FC868726

Overview
NameFC868726
Unique NameFC868726
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15462 contig Ccv1_Contig15462:54..789. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_BURPS (Tryptophan synthase alpha chain OS=Burkholderia pseudomallei GN=trpA PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.191e-34
Identity = 78/194 (40.21%), Postives = 114/194 (58.76%), Query Frame = 2 
Query:  161 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTGAR----ASISGHV 727
            +  TF  L  QG+  LIP+ITAGDPD + T E +  L   G+D+IELGVP+SDP+ADGPVIQ ++ R+LA+G   +++L  +K         P+ L  Y NPI + G D F +  RD G+ G++V D P EE+     +     I+ +    PT+  DR+ A+ + + G+VY  S  GVTGA     +SI+G +
Sbjct:    4 IQNTFAALAAQGRKGLIPFITAGDPDPAKTVELMHALAEGGADVIELGVPFSDPMADGPVIQRSSERALAKGVTLHSVLDDVKRFRARDQKTPVVLMGYANPIERMGADAFAAAARDAGVDGVLVVDYPPEESHDFAAKMRAAGIDPIFLLAPTSTDDRIAAVGQVASGYVYYVSLKGVTGAANLDVSSIAGKI 197
[Close]
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_BURP6 (Tryptophan synthase alpha chain OS=Burkholderia pseudomallei (strain 668) GN=trpA PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.191e-34
Identity = 78/194 (40.21%), Postives = 114/194 (58.76%), Query Frame = 2 
Query:  161 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTGAR----ASISGHV 727
            +  TF  L  QG+  LIP+ITAGDPD + T E +  L   G+D+IELGVP+SDP+ADGPVIQ ++ R+LA+G   +++L  +K         P+ L  Y NPI + G D F +  RD G+ G++V D P EE+     +     I+ +    PT+  DR+ A+ + + G+VY  S  GVTGA     +SI+G +
Sbjct:    4 IQNTFAALAAQGRKGLIPFITAGDPDPAKTVELMHALAEGGADVIELGVPFSDPMADGPVIQRSSERALAKGVTLHSVLDDVKRFRARDQKTPVVLMGYANPIERMGADAFAAAARDAGVDGVLVVDYPPEESHDFAAKMRAAGIDPIFLLAPTSTDDRIAAVGQVASGYVYYVSLKGVTGAANLDVSSIAGKI 197
[Close]
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_BURP0 (Tryptophan synthase alpha chain OS=Burkholderia pseudomallei (strain 1106a) GN=trpA PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.191e-34
Identity = 78/194 (40.21%), Postives = 114/194 (58.76%), Query Frame = 2 
Query:  161 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTGAR----ASISGHV 727
            +  TF  L  QG+  LIP+ITAGDPD + T E +  L   G+D+IELGVP+SDP+ADGPVIQ ++ R+LA+G   +++L  +K         P+ L  Y NPI + G D F +  RD G+ G++V D P EE+     +     I+ +    PT+  DR+ A+ + + G+VY  S  GVTGA     +SI+G +
Sbjct:    4 IQNTFAALAAQGRKGLIPFITAGDPDPAKTVELMHALAEGGADVIELGVPFSDPMADGPVIQRSSERALAKGVTLHSVLDDVKRFRARDQKTPVVLMGYANPIERMGADAFAAAARDAGVDGVLVVDYPPEESHDFAAKMRAAGIDPIFLLAPTSTDDRIAAVGQVASGYVYYVSLKGVTGAANLDVSSIAGKI 197
[Close]
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_BURMS (Tryptophan synthase alpha chain OS=Burkholderia mallei (strain SAVP1) GN=trpA PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.191e-34
Identity = 78/194 (40.21%), Postives = 114/194 (58.76%), Query Frame = 2 
Query:  161 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTGAR----ASISGHV 727
            +  TF  L  QG+  LIP+ITAGDPD + T E +  L   G+D+IELGVP+SDP+ADGPVIQ ++ R+LA+G   +++L  +K         P+ L  Y NPI + G D F +  RD G+ G++V D P EE+     +     I+ +    PT+  DR+ A+ + + G+VY  S  GVTGA     +SI+G +
Sbjct:    4 IQNTFAALAAQGRKGLIPFITAGDPDPAKTVELMHALAEGGADVIELGVPFSDPMADGPVIQRSSERALAKGVTLHSVLDDVKRFRARDQKTPVVLMGYANPIERMGADAFAAAARDAGVDGVLVVDYPPEESHDFAAKMRAAGIDPIFLLAPTSTDDRIAAVGQVASGYVYYVSLKGVTGAANLDVSSIAGKI 197
[Close]
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_BURMA (Tryptophan synthase alpha chain OS=Burkholderia mallei GN=trpA PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.191e-34
Identity = 78/194 (40.21%), Postives = 114/194 (58.76%), Query Frame = 2 
Query:  161 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTGAR----ASISGHV 727
            +  TF  L  QG+  LIP+ITAGDPD + T E +  L   G+D+IELGVP+SDP+ADGPVIQ ++ R+LA+G   +++L  +K         P+ L  Y NPI + G D F +  RD G+ G++V D P EE+     +     I+ +    PT+  DR+ A+ + + G+VY  S  GVTGA     +SI+G +
Sbjct:    4 IQNTFAALAAQGRKGLIPFITAGDPDPAKTVELMHALAEGGADVIELGVPFSDPMADGPVIQRSSERALAKGVTLHSVLDDVKRFRARDQKTPVVLMGYANPIERMGADAFAAAARDAGVDGVLVVDYPPEESHDFAAKMRAAGIDPIFLLAPTSTDDRIAAVGQVASGYVYYVSLKGVTGAANLDVSSIAGKI 197
[Close]
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_BURM9 (Tryptophan synthase alpha chain OS=Burkholderia mallei (strain NCTC 10229) GN=trpA PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.191e-34
Identity = 78/194 (40.21%), Postives = 114/194 (58.76%), Query Frame = 2 
Query:  161 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTGAR----ASISGHV 727
            +  TF  L  QG+  LIP+ITAGDPD + T E +  L   G+D+IELGVP+SDP+ADGPVIQ ++ R+LA+G   +++L  +K         P+ L  Y NPI + G D F +  RD G+ G++V D P EE+     +     I+ +    PT+  DR+ A+ + + G+VY  S  GVTGA     +SI+G +
Sbjct:    4 IQNTFAALAAQGRKGLIPFITAGDPDPAKTVELMHALAEGGADVIELGVPFSDPMADGPVIQRSSERALAKGVTLHSVLDDVKRFRARDQKTPVVLMGYANPIERMGADAFAAAARDAGVDGVLVVDYPPEESHDFAAKMRAAGIDPIFLLAPTSTDDRIAAVGQVASGYVYYVSLKGVTGAANLDVSSIAGKI 197
[Close]
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_BURM7 (Tryptophan synthase alpha chain OS=Burkholderia mallei (strain NCTC 10247) GN=trpA PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.191e-34
Identity = 78/194 (40.21%), Postives = 114/194 (58.76%), Query Frame = 2 
Query:  161 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEV-VPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTGAR----ASISGHV 727
            +  TF  L  QG+  LIP+ITAGDPD + T E +  L   G+D+IELGVP+SDP+ADGPVIQ ++ R+LA+G   +++L  +K         P+ L  Y NPI + G D F +  RD G+ G++V D P EE+     +     I+ +    PT+  DR+ A+ + + G+VY  S  GVTGA     +SI+G +
Sbjct:    4 IQNTFAALAAQGRKGLIPFITAGDPDPAKTVELMHALAEGGADVIELGVPFSDPMADGPVIQRSSERALAKGVTLHSVLDDVKRFRARDQKTPVVLMGYANPIERMGADAFAAAARDAGVDGVLVVDYPPEESHDFAAKMRAAGIDPIFLLAPTSTDDRIAAVGQVASGYVYYVSLKGVTGAANLDVSSIAGKI 197
[Close]
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_BACC3 (Tryptophan synthase alpha chain OS=Bacillus cereus (strain 03BB102) GN=trpA PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.191e-34
Identity = 70/183 (38.25%), Postives = 103/183 (56.28%), Query Frame = 2 
Query:  188 KQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTGARASISGHVQLF 736
            + GK A IPY+  GD  L    E ++ LD  G+ I+E+G+P+SDP+ADGP IQ A  R+L  G     I   L EV  ++  P  L TY NP+L  G + F+    + G+ G++VPD+P EE + +     +  I L+   T T+P +R+K I+  SEGFVY  +  GVTG R +    +  +
Sbjct:   11 ENGKKAFIPYVMGGDGGLEILKERIRFLDEAGASIVEIGIPFSDPVADGPTIQRAGKRALDSGVTVKGIFQALIEVRKEVQIPFVLMTYLNPVLAFGKERFIENCMEAGVDGIIVPDLPYEEQDIIAPLLREANIALIPLVTVTSPIERIKKIMSESEGFVYAVTVAGVTGVRQNFKDEIHSY 193
[Close]
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_BACAH (Tryptophan synthase alpha chain OS=Bacillus thuringiensis (strain Al Hakam) GN=trpA PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.191e-34
Identity = 70/183 (38.25%), Postives = 103/183 (56.28%), Query Frame = 2 
Query:  188 KQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTGARASISGHVQLF 736
            + GK A IPY+  GD  L    E ++ LD  G+ I+E+G+P+SDP+ADGP IQ A  R+L  G     I   L EV  ++  P  L TY NP+L  G + F+    + G+ G++VPD+P EE + +     +  I L+   T T+P +R+K I+  SEGFVY  +  GVTG R +    +  +
Sbjct:   11 ENGKKAFIPYVMGGDGGLEILKERIRFLDEAGASIVEIGIPFSDPVADGPTIQRAGKRALDSGVTVKGIFQALIEVRKEVQIPFVLMTYLNPVLAFGKERFIENCMEAGVDGIIVPDLPYEEQDIIAPLLREANIALIPLVTVTSPIERIKKIMSESEGFVYAVTVAGVTGVRQNFKDEIHSY 193
[Close]
BLAST of FC868726 vs. ExPASy Swiss-Prot
Match: TRPA_PSEF5 (Tryptophan synthase alpha chain OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=trpA PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.555e-34
Identity = 78/191 (40.84%), Postives = 112/191 (58.64%), Query Frame = 2 
Query:  161 LAETFTRLKKQGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQIS-CPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLCSSIGVTGARASISGHVQ 730
            L   F +LK+Q + AL+ ++TAGDP+  T+   LK L + G+D+IELG+P++DP+ADGP IQ A  R+L    N    L M++E     S  P+ L  Y+NPI   GV  F++  +  G+ GL+V D+P E    L   A    I+ +  TTPTT   R+  +++ S GFVY  S  GVTGA A+   HV+
Sbjct:    4 LQTRFAQLKEQNRAALVTFVTAGDPNYDTSLAILKGLPAAGADVIELGMPFTDPMADGPAIQLANIRALGAKQNLAKTLQMVREFREGNSDTPLVLMGYFNPIHHYGVPRFIADAKAAGVDGLIVVDMPPEHNSELCDPAQAAGIDFIRLTTPTTDDARLPKVLDGSSGFVYYVSVAGVTGAGAATLEHVE 194
The following BLAST results are available for this feature:
BLAST of FC868726 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TRPA_BURPS1.191e-3440.21Tryptophan synthase alpha chain OS=Burkholderia ps... [more]
TRPA_BURP61.191e-3440.21Tryptophan synthase alpha chain OS=Burkholderia ps... [more]
TRPA_BURP01.191e-3440.21Tryptophan synthase alpha chain OS=Burkholderia ps... [more]
TRPA_BURMS1.191e-3440.21Tryptophan synthase alpha chain OS=Burkholderia ma... [more]
TRPA_BURMA1.191e-3440.21Tryptophan synthase alpha chain OS=Burkholderia ma... [more]
TRPA_BURM91.191e-3440.21Tryptophan synthase alpha chain OS=Burkholderia ma... [more]
TRPA_BURM71.191e-3440.21Tryptophan synthase alpha chain OS=Burkholderia ma... [more]
TRPA_BACC31.191e-3438.25Tryptophan synthase alpha chain OS=Bacillus cereus... [more]
TRPA_BACAH1.191e-3438.25Tryptophan synthase alpha chain OS=Bacillus thurin... [more]
TRPA_PSEF51.555e-3440.84Tryptophan synthase alpha chain OS=Pseudomonas flu... [more]

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Properties
Property NameValue
Genbank descriptionC31004A09EF AbioticL1 Citrus clementina cDNA clone C31004A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868726 ID=FC868726; Name=FC868726; organism=Citrus clementina; type=EST; length=736bp
AACACTGTCTGAAATGGCTCCGCTGCAAGCAACAACTAACTTCGTCCATC
TCAAGAACCCACATGCTCATTATCTCCCTCGGCTCCCCTGTCACAAATCT
ACTCTTTCACTAAAAAGATTCACTCCCATGGCTGCTCTCACTGCATCTCC
CACTGTTGGTCTCGCTGAAACATTCACCCGATTGAAGAAGCAAGGCAAAG
TGGCCCTTATTCCATACATCACTGCTGGTGATCCTGACCTTTCAACCACC
GCAGAAGCGTTGAAGTTGCTTGACTCTTGTGGATCAGACATAATTGAACT
GGGTGTTCCATATTCTGATCCTTTAGCAGATGGTCCAGTCATCCAGGCTG
CGGCTACACGATCTTTAGCAAGAGGAACCAACTTCAATGCAATTCTTTCT
ATGTTGAAGGAGGTGGTTCCTCAAATATCTTGTCCAATTGCTTTATTTAC
ATATTACAACCCAATTCTGAAGCGAGGAGTTGATAATTTCATGTCCACAG
TAAGAGACATTGGCATACGTGGGCTTGTGGTTCCAGATGTCCCTCTGGAG
GAGACTGAATCTTTACAGAAGGAAGCCATGAAAAATAAGATTGAGCTGGT
ACTTTTTACAACTCCCACCACTCCAACAGATCGAATGAAAGCCATTGTTG
AAGCATCAGAGGGATTTGTCTATCTTTGTAGCTCAATTGGAGTTACTGGA
GCTCGCGCTTCTATTAGTGGCCATGTTCAACTCTTT
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