FC868726

Overview
NameFC868726
Unique NameFC868726
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15462 contig Ccv1_Contig15462:54..789. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_CLOAB (Tryptophan synthase alpha chain OS=Clostridium acetobutylicum GN=trpA PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.837e-35
Identity = 71/188 (37.77%), Postives = 121/188 (64.36%), Query Frame = 2
Query:  173 FTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTGARASISGHVQLF 736
            F  LK + K A+IP++T+G PD+ TT + +  ++  G+D+IELG+PYSDP+ADGP+IQ +++ +L  G     I++M+KEV   +  PI    Y+  + K G++ F+   ++ G+ G+V+PD+PLEE E +++ A + +  ++    PT+  DR+  IV  ++GF+Y  S+ GVTG R  I+  V+ +
Sbjct:    9 FKELKYKNKKAMIPFVTSGYPDVETTKKIVIEMEKSGADLIELGIPYSDPVADGPIIQISSSGALNNGLKIKDIMNMVKEVRKNVKIPIVYMGYFGCVFKYGLEKFIKDSKESGVDGIVIPDLPLEERERVKEIADRYEFYIIPLVAPTS-EDRIGKIVNGAKGFIYCVSTNGVTGVRNIIANDVKAY 195          
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_BACNA (Tryptophan synthase alpha chain OS=Bacillus subtilis subsp. natto GN=trpA PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.837e-35
Identity = 79/177 (44.63%), Postives = 113/177 (63.84%), Query Frame = 2
Query:  209 IPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-ISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTGARASISGHVQLF 736
            IP+ITAGDP    + E  K L   G+  +ELGV YSDPLADGPVIQ A+ R+L +G N    + +  E+    ++ PI LFTYYNP+L+   + F + +++  I GL+VPD+PLEE+ SLQ+E   +++  +    PT+ + R+K I+E +EGFVY  SS+GVTG R   +  V  F
Sbjct:   14 IPFITAGDPVPEVSIELAKSLQKAGATALELGVAYSDPLADGPVIQRASKRALDQGMNIVKAIELGGEMKKNGVNIPIILFTYYNPVLQLNKEYFFALLQENHIDGLLVPDLPLEESNSLQEECKSHEVTYISLVAPTSES-RLKTIIEQAEGFVYCVSSLGVTGVRNEFNSSVYPF 189          
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_AZOVD (Tryptophan synthase alpha chain OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=trpA PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.134e-35
Identity = 78/191 (40.84%), Postives = 111/191 (58.12%), Query Frame = 2
Query:  161 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVP-QISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTGARASISGHVQ 730
            L   F  LK+  + AL+ ++TAGDPD  T+   LK L   G+D+IELG+P++DP+ADGP IQ A  R+L  G N    L M++       + P+ L  Y+NPI   GV+ F++  R+ G+ GL+V D+P E  E L   A    ++ +  TTPTT   R+  ++  S GFVY  S  GVTGA A+   HV+
Sbjct:    4 LQTRFAELKQADRAALVTFVTAGDPDYETSLAILKGLPEAGADVIELGMPFTDPMADGPAIQLANIRALGAGQNLVKTLRMVRAFREGDRTTPLVLMGYFNPIHYYGVERFIAEAREAGVDGLIVVDLPPEHNEDLCDPAQAAGLDFIRLTTPTTDDKRLPRVLAGSSGFVYYVSVAGVTGAHAASLEHVE 194          
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_PSEPG (Tryptophan synthase alpha chain OS=Pseudomonas putida (strain GB-1) GN=trpA PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.093e-35
Identity = 77/190 (40.53%), Postives = 113/190 (59.47%), Query Frame = 2
Query:  161 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTGARASISGHV 727
            L + F  LK +G+ AL+ ++TAGDP    + + LK L + G+D+IELG+P++DP+ADG  IQ A  R+L  G      L M++E  V   + PI L  YYNPI + GV+ F++  +  G+ GL++ D+P E    L   A    I+ +  TTPTT   R+  ++E S GFVY  S  GVTGA ++ + HV
Sbjct:    4 LEQRFAELKAEGRSALVTFVTAGDPGYDASLQILKGLPAAGADVIELGMPFTDPMADGVAIQLATLRALEAGQTLAKTLQMVREFRVDNQTTPIVLMGYYNPIHRFGVEPFVAEAKAAGVDGLIIVDLPPEHDAELATPAQAAGIDFIRLTTPTTDDARLPRVLERSSGFVYYVSVAGVTGAGSATTEHV 193          
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_BRAJA (Tryptophan synthase alpha chain OS=Bradyrhizobium japonicum GN=trpA PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.093e-35
Identity = 76/186 (40.86%), Postives = 110/186 (59.14%), Query Frame = 2
Query:  173 FTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISC-PIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTGARASISGHV 727
            F  L KQG+ A + ++ AGDPD +T+ E +K L   G+D+IE+G+P++DP+ADGP IQAA  R+L  G      L +++      +  PI L  YYNPI   GVD F+   +  G+ GL++ D+P EE + L   AMK  +  +   TPTT   R+ A++  + GFVY  S  G+TGA A+ S  V
Sbjct:    9 FAELAKQGRSAFVTFLMAGDPDPATSLEIIKALPKSGADVIEIGMPFTDPMADGPSIQAAGLRALKAGMTLKKTLELVRGFRKDDNATPIVLMGYYNPIYIYGVDKFLVDAKSAGVDGLIIVDLPPEEDDELCLPAMKAGLNFIRLATPTTDDKRLPAVLANTSGFVYYVSITGITGAAAADSSAV 194          
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_NITWN (Tryptophan synthase alpha chain OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=trpA PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.346e-35
Identity = 76/190 (40.00%), Postives = 110/190 (57.89%), Query Frame = 2
Query:  152 TVGLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTGARASIS 718
            T  +   F  L+KQG+ A + ++ AGDPD +T+   +K L   G+DIIE+G+P++DP+ADGP +QAA  R+L  G      L M+ E      S P+ L  YYNP+   GV+ F+   R  G+ GL+V D+P EE   L   AMK  +  +   TPTT   R+ A++  + GFVY  S  G+TG+ A+ S
Sbjct:    2 TTRIDTRFAELRKQGRSAFVTFLMAGDPDPATSLAIIKALPRAGADIIEIGMPFTDPMADGPAVQAAGRRALDAGMTLTGTLRMIGEFRKDDDSTPVVLMGYYNPVYIYGVEKFLDDARAAGVDGLIVVDLPPEEDSELCIPAMKAGLNFIRLATPTTDDKRLPAVLANTSGFVYYVSITGITGSAAADS 191          
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_METM5 (Tryptophan synthase alpha chain OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=trpA PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.346e-35
Identity = 70/170 (41.18%), Postives = 108/170 (63.53%), Query Frame = 2
Query:  197 KVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTGAR 706
            K  L+ ++ +GDP+   T + +K LD   S +IELG+P+SDP+ADGP IQAA  R+L+ G        +LKE   +   P+ L TYYNP+ KRG++NF+ + ++ G +GL++ D+PL+E    ++   K+++  V    P TP +R+K   EAS  F+YL S+ G+TGAR
Sbjct:    3 KPVLVSFLVSGDPNPDATLKFMKTLDKY-SGVIELGIPFSDPVADGPTIQAADVRALSNGFKIAKSFEVLKEFRKESDTPVILMTYYNPVFKRGIENFVISAKEAGAKGLIIVDLPLQEATEYREICKKHEMGTVFLAAPNTPEERLKISDEASTEFLYLISTFGITGAR 171          
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_RHOP5 (Tryptophan synthase alpha chain OS=Rhodopseudomonas palustris (strain BisA53) GN=trpA PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.982e-35
Identity = 75/188 (39.89%), Postives = 111/188 (59.04%), Query Frame = 2
Query:  152 TVGLAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTGARAS 712
            T  L   F  LKKQG+ A + ++ AGDPDL T+ + L+ L   G+DIIE+G+P++DP+ADGP IQAA  R+L  GT     L +++       + P+ L  YYNPI   GV+ F+   +  G+ GL++ D+P EE   L   A+K  +  +   TPTT   R+ A++  + GFVY  S  G+TGA ++
Sbjct:    2 TTRLDSRFADLKKQGRAAFVTFLMAGDPDLDTSLKLLQALPKAGADIIEIGMPFTDPMADGPAIQAAGLRALKAGTTLQKTLELVRAFRKADDATPLVLMGYYNPIYIYGVEPFLIDAKAAGVDGLIIVDLPPEEDAELCLPAIKAGLNFIRLATPTTDDKRLPAVLANTSGFVYYVSVTGITGAASA 189          
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_BACHD (Tryptophan synthase alpha chain OS=Bacillus halodurans GN=trpA PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.982e-35
Identity = 76/181 (41.99%), Postives = 111/181 (61.33%), Query Frame = 2
Query:  197 KVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQ-ISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTGARASISGHVQLF 736
            K   IP+ITAGDP+   T E    L+  G+DI+ELG+PYSDPLADGPVIQAA+ R+L         LS++ ++  Q ++ P+ +FTY NP+L+ G + F+    D  + G++VPD+P EE E LQ    ++ + L+    PT+   R++ I   ++GFVY  SS+GVTG R  +   V  F
Sbjct:   12 KNLFIPFITAGDPNPEVTIELALTLEEAGADILELGIPYSDPLADGPVIQAASKRALKHEMTLEKALSLVPKMRAQGLTIPVIVFTYVNPLLQYGEEQFVKRAADYQVDGILVPDMPFEEGEVLQAACQEHNLSLISLVAPTS-NKRIEKIAARAQGFVYCVSSLGVTGLRDELDPRVHEF 191          
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_PSEFS (Tryptophan synthase alpha chain OS=Pseudomonas fluorescens (strain SBW25) GN=trpA PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.191e-34
Identity = 78/191 (40.84%), Postives = 111/191 (58.12%), Query Frame = 2
Query:  161 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTGARASISGHVQ 730
            L   F +LK+Q + AL+ ++TAGDP   T+   LK L + G+D+IELG+P++DP+ADGP IQ A  R+L    N    L M++E        P+ L  Y+NPI K GV  F++  ++ G+ GL+V D+P E    L   A    I+ +  TTPTT   R+  ++  S GFVY  S  GVTGA A+   HV+
Sbjct:    4 LQTRFAQLKEQNRAALVTFVTAGDPGYDTSLAILKGLPAAGADVIELGMPFTDPMADGPAIQLANIRALEAKQNLVKTLQMVREFRKDNNDTPLVLMGYFNPIHKYGVPKFIADAKEAGVDGLIVVDMPPEHNGELCDPAQAAGIDFIRLTTPTTDDVRLPTVLNGSSGFVYYVSVAGVTGAGAATLEHVE 194          
The following BLAST results are available for this feature:
BLAST of FC868726 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TRPA_CLOAB1.837e-3537.77Tryptophan synthase alpha chain OS=Clostridium ace... [more]
TRPA_BACNA1.837e-3544.63Tryptophan synthase alpha chain OS=Bacillus subtil... [more]
TRPA_AZOVD3.134e-3540.84Tryptophan synthase alpha chain OS=Azotobacter vin... [more]
TRPA_PSEPG4.093e-3540.53Tryptophan synthase alpha chain OS=Pseudomonas put... [more]
TRPA_BRAJA4.093e-3540.86Tryptophan synthase alpha chain OS=Bradyrhizobium ... [more]
TRPA_NITWN5.346e-3540.00Tryptophan synthase alpha chain OS=Nitrobacter win... [more]
TRPA_METM55.346e-3541.18Tryptophan synthase alpha chain OS=Methanococcus m... [more]
TRPA_RHOP56.982e-3539.89Tryptophan synthase alpha chain OS=Rhodopseudomona... [more]
TRPA_BACHD6.982e-3541.99Tryptophan synthase alpha chain OS=Bacillus halodu... [more]
TRPA_PSEFS1.191e-3440.84Tryptophan synthase alpha chain OS=Pseudomonas flu... [more]

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Properties
Property NameValue
Genbank descriptionC31004A09EF AbioticL1 Citrus clementina cDNA clone C31004A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868726 ID=FC868726; Name=FC868726; organism=Citrus clementina; type=EST; length=736bp
AACACTGTCTGAAATGGCTCCGCTGCAAGCAACAACTAACTTCGTCCATC
TCAAGAACCCACATGCTCATTATCTCCCTCGGCTCCCCTGTCACAAATCT
ACTCTTTCACTAAAAAGATTCACTCCCATGGCTGCTCTCACTGCATCTCC
CACTGTTGGTCTCGCTGAAACATTCACCCGATTGAAGAAGCAAGGCAAAG
TGGCCCTTATTCCATACATCACTGCTGGTGATCCTGACCTTTCAACCACC
GCAGAAGCGTTGAAGTTGCTTGACTCTTGTGGATCAGACATAATTGAACT
GGGTGTTCCATATTCTGATCCTTTAGCAGATGGTCCAGTCATCCAGGCTG
CGGCTACACGATCTTTAGCAAGAGGAACCAACTTCAATGCAATTCTTTCT
ATGTTGAAGGAGGTGGTTCCTCAAATATCTTGTCCAATTGCTTTATTTAC
ATATTACAACCCAATTCTGAAGCGAGGAGTTGATAATTTCATGTCCACAG
TAAGAGACATTGGCATACGTGGGCTTGTGGTTCCAGATGTCCCTCTGGAG
GAGACTGAATCTTTACAGAAGGAAGCCATGAAAAATAAGATTGAGCTGGT
ACTTTTTACAACTCCCACCACTCCAACAGATCGAATGAAAGCCATTGTTG
AAGCATCAGAGGGATTTGTCTATCTTTGTAGCTCAATTGGAGTTACTGGA
GCTCGCGCTTCTATTAGTGGCCATGTTCAACTCTTT
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