FC868727

Overview
NameFC868727
Unique NameFC868727
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length666
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC868727 vs. ExPASy Swiss-Prot
Match: SODM_STAHJ (Superoxide dismutase [Mn/Fe] OS=Staphylococcus haemolyticus (strain JCSC1435) GN=sodA PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 7.346e-14
Identity = 46/133 (34.59%), Postives = 61/133 (45.86%), Query Frame = 2 
Query:  182 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 574
            F+L   PY  +ALEPH+ K T+E H  KHH  YV  LN  + GT+L + KS+E++V  + S  +       NN     NH  FW                  I+  +GS              +FGSGWAWLV
Sbjct:    3 FELPNLPYATDALEPHIDKQTMEIHHDKHHNTYVTKLNSAVEGTDL-ESKSIEEIVANLDSVPEDIQTAVRNNGGGHLNHSLFWELLTPNSEEKGTVVDK--IKEQWGSLDEFKKEFADKAAARFGSGWAWLV 132
[Close]
BLAST of FC868727 vs. ExPASy Swiss-Prot
Match: SODM_STAES (Superoxide dismutase [Mn/Fe] OS=Staphylococcus epidermidis (strain ATCC 12228) GN=sodA PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.346e-14
Identity = 46/133 (34.59%), Postives = 60/133 (45.11%), Query Frame = 2 
Query:  182 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 574
            F+L   PY  +ALEPH+ K T+E H  KHH  YV  LN  + GT+L + KS+E++V  + S          NN     NH  FW                  I+  +GS              +FGSGWAWLV
Sbjct:    3 FELPNLPYAYDALEPHIDKQTMEIHHDKHHNTYVTKLNSAVEGTDL-EAKSIEEIVANLDSVPSNIQTAVRNNGGGHLNHSLFWELLSPNSEEKGEVVDK--IKEQWGSLDEFKKEFADKAAARFGSGWAWLV 132
[Close]
BLAST of FC868727 vs. ExPASy Swiss-Prot
Match: SODM_STAEQ (Superoxide dismutase [Mn/Fe] OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=sodA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.346e-14
Identity = 46/133 (34.59%), Postives = 60/133 (45.11%), Query Frame = 2 
Query:  182 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 574
            F+L   PY  +ALEPH+ K T+E H  KHH  YV  LN  + GT+L + KS+E++V  + S          NN     NH  FW                  I+  +GS              +FGSGWAWLV
Sbjct:    3 FELPNLPYAYDALEPHIDKQTMEIHHDKHHNTYVTKLNSAVEGTDL-EAKSIEEIVANLDSVPSNIQTAVRNNGGGHLNHSLFWELLSPNSEEKGEVVDK--IKEQWGSLDEFKKEFADKAAARFGSGWAWLV 132
[Close]
BLAST of FC868727 vs. ExPASy Swiss-Prot
Match: SODM_STACA (Superoxide dismutase [Mn/Fe] OS=Staphylococcus carnosus GN=sodA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.346e-14
Identity = 47/133 (35.34%), Postives = 62/133 (46.62%), Query Frame = 2 
Query:  182 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 574
            F+L   PY  +ALEP++ K+T+E H  KHH  YV  LN  I GT+L + KS+E++V  + S          NN     NH  FW                  I+ ++GS              QFGSGWAWLV
Sbjct:    3 FELPNLPYEFDALEPYIDKETMEIHHDKHHNTYVTKLNAAIEGTDL-ENKSIEEIVANLDSVPSDIQTAVRNNGGGHLNHSLFWQLLTPNSEEKGTVIDK--IKEEWGSLDKFKDEFAKKAAGQFGSGWAWLV 132
[Close]
BLAST of FC868727 vs. ExPASy Swiss-Prot
Match: SODM_BACSU (Superoxide dismutase [Mn] OS=Bacillus subtilis GN=sodA PE=1 SV=5)

HSP 1 Score: 76.6406 bits (187), Expect = 1.253e-13
Identity = 45/133 (33.83%), Postives = 58/133 (43.61%), Query Frame = 2 
Query:  182 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 574
            ++L   PY  +ALEPH+ K+T+  H  KHH  YV NLNK + G      KS+E++V  + S  +       NN     NH  FW                  I   FGS              +FGSGWAWLV
Sbjct:    3 YELPELPYAYDALEPHIDKETMTIHHTKHHNTYVTNLNKAVEGNTALANKSVEELVADLDSVPENIRTAVRNNGGGHANHKLFWTLLSPNGGGEPTGALAEEINSVFGSFDKFKEQFAAAAAGRFGSGWAWLV 135
[Close]
BLAST of FC868727 vs. ExPASy Swiss-Prot
Match: SODM1_STAAW (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain MW2) GN=sodA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.253e-13
Identity = 45/133 (33.83%), Postives = 60/133 (45.11%), Query Frame = 2 
Query:  182 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 574
            F+L   PY  +ALEPH  K+T+E H  +HH  YV  LN  + GT+L + KS+E++V  + S          NN     NH  FW                  I+  +GS              +FGSGWAWLV
Sbjct:    3 FELPKLPYAFDALEPHFDKETMEIHHDRHHNTYVTKLNAAVEGTDL-ESKSIEEIVANLDSVPANIQTAVRNNGGGHLNHSLFWELLSPNSEEKGTVVEK--IKEQWGSLEEFKKEFADKAAARFGSGWAWLV 132
[Close]
BLAST of FC868727 vs. ExPASy Swiss-Prot
Match: SODM1_STAAS (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain MSSA476) GN=sodA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.253e-13
Identity = 45/133 (33.83%), Postives = 60/133 (45.11%), Query Frame = 2 
Query:  182 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 574
            F+L   PY  +ALEPH  K+T+E H  +HH  YV  LN  + GT+L + KS+E++V  + S          NN     NH  FW                  I+  +GS              +FGSGWAWLV
Sbjct:    3 FELPKLPYAFDALEPHFDKETMEIHHDRHHNTYVTKLNAAVEGTDL-ESKSIEEIVANLDSVPANIQTAVRNNGGGHLNHSLFWELLSPNSEEKGTVVEK--IKEQWGSLEEFKKEFADKAAARFGSGWAWLV 132
[Close]
BLAST of FC868727 vs. ExPASy Swiss-Prot
Match: SODM1_STAAR (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain MRSA252) GN=sodA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.253e-13
Identity = 45/133 (33.83%), Postives = 60/133 (45.11%), Query Frame = 2 
Query:  182 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 574
            F+L   PY  +ALEPH  K+T+E H  +HH  YV  LN  + GT+L + KS+E++V  + S          NN     NH  FW                  I+  +GS              +FGSGWAWLV
Sbjct:    3 FELPKLPYAFDALEPHFDKETMEIHHDRHHNTYVTKLNAAVEGTDL-ESKSIEEIVANLDSVPANIQTAVRNNGGGHLNHSLFWELLSPNSEEKGTVVEK--IKEQWGSLEEFKKEFADKAAARFGSGWAWLV 132
[Close]
BLAST of FC868727 vs. ExPASy Swiss-Prot
Match: SODM1_STAAN (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain N315) GN=sodA PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.253e-13
Identity = 45/133 (33.83%), Postives = 60/133 (45.11%), Query Frame = 2 
Query:  182 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 574
            F+L   PY  +ALEPH  K+T+E H  +HH  YV  LN  + GT+L + KS+E++V  + S          NN     NH  FW                  I+  +GS              +FGSGWAWLV
Sbjct:    3 FELPKLPYAFDALEPHFDKETMEIHHDRHHNTYVTKLNAAVEGTDL-ESKSIEEIVANLDSVPANIQTAVRNNGGGHLNHSLFWELLSPNSEEKGTVVEK--IKEQWGSLEEFKKEFADKAAARFGSGWAWLV 132
[Close]
BLAST of FC868727 vs. ExPASy Swiss-Prot
Match: SODM1_STAAM (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=sodA PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.253e-13
Identity = 45/133 (33.83%), Postives = 60/133 (45.11%), Query Frame = 2 
Query:  182 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 574
            F+L   PY  +ALEPH  K+T+E H  +HH  YV  LN  + GT+L + KS+E++V  + S          NN     NH  FW                  I+  +GS              +FGSGWAWLV
Sbjct:    3 FELPKLPYAFDALEPHFDKETMEIHHDRHHNTYVTKLNAAVEGTDL-ESKSIEEIVANLDSVPANIQTAVRNNGGGHLNHSLFWELLSPNSEEKGTVVEK--IKEQWGSLEEFKKEFADKAAARFGSGWAWLV 132
The following BLAST results are available for this feature:
BLAST of FC868727 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 99
Match NameE-valueIdentityDescription
SODM_STAHJ7.346e-1434.59Superoxide dismutase [Mn/Fe] OS=Staphylococcus hae... [more]
SODM_STAES7.346e-1434.59Superoxide dismutase [Mn/Fe] OS=Staphylococcus epi... [more]
SODM_STAEQ7.346e-1434.59Superoxide dismutase [Mn/Fe] OS=Staphylococcus epi... [more]
SODM_STACA7.346e-1435.34Superoxide dismutase [Mn/Fe] OS=Staphylococcus car... [more]
SODM_BACSU1.253e-1333.83Superoxide dismutase [Mn] OS=Bacillus subtilis GN=... [more]
SODM1_STAAW1.253e-1333.83Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]
SODM1_STAAS1.253e-1333.83Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]
SODM1_STAAR1.253e-1333.83Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]
SODM1_STAAN1.253e-1333.83Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]
SODM1_STAAM1.253e-1333.83Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]

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Properties
Property NameValue
Genbank descriptionC31004A10EF AbioticL1 Citrus clementina cDNA clone C31004A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868727 ID=FC868727; Name=FC868727; organism=Citrus clementina; type=EST; length=666bp
CATCTGCTATAACCAAAGCTGTAATATATAAGGCATGGCATCGGCGCCAG
CAGCAGCTTCATCTGCTCCAACAATTTGGTTGACTGGCCAAGGACTTGGT
GGAAGGAGTACGCGATTGCCTTTTCATTGGAGAAACAAAAAGATGGAGCA
GAGAAAGACTGGTGGCCGAATTTCTGCGAAATTTGATTTGAAGCCTCCAC
CTTATCCACTGAATGCTCTGGAGCCACATATGAGCAAGGACACCCTGGAA
TTCCACTGGGGAAAGCACCACAGAGCTTATGTGGATAACCTCAACAAGCA
AATTGTTGGAACTGAGCTTGGTGATGGAAAGTCATTGGAAGATGTCGTTA
TTGCTTCTTACAACAAGGGTGACTTGCTTCCAGCTTTCAATAATGCTGCA
CAGGCGTGGAACCATGACTTCTTCTGGGAATCCATGAAACCGGGTGGTGG
CGGAAAGCCGTCTGGTGAACTTCTAGGACTGATTGAAAGGGATTTTGGTT
CTTTTGAAAAATTTCTTGAGGAATTCAAGGCGGCTGCAGCCACTCAGTTT
GGTTCTGGTTGGGCCTGGCTTGTATCAAAGCCAATAATAGAGCTGATGTG
GCTAATGCGGTGAATCCTCTTCCATCGGAGAAGGACAGAGCCTTTTAGTG
GTGAAGACTCCCATGC
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