D+P E    L   A    I+ +  TTPTT   R+  ++E S GFVY  S  GVTGA ++ + HV
Sbjct:    4 LEQRFAELKAEGRSALVTFVTAGDPGYDASLQILKGLPAAGADVIELGMPFTDPMADGVAIQLATLRALEAGQTLVKTLQMVREFRVDNQTTPIVLMGYYNPIHRFGVDTFVTQAKEAGVDGLIIVDLPPEHDAELATPAQAAGIDFIRLTTPTTDDARLPRVLERSSGFVYYVSVAGVTGAGSATTEHV 193          
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_DESOH (Tryptophan synthase alpha chain OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=trpA PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.702e-36
Identity = 76/189 (40.21%), Postives = 111/189 (58.73%), Query Frame = 2
Query:  161 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTGARASISGHV 727
            + ETF RL  + + AL+ ++TAGDP + T+   ++ +   G DI+ELGVP+SDP ADGPVIQ ++ R+LA GTN   +  M   +      PI LF+YYNPI + G +NF    +  G  G++V D+P EE+  L      +   L+    PTTP  R+ AI  ++ GF+YL S  GVTG+    + H+
Sbjct:    4 ITETFDRLAAKKEKALVGFVTAGDPAIETSEAIIRAMCEAGIDILELGVPFSDPTADGPVIQRSSQRALANGTNLQTVFDMTATLRKTFQGPIILFSYYNPIFRYGAENFYRDAKQAGADGVLVVDLPPEESAELTSCWKGDDFALIRLLAPTTPDGRIGAIAASASGFLYLVSMTGVTGSSGLDTTHI 192          
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_PSESM (Tryptophan synthase alpha chain OS=Pseudomonas syringae pv. tomato GN=trpA PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.835e-36
Identity = 78/190 (41.05%), Postives = 115/190 (60.53%), Query Frame = 2
Query:  161 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTGARASISGHV 727
            L + F +LK +G+  L+ +ITAGDP   T+ + LK L + G+D+IELG+P++DP+ADG  IQ A  R+L  G      L M+ E  V   + PI L  YYNPI + GV+ F++  ++ G+ GL++ D+P E    L   A  + I+ +  TTPTT   R+  ++E S GFVY  S  GVTGA ++ + HV
Sbjct:    4 LEQRFAQLKTEGRAVLVTFITAGDPGYDTSLKVLKGLPAAGADVIELGMPFTDPMADGVAIQLATLRALDAGQTLLKTLQMVSEFRVDDQTTPIVLMGYYNPIHRFGVEAFVAQAKEAGVDGLIIVDLPPEHDAELATPAQASGIDFIRLTTPTTDDARLPRVLERSSGFVYYVSVAGVTGAGSATTEHV 193          
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_PSEE4 (Tryptophan synthase alpha chain OS=Pseudomonas entomophila (strain L48) GN=trpA PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.835e-36
Identity = 78/190 (41.05%), Postives = 114/190 (60.00%), Query Frame = 2
Query:  161 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTGARASISGHV 727
            L + F  LK +G+ AL+ ++TAGDP    + E LK L + G+D+IELG+P++DP+ADG  IQ A  R+L  G      L M++E  V   + PI L  YYNPI + GV+ F++  ++ G+ GL++ D+P E    L   A    I+ +  TTPTT   R+  ++E S GFVY  S  GVTGA ++ + HV
Sbjct:    4 LEQRFAELKAEGRSALVTFVTAGDPGYDASLEILKGLPAAGADVIELGMPFTDPMADGVAIQLATLRALEAGQTLAKTLQMVREFRVGNQTTPIVLMGYYNPIHRFGVEQFVAEAKEAGVDGLIIVDLPPEHDAELATPAQAAGIDFIRLTTPTTDDARLPRVLERSSGFVYYVSVAGVTGAGSATTEHV 193          
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_RHOP2 (Tryptophan synthase alpha chain OS=Rhodopseudomonas palustris (strain HaA2) GN=trpA PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 6.315e-36
Identity = 74/183 (40.44%), Postives = 115/183 (62.84%), Query Frame = 2
Query:  173 FTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTGARASIS 718
            F +LK++G+ A + ++ AGDPDL+T+ + LK L + G+DIIE+G+P++DP+ADGP IQAA  R+L  GT  +  L ++ +      + P+ L  YYNPI   GVD F++  +  G+ GL++ D+P EE   L   AMK  +  +   TPTT   R+ A++  + GFVY  S  G+TG+ ++ S
Sbjct:    9 FAQLKREGRPAFVTFVMAGDPDLATSLQLLKALPTAGADIIEIGMPFTDPMADGPAIQAAGLRALHGGTTLHKTLELVGDFRKDDATTPVVLMGYYNPIYIYGVDAFLADAKAAGVDGLIIVDLPPEEDAELCLPAMKAGLNFIRLATPTTDEKRLPAVLANTSGFVYYVSITGITGSASADS 191          
The following BLAST results are available for this feature:
BLAST of FC868726 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TRPA_GEOBB2.170e-3639.25Tryptophan synthase alpha chain OS=Geobacter bemid... [more]
TRPA_PSEPF2.835e-3641.88Tryptophan synthase alpha chain OS=Pseudomonas flu... [more]
TRPA_PELPD2.835e-3641.40Tryptophan synthase alpha chain OS=Pelobacter prop... [more]
TRPA_JANSC2.835e-3643.41Tryptophan synthase alpha chain OS=Jannaschia sp. ... [more]
TRPA_CHLAD2.835e-3637.37Tryptophan synthase alpha chain OS=Chloroflexus ag... [more]
TRPA_PSEPK3.702e-3641.05Tryptophan synthase alpha chain OS=Pseudomonas put... [more]
TRPA_DESOH3.702e-3640.21Tryptophan synthase alpha chain OS=Desulfococcus o... [more]
TRPA_PSESM4.835e-3641.05Tryptophan synthase alpha chain OS=Pseudomonas syr... [more]
TRPA_PSEE44.835e-3641.05Tryptophan synthase alpha chain OS=Pseudomonas ent... [more]
TRPA_RHOP26.315e-3640.44Tryptophan synthase alpha chain OS=Rhodopseudomona... [more]

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Properties
Property NameValue
Genbank descriptionC31004A09EF AbioticL1 Citrus clementina cDNA clone C31004A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868726 ID=FC868726; Name=FC868726; organism=Citrus clementina; type=EST; length=736bp
AACACTGTCTGAAATGGCTCCGCTGCAAGCAACAACTAACTTCGTCCATC
TCAAGAACCCACATGCTCATTATCTCCCTCGGCTCCCCTGTCACAAATCT
ACTCTTTCACTAAAAAGATTCACTCCCATGGCTGCTCTCACTGCATCTCC
CACTGTTGGTCTCGCTGAAACATTCACCCGATTGAAGAAGCAAGGCAAAG
TGGCCCTTATTCCATACATCACTGCTGGTGATCCTGACCTTTCAACCACC
GCAGAAGCGTTGAAGTTGCTTGACTCTTGTGGATCAGACATAATTGAACT
GGGTGTTCCATATTCTGATCCTTTAGCAGATGGTCCAGTCATCCAGGCTG
CGGCTACACGATCTTTAGCAAGAGGAACCAACTTCAATGCAATTCTTTCT
ATGTTGAAGGAGGTGGTTCCTCAAATATCTTGTCCAATTGCTTTATTTAC
ATATTACAACCCAATTCTGAAGCGAGGAGTTGATAATTTCATGTCCACAG
TAAGAGACATTGGCATACGTGGGCTTGTGGTTCCAGATGTCCCTCTGGAG
GAGACTGAATCTTTACAGAAGGAAGCCATGAAAAATAAGATTGAGCTGGT
ACTTTTTACAACTCCCACCACTCCAACAGATCGAATGAAAGCCATTGTTG
AAGCATCAGAGGGATTTGTCTATCTTTGTAGCTCAATTGGAGTTACTGGA
GCTCGCGCTTCTATTAGTGGCCATGTTCAACTCTTT
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