FC868726

Overview
NameFC868726
Unique NameFC868726
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_BACSU (Tryptophan synthase alpha chain OS=Bacillus subtilis GN=trpA PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 6.315e-36
Identity = 80/177 (45.20%), Postives = 113/177 (63.84%), Query Frame = 2
Query:  209 IPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-ISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTGARASISGHVQLF 736
            IP+ITAGDP    + E  K L   G+  +ELGV YSDPLADGPVIQ A+ R+L +G N    + +  E+    ++ PI LFTYYNP+L+   + F + +R+  I GL+VPD+PLEE+ SLQ+E   +++  +    PT+ + R+K I+E +EGFVY  SS+GVTG R   +  V  F
Sbjct:   14 IPFITAGDPVPEVSIELAKSLQKAGATALELGVAYSDPLADGPVIQRASKRALDQGMNIVKAIELGGEMKKNGVNIPIILFTYYNPVLQLNKEYFFALLRENHIDGLLVPDLPLEESNSLQEECKSHEVTYISLVAPTSES-RLKTIIEQAEGFVYCVSSLGVTGVRNEFNSSVYPF 189          
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_PSEP1 (Tryptophan synthase alpha chain OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=trpA PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 8.247e-36
Identity = 78/190 (41.05%), Postives = 113/190 (59.47%), Query Frame = 2
Query:  161 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTGARASISGHV 727
            L + F  LK +G+ AL+ ++TAGDP    + + LK L + G+D+IELG+P++DP+ADG  IQ A  R+L  G      L M++E  V   + PI L  YYNPI + GVD F++  +  G+ GL++ D+P E    L   A    I+ +  TTPTT   R+  ++E S GFVY  S  GVTGA ++ + HV
Sbjct:    4 LEQRFAELKAEGRSALVTFVTAGDPGYDASLQILKGLPAAGADVIELGMPFTDPMADGVAIQLATLRALEAGQTLAKTLQMVREFRVDNQTTPIVLMGYYNPIHRFGVDTFVAEAKAAGVDGLIIVDLPPEHDAELATPAQAAGIDFIRLTTPTTDDARLPRVLERSSGFVYYVSVAGVTGAGSATTEHV 193          
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_METM6 (Tryptophan synthase alpha chain OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=trpA PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 8.247e-36
Identity = 73/172 (42.44%), Postives = 109/172 (63.37%), Query Frame = 2
Query:  197 KVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTGARAS 712
            K  L+ ++ +GDP+   T + +K LD   S +IELG+P+SDP+ADGP IQAA  R+L+ G        +LKE   + + P+ L TYYNP+ KRG++NF+ + ++ G  GLV+ D+PL+E    ++   K+++  V    P TP DR+K   EAS  F+YL S+ G+TGAR S
Sbjct:    3 KPVLVSFLVSGDPNPDATLKFMKTLDKY-SGVIELGIPFSDPVADGPTIQAADVRALSNGFKIAKSFEVLKEFRKESNTPVILMTYYNPVYKRGIENFVISAKEAGANGLVIVDLPLQEATEYREICKKHEMGTVFLAAPNTPEDRLKTSDEASTEFLYLISTFGITGARES 173          
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_CLOK5 (Tryptophan synthase alpha chain OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=trpA PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.077e-35
Identity = 71/186 (38.17%), Postives = 111/186 (59.68%), Query Frame = 2
Query:  173 FTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTGARASISGHVQ 730
            F  LK QGK ALIP+ITAGDP L TT   +  +D  G+DI+E+G+PYSDPLADGP+IQ ++ R++  G     I+  ++++  +   P+    YY+ I K G++ F++    +GI G+++PD+P+EE   +    +K ++ L+    PT+   R++ I     GFVY  S  GVTG    I   ++
Sbjct:    8 FKELKDQGKKALIPFITAGDPSLDTTVNIVLEMDKKGADIVEIGIPYSDPLADGPIIQGSSQRAIKGGAKIRNIMETVRKIRGKSEIPLVYMVYYSSIFKYGLERFIAEASAVGINGIIIPDLPIEERGDIMDITVKYEVHLIPLVAPTSKR-RIQEIAAGGSGFVYCVSKNGVTGVGEKIKTDIK 192          
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_CLOK1 (Tryptophan synthase alpha chain OS=Clostridium kluyveri (strain NBRC 12016) GN=trpA PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.077e-35
Identity = 71/186 (38.17%), Postives = 111/186 (59.68%), Query Frame = 2
Query:  173 FTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTGARASISGHVQ 730
            F  LK QGK ALIP+ITAGDP L TT   +  +D  G+DI+E+G+PYSDPLADGP+IQ ++ R++  G     I+  ++++  +   P+    YY+ I K G++ F++    +GI G+++PD+P+EE   +    +K ++ L+    PT+   R++ I     GFVY  S  GVTG    I   ++
Sbjct:    8 FKELKDQGKKALIPFITAGDPSLDTTVNIVLEMDKKGADIVEIGIPYSDPLADGPIIQGSSQRAIKGGAKIRNIMETVRKIRGKSEIPLVYMVYYSSIFKYGLERFIAEASAVGINGIIIPDLPIEERGDIMDITVKYEVHLIPLVAPTSKR-RIQEIAAGGSGFVYCVSKNGVTGVGEKIKTDIK 192          
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_RHOS4 (Tryptophan synthase alpha chain OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=trpA PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.407e-35
Identity = 77/188 (40.96%), Postives = 109/188 (57.98%), Query Frame = 2
Query:  167 ETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTGARASISGHV 727
            +TF RL+ +GK A + YI AGDPDL T+   ++ L   G DIIELG+P++DP+ADGP IQ A  R+L  G      L M++         PI +  YYNPI  RGV+ F++   + GI GL+V D+P EE   L   A    +  +   TPTT + R+  +++ + GFVY  S  G+TGA A+ +  V
Sbjct:    6 DTFRRLRAEGKKAFVAYIMAGDPDLETSLAVMRGLPEAGVDIIELGMPFTDPMADGPTIQTAGQRALEGGQTLTRTLEMVRAFRAENAETPIVMMGYYNPIYARGVETFLAEATEAGIDGLIVVDLPPEEDAELCLPAQAAGLNFIRLATPTTDSRRLPKVLQNTSGFVYYVSITGITGAAAAQAADV 193          
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_RHOS1 (Tryptophan synthase alpha chain OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=trpA PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.407e-35
Identity = 77/188 (40.96%), Postives = 109/188 (57.98%), Query Frame = 2
Query:  167 ETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTGARASISGHV 727
            +TF RL+ +GK A + YI AGDPDL T+   ++ L   G DIIELG+P++DP+ADGP IQ A  R+L  G      L M++         PI +  YYNPI  RGV+ F++   + GI GL+V D+P EE   L   A    +  +   TPTT + R+  +++ + GFVY  S  G+TGA A+ +  V
Sbjct:    6 DTFRRLRAEGKKAFVAYIMAGDPDLETSLAVMRGLPEAGVDIIELGMPFTDPMADGPTIQTAGQRALEGGQTLTRTLEMVRAFRAENAETPIVMMGYYNPIYARGVETFLAEATEAGIDGLIVVDLPPEEDAELCLPAQAAGLNFIRLATPTTDSRRLPKVLQNTSGFVYYVSITGITGAAAAQAADV 193          
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_PSEPU (Tryptophan synthase alpha chain OS=Pseudomonas putida GN=trpA PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.407e-35
Identity = 77/190 (40.53%), Postives = 113/190 (59.47%), Query Frame = 2
Query:  161 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTGARASISGHV 727
            L + F  LK +G+ AL+ ++TAGDP    + + LK L + G+D+IELG+P++DP+ADG  IQ A  R+L  G      L M++E  V   + PI L  YYNPI + GV+ F++  +  G+ GL++ D+P E    L   A    I+ +  TTPTT   R+  ++E S GFVY  S  GVTGA ++ + HV
Sbjct:    4 LEQRFAELKAEGRSALVTFVTAGDPGYDASLQILKGLPAAGADVIELGMPFTDPMADGVAIQLATLRALEAGQTLAKTLQMVREFRVDNHTTPIVLMGYYNPIHRFGVEKFVAEAKQAGVDGLIIVDLPPEHDAELATPAQAAGIDFIRLTTPTTDDARLPRVLERSSGFVYYVSVAGVTGAGSATTEHV 193          
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_METB6 (Tryptophan synthase alpha chain OS=Methanoregula boonei (strain 6A8) GN=trpA PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.407e-35
Identity = 75/177 (42.37%), Postives = 109/177 (61.58%), Query Frame = 2
Query:  188 KQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTGARASIS 718
            K+GK A I +  AGDPD  T+    K L   G+DI+E GVP+SDP+ADGP IQ A  R+LA  T  + I ++++EV      PI   TYYN I +RG+D F     + G+ G++V D+P+EE++ +   A K  I+ +   T TT  +RM  IV  + G++YL S +GVTGAR +++
Sbjct:   11 KKGKSAFIGFTVAGDPDKETSIRIAKALIDGGTDILEFGVPFSDPVADGPTIQRADDRALASCTTPDTIFAIVREVRAYSEVPIVFLTYYNTIYRRGIDRFYLEAHEAGVDGILVADMPVEESDEVAATAEKYGIDPIFLVTQTTSNERMDTIVRHARGYLYLVSVLGVTGARKTVA 187          
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_RHOSK (Tryptophan synthase alpha chain OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=trpA PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.837e-35
Identity = 76/183 (41.53%), Postives = 107/183 (58.47%), Query Frame = 2
Query:  167 ETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTGARAS 712
            +TF RL+ +GK A + YI AGDPDL T+   ++ L   G DIIELG+P++DP+ADGP IQ A  R+L  G      L M++         PI +  YYNPI  RGV+ F++   + GI GL+V D+P EE   L   A    +  +   TPTT + R+  +++ + GFVY  S  G+TGA A+
Sbjct:    6 DTFRRLRAEGKKAFVAYIMAGDPDLETSLAVMRGLPEAGVDIIELGMPFTDPMADGPTIQTAGQRALEGGQTLTRTLEMVRAFRAENAETPIVMMGYYNPIYARGVETFLAEATEAGIDGLIVVDLPPEEDAELCLPAQAAGLNFIRLATPTTDSRRLPKVLQNTSGFVYYVSITGITGAAAA 188          
The following BLAST results are available for this feature:
BLAST of FC868726 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TRPA_BACSU6.315e-3645.20Tryptophan synthase alpha chain OS=Bacillus subtil... [more]
TRPA_PSEP18.247e-3641.05Tryptophan synthase alpha chain OS=Pseudomonas put... [more]
TRPA_METM68.247e-3642.44Tryptophan synthase alpha chain OS=Methanococcus m... [more]
TRPA_CLOK51.077e-3538.17Tryptophan synthase alpha chain OS=Clostridium klu... [more]
TRPA_CLOK11.077e-3538.17Tryptophan synthase alpha chain OS=Clostridium klu... [more]
TRPA_RHOS41.407e-3540.96Tryptophan synthase alpha chain OS=Rhodobacter sph... [more]
TRPA_RHOS11.407e-3540.96Tryptophan synthase alpha chain OS=Rhodobacter sph... [more]
TRPA_PSEPU1.407e-3540.53Tryptophan synthase alpha chain OS=Pseudomonas put... [more]
TRPA_METB61.407e-3542.37Tryptophan synthase alpha chain OS=Methanoregula b... [more]
TRPA_RHOSK1.837e-3541.53Tryptophan synthase alpha chain OS=Rhodobacter sph... [more]

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Properties
Property NameValue
Genbank descriptionC31004A09EF AbioticL1 Citrus clementina cDNA clone C31004A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868726 ID=FC868726; Name=FC868726; organism=Citrus clementina; type=EST; length=736bp
AACACTGTCTGAAATGGCTCCGCTGCAAGCAACAACTAACTTCGTCCATC
TCAAGAACCCACATGCTCATTATCTCCCTCGGCTCCCCTGTCACAAATCT
ACTCTTTCACTAAAAAGATTCACTCCCATGGCTGCTCTCACTGCATCTCC
CACTGTTGGTCTCGCTGAAACATTCACCCGATTGAAGAAGCAAGGCAAAG
TGGCCCTTATTCCATACATCACTGCTGGTGATCCTGACCTTTCAACCACC
GCAGAAGCGTTGAAGTTGCTTGACTCTTGTGGATCAGACATAATTGAACT
GGGTGTTCCATATTCTGATCCTTTAGCAGATGGTCCAGTCATCCAGGCTG
CGGCTACACGATCTTTAGCAAGAGGAACCAACTTCAATGCAATTCTTTCT
ATGTTGAAGGAGGTGGTTCCTCAAATATCTTGTCCAATTGCTTTATTTAC
ATATTACAACCCAATTCTGAAGCGAGGAGTTGATAATTTCATGTCCACAG
TAAGAGACATTGGCATACGTGGGCTTGTGGTTCCAGATGTCCCTCTGGAG
GAGACTGAATCTTTACAGAAGGAAGCCATGAAAAATAAGATTGAGCTGGT
ACTTTTTACAACTCCCACCACTCCAACAGATCGAATGAAAGCCATTGTTG
AAGCATCAGAGGGATTTGTCTATCTTTGTAGCTCAATTGGAGTTACTGGA
GCTCGCGCTTCTATTAGTGGCCATGTTCAACTCTTT
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