FC868727

Overview
NameFC868727
Unique NameFC868727
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length666
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868727 vs. ExPASy Swiss-Prot
Match: SODM_CHLRE (Superoxide dismutase [Mn], mitochondrial OS=Chlamydomonas reinhardtii GN=SODA PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.264e-12
Identity = 48/142 (33.80%), Postives = 58/142 (40.85%), Query Frame = 2
Query:  188 LKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKG---DLLP------AFNNAAQAWNHDFFW-XXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVSKP 583
            L P PY   +LEPH+   T+  H  KHH+ YV+NLN       L     L+D+ +   NK    D LP        NN    +NH FFW                   IE  FGS              +FGSGWAWL  KP
Sbjct:    5 LPPLPYDYGSLEPHVDATTMNIHHTKHHQTYVNNLN-----AALDKFPELKDLGLVDLNKAVGTDKLPKDVATVIRNNGGGHYNHSFFWKVMTNPSNTNGPNGDVKAAIEASFGSVDEMKAKFNAAAAGRFGSGWAWLSVKP 141          
BLAST of FC868727 vs. ExPASy Swiss-Prot
Match: SODM_THET8 (Superoxide dismutase [Mn] OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=sodA PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.173e-11
Identity = 44/140 (31.43%), Postives = 56/140 (40.00%), Query Frame = 2
Query:  182 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVSKPIIEL 595
            F L    YP  ALEPH+   T+E H  KHH AYV NLN  +       G  +E ++  +A+  +       NN     NH  FW                  I+  FG               +FGSGWAWLV  P  +L
Sbjct:    5 FKLPDLGYPYEALEPHIDAKTMEIHHQKHHGAYVTNLNAALEKYPYLHGVEVEVLLRHLAALPQDIQTAVRNNGGGHLNHSLFWRLLTPGGAKEPVGELKKAIDEQFGGFQALKEKLTQAAMGRFGSGWAWLVKDPFGKL 144          
BLAST of FC868727 vs. ExPASy Swiss-Prot
Match: SODM_THET2 (Superoxide dismutase [Mn] OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=sodA PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.173e-11
Identity = 44/140 (31.43%), Postives = 56/140 (40.00%), Query Frame = 2
Query:  182 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVSKPIIEL 595
            F L    YP  ALEPH+   T+E H  KHH AYV NLN  +       G  +E ++  +A+  +       NN     NH  FW                  I+  FG               +FGSGWAWLV  P  +L
Sbjct:    5 FKLPDLGYPYEALEPHIDAKTMEIHHQKHHGAYVTNLNAALEKYPYLHGVEVEVLLRHLAALPQDIQTAVRNNGGGHLNHSLFWRLLTPGGAKEPVGELKKAIDEQFGGFQALKEKLTQAAMGRFGSGWAWLVKDPFGKL 144          
BLAST of FC868727 vs. ExPASy Swiss-Prot
Match: SODM_LISIN (Superoxide dismutase [Mn] OS=Listeria innocua GN=sodA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.173e-11
Identity = 41/133 (30.83%), Postives = 59/133 (44.36%), Query Frame = 2
Query:  182 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 574
            ++L   PY  +ALEP+  K+T+E H+ KHH  YV  LN+ + G      K +E++V  + S  +       N+     NH  FW                  IE +FG+              +FGSGWAWLV
Sbjct:    3 YELPKLPYTYDALEPNFDKETMELHYTKHHNTYVTKLNEAVSGHPELAEKPVEELVANLDSVPEDIRGAVRNHGGGHANHTLFWSILSPNGGGAPTGDLKSAIESEFGTFDDFKEKFNAAAAARFGSGWAWLV 135          
BLAST of FC868727 vs. ExPASy Swiss-Prot
Match: SODM2_STAAW (Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus aureus (strain MW2) GN=sodM PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.173e-11
Identity = 43/133 (32.33%), Postives = 60/133 (45.11%), Query Frame = 2
Query:  182 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 574
            F L   PY  +ALEP++ + T+EFH  KHH  YV  LN  + GTEL + +SL D++  +    +   +   NN    +NH  FW                  I+  +G+             T FGSGW WLV
Sbjct:    3 FKLPNLPYAYDALEPYIDQRTMEFHHDKHHNTYVTKLNATVEGTEL-EHQSLADMIANLDKVPEAMRMSVRNNGGGHFNHSLFWEILSPNSEEKGGVIDD--IKAQWGTLDEFKNEFANKATTLFGSGWTWLV 132          
BLAST of FC868727 vs. ExPASy Swiss-Prot
Match: SODM2_STAAS (Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus aureus (strain MSSA476) GN=sodM PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.173e-11
Identity = 43/133 (32.33%), Postives = 60/133 (45.11%), Query Frame = 2
Query:  182 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 574
            F L   PY  +ALEP++ + T+EFH  KHH  YV  LN  + GTEL + +SL D++  +    +   +   NN    +NH  FW                  I+  +G+             T FGSGW WLV
Sbjct:    3 FKLPNLPYAYDALEPYIDQRTMEFHHDKHHNTYVTKLNATVEGTEL-EHQSLADMIANLDKVPEAMRMSVRNNGGGHFNHSLFWEILSPNSEEKGGVIDD--IKAQWGTLDEFKNEFANKATTLFGSGWTWLV 132          
BLAST of FC868727 vs. ExPASy Swiss-Prot
Match: SODM2_STAAR (Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus aureus (strain MRSA252) GN=sodM PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.173e-11
Identity = 43/133 (32.33%), Postives = 60/133 (45.11%), Query Frame = 2
Query:  182 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 574
            F L   PY  +ALEP++ + T+EFH  KHH  YV  LN  + GTEL + +SL D++  +    +   +   NN    +NH  FW                  I+  +G+             T FGSGW WLV
Sbjct:    3 FKLPNLPYAYDALEPYIDQRTMEFHHDKHHNTYVTKLNATVEGTEL-EHQSLADMIANLDKVPEAMRMSVRNNGGGHFNHSLFWEILSPNSEEKGGVIDD--IKAQWGTLDEFKNEFANKATTLFGSGWTWLV 132          
BLAST of FC868727 vs. ExPASy Swiss-Prot
Match: SODM2_STAAN (Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus aureus (strain N315) GN=sodM PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.173e-11
Identity = 43/133 (32.33%), Postives = 60/133 (45.11%), Query Frame = 2
Query:  182 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 574
            F L   PY  +ALEP++ + T+EFH  KHH  YV  LN  + GTEL + +SL D++  +    +   +   NN    +NH  FW                  I+  +G+             T FGSGW WLV
Sbjct:    3 FKLPNLPYAYDALEPYIDQRTMEFHHDKHHNTYVTKLNATVEGTEL-EHQSLADMIANLDKVPEAMRMSVRNNGGGHFNHSLFWEILSPNSEEKGGVIDD--IKAQWGTLDEFKNEFANKATTLFGSGWTWLV 132          
BLAST of FC868727 vs. ExPASy Swiss-Prot
Match: SODM2_STAAM (Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=sodM PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.173e-11
Identity = 43/133 (32.33%), Postives = 60/133 (45.11%), Query Frame = 2
Query:  182 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 574
            F L   PY  +ALEP++ + T+EFH  KHH  YV  LN  + GTEL + +SL D++  +    +   +   NN    +NH  FW                  I+  +G+             T FGSGW WLV
Sbjct:    3 FKLPNLPYAYDALEPYIDQRTMEFHHDKHHNTYVTKLNATVEGTEL-EHQSLADMIANLDKVPEAMRMSVRNNGGGHFNHSLFWEILSPNSEEKGGVIDD--IKAQWGTLDEFKNEFANKATTLFGSGWTWLV 132          
BLAST of FC868727 vs. ExPASy Swiss-Prot
Match: SODM2_STAAC (Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus aureus (strain COL) GN=sodM PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.173e-11
Identity = 43/133 (32.33%), Postives = 60/133 (45.11%), Query Frame = 2
Query:  182 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 574
            F L   PY  +ALEP++ + T+EFH  KHH  YV  LN  + GTEL + +SL D++  +    +   +   NN    +NH  FW                  I+  +G+             T FGSGW WLV
Sbjct:    3 FKLPNLPYAYDALEPYIDQRTMEFHHDKHHNTYVTKLNATVEGTEL-EHQSLADMIANLDKVPEAMRMSVRNNGGGHFNHSLFWEILSPNSEEKGGVIDD--IKAQWGTLDEFKNEFANKATTLFGSGWTWLV 132          
The following BLAST results are available for this feature:
BLAST of FC868727 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 99
Match NameE-valueIdentityDescription
SODM_CHLRE5.264e-1233.80Superoxide dismutase [Mn], mitochondrial OS=Chlamy... [more]
SODM_THET81.173e-1131.43Superoxide dismutase [Mn] OS=Thermus thermophilus ... [more]
SODM_THET21.173e-1131.43Superoxide dismutase [Mn] OS=Thermus thermophilus ... [more]
SODM_LISIN1.173e-1130.83Superoxide dismutase [Mn] OS=Listeria innocua GN=s... [more]
SODM2_STAAW1.173e-1132.33Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus a... [more]
SODM2_STAAS1.173e-1132.33Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus a... [more]
SODM2_STAAR1.173e-1132.33Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus a... [more]
SODM2_STAAN1.173e-1132.33Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus a... [more]
SODM2_STAAM1.173e-1132.33Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus a... [more]
SODM2_STAAC1.173e-1132.33Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus a... [more]

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Properties
Property NameValue
Genbank descriptionC31004A10EF AbioticL1 Citrus clementina cDNA clone C31004A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868727 ID=FC868727; Name=FC868727; organism=Citrus clementina; type=EST; length=666bp
CATCTGCTATAACCAAAGCTGTAATATATAAGGCATGGCATCGGCGCCAG
CAGCAGCTTCATCTGCTCCAACAATTTGGTTGACTGGCCAAGGACTTGGT
GGAAGGAGTACGCGATTGCCTTTTCATTGGAGAAACAAAAAGATGGAGCA
GAGAAAGACTGGTGGCCGAATTTCTGCGAAATTTGATTTGAAGCCTCCAC
CTTATCCACTGAATGCTCTGGAGCCACATATGAGCAAGGACACCCTGGAA
TTCCACTGGGGAAAGCACCACAGAGCTTATGTGGATAACCTCAACAAGCA
AATTGTTGGAACTGAGCTTGGTGATGGAAAGTCATTGGAAGATGTCGTTA
TTGCTTCTTACAACAAGGGTGACTTGCTTCCAGCTTTCAATAATGCTGCA
CAGGCGTGGAACCATGACTTCTTCTGGGAATCCATGAAACCGGGTGGTGG
CGGAAAGCCGTCTGGTGAACTTCTAGGACTGATTGAAAGGGATTTTGGTT
CTTTTGAAAAATTTCTTGAGGAATTCAAGGCGGCTGCAGCCACTCAGTTT
GGTTCTGGTTGGGCCTGGCTTGTATCAAAGCCAATAATAGAGCTGATGTG
GCTAATGCGGTGAATCCTCTTCCATCGGAGAAGGACAGAGCCTTTTAGTG
GTGAAGACTCCCATGC
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