FC868728

Overview
NameFC868728
Unique NameFC868728
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length767
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10822 contig Ccv1_Contig10822:101..867. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868728 vs. ExPASy Swiss-Prot
Match: PROSC_CAEEL (Proline synthetase co-transcribed bacterial homolog protein OS=Caenorhabditis elegans GN=F09E5.8 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.046e-32
Identity = 92/220 (41.82%), Postives = 125/220 (56.82%), Query Frame = 3
Query:  117 LRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPD---DLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRK--PLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMPDYT-STPEN--FXTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGST 752
            L ++I+ V  A   +S+   R R+VAVSKTK   +I   Y    R FGENYVQE+ EK+  L     D+ WHFIG +QSNK+  +    P L  VE+V+ EK A   ++     G    PL+VLVQVNTSGE++K G+E     +L + + + C NL+F G MTIG  D + ++ EN  F  L K R    +  G   +  +LSMGMS DF  AI  G+T
Sbjct:   10 LFNIIEAVADAVT-ASQATKRCRLVAVSKTKSADLIEACYSQNQRHFGENYVQELEEKSDVLASKCLDIRWHFIGQVQSNKIGKI-CNSPGLWCVETVETEKHARIFDKEWSKHGANLSPLRVLVQVNTSGEDNKGGIEIGEAPKLAEFIRKECQNLKFDGFMTIGSFDNSHASGENPDFEKLFKVRQTWAEQTGESADSVELSMGMSDDFLQAIHQGAT 227          
BLAST of FC868728 vs. ExPASy Swiss-Prot
Match: Y274_AQUAE (UPF0001 protein aq_274 OS=Aquifex aeolicus GN=aq_274 PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.673e-32
Identity = 87/218 (39.91%), Postives = 126/218 (57.80%), Query Frame = 3
Query:  117 LRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPD-DLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMPDYTSTPEN----FXTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTM 755
            L  V++R+ +A ER+ R  +  +++  SKT P  VIR+ Y  G + +GEN VQE ++K   L D DLEWHFIG LQ+NKVK L+  V    ++ S+D + +A  + +           VL++VN  GEE+K GVEP    EL ++  +  PN++  GLMTI  P Y   PE+    F  L + R E+ +   +      LSMGMS DFE+AIE G+T+
Sbjct:    7 LSRVLERIQKACERAGRGENCAKLLGASKTVPPEVIREFYNCGLKVYGENRVQEFLKKYEALKDLDLEWHFIGRLQTNKVKYLMGKV---VLIHSLDRKNLADEIQKRA-FKNNIVQDVLIEVNVGGEETKGGVEPENLKELFEYTLE-LPNVKVLGLMTI--PPYLENPEDVRPYFRKLRELRDELQREYNVALPH--LSMGMSHDFEVAIEEGATI 215          
BLAST of FC868728 vs. ExPASy Swiss-Prot
Match: Y394_PSEAE (UPF0001 protein PA0394 OS=Pseudomonas aeruginosa GN=PA0394 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 8.598e-31
Identity = 90/214 (42.06%), Postives = 118/214 (55.14%), Query Frame = 3
Query:  117 LRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPD-DLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMPDYTSTPENFXTLAKCRSEVCKA-LGIPEEQCDLSMGMSGDFELAIEMGST 752
            +  V  R+ +AA+ + R P  + ++AVSKTKP + +R+ + AG R FGENY+QE + K A+L D  L WHFIG +QSNK +P+     +   V SVD  KIA RL+      G  PL V +QVN SGE SKSG  P     L + V Q  PNL   GLM I  P      ++    A+ R  +    LG+      LSMGMS D E AI  G+T
Sbjct:    8 IAKVAARIREAAQAAGRDPATVGLLAVSKTKPAAAVREAHAAGLRDFGENYLQEALGKQAELADLPLNWHFIGPIQSNKTRPI---AEHFQWVHSVDRLKIAQRLSEQ-RPAGLPPLNVCLQVNVSGEASKSGCAPEDLPALAEAVKQ-LPNLRLRGLMAIPEPTAERAAQH-AAFARLRELLLDLNLGLD----TLSMGMSDDLEAAIGEGAT 211          
BLAST of FC868728 vs. ExPASy Swiss-Prot
Match: YBD6_YEAST (UPF0001 protein YBL036C OS=Saccharomyces cerevisiae GN=YBL036C PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 9.506e-30
Identity = 86/199 (43.22%), Postives = 119/199 (59.80%), Query Frame = 3
Query:  177 RIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPDDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLN--RMVETMGRKPLKVLVQVNTSGEESKSGV-EPSGCLELVK-HVSQNCPNLEFCGLMTIGM--PDYTSTPEN--FXTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGS 749
            +I ++ VSK KP S I+ +Y+ G R FGENYVQE++EKA  LPDD++WHFIG LQ+NK K  LA VPNL  VE++D+ K A +LN  R        P+   VQ+NTS E+ KSG+   +   E++   +S+ C  ++  GLMTIG     +  + EN  F TL + + ++    G       LSMGMS DF  AI  G+
Sbjct:   41 KILLLVVSKLKPASDIQILYDHGVREFGENYVQELIEKAKLLPDDIKWHFIGGLQTNKCKD-LAKVPNLYSVETIDSLKKAKKLNESRAKFQPDCNPILCNVQINTSHEDQKSGLNNEAEIFEVIDFFLSEECKYIKLNGLMTIGSWNVSHEDSKENRDFATLVEWKKKIDAKFG---TSLKLSMGMSADFREAIRQGT 235          
BLAST of FC868728 vs. ExPASy Swiss-Prot
Match: Y395_HELPY (UPF0001 protein HP_0395 OS=Helicobacter pylori GN=HP_0395 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.416e-27
Identity = 82/214 (38.32%), Postives = 118/214 (55.14%), Query Frame = 3
Query:  123 SVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPD-DLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIG--MPDYTSTPENFXTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTM 755
            ++I ++ +A    SR    ++IVAVSK      I+  Y    R FGEN VQ++  K   L    LEWH IG+LQ NK+  LL+  P  A++ S+D+ K+A ++ +  E +G   L  L+QVN++ EESKSGV P   LE+   +S+ C +L+  GLM IG    D     ++F T  K   ++  A         LSMGMS DFELAI  G+ +
Sbjct:   10 ALITKIEKARTAYSRH-HIVKIVAVSKNASPEAIQHYYNCSQRAFGENKVQDLKTKMHSLEHLPLEWHMIGSLQENKINALLSLKP--ALLHSLDSLKLALKIEKRCEILGVN-LNALLQVNSAYEESKSGVVPEEALEIYSQISETCKHLKLKGLMCIGAHTDDEKEIEKSFITTKKLFDQIKNA-------SVLSMGMSDDFELAIACGANL 212          
BLAST of FC868728 vs. ExPASy Swiss-Prot
Match: Y395_HELPJ (UPF0001 protein jhp_0986 OS=Helicobacter pylori J99 GN=jhp_0986 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.767e-27
Identity = 79/195 (40.51%), Postives = 108/195 (55.38%), Query Frame = 3
Query:  180 IRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPD-DLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIG--MPDYTSTPENFXTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTM 755
            ++IVAVSK      I+  Y    R FGEN VQ++  K   L    LEWH IG+LQ NK+  LL+  P  A++ S+D+ K+A ++ +  E +G   L  L+QVN++ EESKSGV P   LE    +S+ C  L+  GLM IG    D T   ++F T  K   ++  A         LSMGMS DFELAI  G+ +
Sbjct:   28 VKIVAVSKNASPEAIQHYYNCSQRAFGENKVQDLKIKMHSLEHLPLEWHMIGSLQENKINALLSLKP--ALLHSLDSLKLALKIEKRCEILGVN-LNALLQVNSAYEESKSGVVPEEALETYSQISETCKRLKLKGLMCIGAHTDDETKIEKSFTTTKKLFDQIKNA-------SVLSMGMSDDFELAIACGANL 212          
BLAST of FC868728 vs. ExPASy Swiss-Prot
Match: YGGS_ECOLI (UPF0001 protein yggS OS=Escherichia coli (strain K12) GN=yggS PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.837e-27
Identity = 87/218 (39.91%), Postives = 114/218 (52.29%), Query Frame = 3
Query:  117 LRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPD----DLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMPDYTSTPENFXTLAKCRSEVCKALGIPEEQCD-LSMGMSGDFELAIEMGSTM 755
            L  V  ++  AA R  R P+ I ++AVSKTKP S I +  +AG R FGENYVQE V+K     +     LEWHFIG LQSNK + +     +     ++D  +IA RLN         PL VL+Q+N S E SKSG++ +   EL   V++  P L   GLM I  P+  S       +A+  +     L       D LS+GMS D E AI  GSTM
Sbjct:    8 LAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEGVDKIRHFQELGVTGLEWHFIGPLQSNKSRLV---AEHFDWCHTIDRLRIATRLNDQ-RPAELPPLNVLIQINISDENSKSGIQLAELDELAAAVAE-LPRLRLRGLMAIPAPE--SEYVRQFEVARQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTM 218          
BLAST of FC868728 vs. ExPASy Swiss-Prot
Match: YGGS_ECOL6 (UPF0001 protein yggS OS=Escherichia coli O6 GN=yggS PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.837e-27
Identity = 87/218 (39.91%), Postives = 114/218 (52.29%), Query Frame = 3
Query:  117 LRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPD----DLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMPDYTSTPENFXTLAKCRSEVCKALGIPEEQCD-LSMGMSGDFELAIEMGSTM 755
            L  V  ++  AA R  R P+ I ++AVSKTKP S I +  +AG R FGENYVQE V+K     +     LEWHFIG LQSNK + +     +     ++D  +IA RLN         PL VL+Q+N S E SKSG++ +   EL   V++  P L   GLM I  P+  S       +A+  +     L       D LS+GMS D E AI  GSTM
Sbjct:    8 LAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEGVDKIRHFQELGVTGLEWHFIGPLQSNKSRLV---AEHFDWCHTIDRLRIATRLNDQ-RPAELPPLNVLIQINISDENSKSGIQLAELDELAAAVAE-LPRLRLRGLMAIPAPE--SEYVRQFEVARQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTM 218          
BLAST of FC868728 vs. ExPASy Swiss-Prot
Match: YGGS_ECO57 (UPF0001 protein yggS OS=Escherichia coli O157:H7 GN=yggS PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.837e-27
Identity = 87/218 (39.91%), Postives = 114/218 (52.29%), Query Frame = 3
Query:  117 LRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPD----DLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMPDYTSTPENFXTLAKCRSEVCKALGIPEEQCD-LSMGMSGDFELAIEMGSTM 755
            L  V  ++  AA R  R P+ I ++AVSKTKP S I +  +AG R FGENYVQE V+K     +     LEWHFIG LQSNK + +     +     ++D  +IA RLN         PL VL+Q+N S E SKSG++ +   EL   V++  P L   GLM I  P+  S       +A+  +     L       D LS+GMS D E AI  GSTM
Sbjct:    8 LAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEGVDKIRHFQELGVTGLEWHFIGPLQSNKSRLV---AEHFDWCHTIDRLRIATRLNDQ-RPAELPPLNVLIQINISDENSKSGIQLAELDELAAAVAE-LPRLRLRGLMAIPAPE--SEYVRQFEVARQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTM 218          
BLAST of FC868728 vs. ExPASy Swiss-Prot
Match: YLME_BACSU (UPF0001 protein ylmE OS=Bacillus subtilis GN=ylmE PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.018e-23
Identity = 73/215 (33.95%), Postives = 116/215 (53.95%), Query Frame = 3
Query:  117 LRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPDDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIG--MPDYTSTPENFXTLAKCRSEVCKALGIPEEQC-DLSMGMSGDFELAIEMGST 752
            LR + +R+++A  RS R  D + ++AV+K       ++  +AG  C GEN   E++ K   +  + EWHFIG+LQS K K +   V +++ + S+D   +A    + +E      ++  VQVNTS E SK G++    +  ++ +S    ++   GLMT+     D       F +L + R +V K L  P   C +LSMGMS DFE+AIE G+T
Sbjct:    7 LRHINERINEACNRSGRSSDEVTVIAVTKYVSPERAQEAVDAGITCLGENRDAELLRKQELMKGNPEWHFIGSLQSRKAKSV---VNSVSYIHSLDRLSLA----KEIEKRAEGTVRCFVQVNTSLEPSKHGMKKEEVIPFIQELS-GFEHILVAGLMTMAPLTDDQDQIRSCFRSLRELRDQVQK-LNQPNAPCTELSMGMSNDFEIAIEEGAT 212          
The following BLAST results are available for this feature:
BLAST of FC868728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
PROSC_CAEEL2.046e-3241.82Proline synthetase co-transcribed bacterial homolo... [more]
Y274_AQUAE2.673e-3239.91UPF0001 protein aq_274 OS=Aquifex aeolicus GN=aq_2... [more]
Y394_PSEAE8.598e-3142.06UPF0001 protein PA0394 OS=Pseudomonas aeruginosa G... [more]
YBD6_YEAST9.506e-3043.22UPF0001 protein YBL036C OS=Saccharomyces cerevisia... [more]
Y395_HELPY4.416e-2738.32UPF0001 protein HP_0395 OS=Helicobacter pylori GN=... [more]
Y395_HELPJ5.767e-2740.51UPF0001 protein jhp_0986 OS=Helicobacter pylori J9... [more]
YGGS_ECOLI9.837e-2739.91UPF0001 protein yggS OS=Escherichia coli (strain K... [more]
YGGS_ECOL69.837e-2739.91UPF0001 protein yggS OS=Escherichia coli O6 GN=ygg... [more]
YGGS_ECO579.837e-2739.91UPF0001 protein yggS OS=Escherichia coli O157:H7 G... [more]
YLME_BACSU1.018e-2333.95UPF0001 protein ylmE OS=Bacillus subtilis GN=ylmE ... [more]

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Properties
Property NameValue
Genbank descriptionC31004B01EF AbioticL1 Citrus clementina cDNA clone C31004B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868728 ID=FC868728; Name=FC868728; organism=Citrus clementina; type=EST; length=767bp
GGAAGAATCAGGAACATGAAGAATCGCGCAAGAGGAGAGAGAATCATATC
AACGAACAAGTAGAAGCAGAAACCATGGCTGCGTCTGCCGCCACAGATGG
CGTTGCAGCGACGGCGCTTCGGTCCGTGATCCAACGGGTCCACCAAGCCG
CCGAGAGATCCAGTCGCCCGCCGGACCGGATTCGAATCGTCGCTGTCAGC
AAAACCAAACCGGTCTCAGTAATCCGTCAGGTTTATGAGGCCGGTCACCG
ATGTTTCGGTGAAAACTACGTTCAAGAAATAGTGGAAAAGGCGGCTCAGC
TTCCAGATGATCTAGAATGGCATTTCATTGGGAACCTGCAGAGCAATAAA
GTGAAACCTTTATTGGCTGGTGTGCCTAACCTGGCAATGGTAGAAAGTGT
GGACAACGAGAAGATTGCAGGTCGTCTTAATCGTATGGTTGAAACCATGG
GAAGGAAGCCTTTAAAAGTCTTGGTTCAAGTGAATACCAGTGGAGAAGAA
TCGAAATCTGGAGTTGAGCCTTCAGGGTGTCTGGAACTTGTGAAACATGT
TAGTCAAAACTGTCCGAATCTTGAGTTTTGTGGCCTAATGACGATTGGGA
TGCCAGATTACACATCGACCCCGGAGAACTTCNAGACATTAGCAAAATGC
AGAAGTGAGGTATGCAAGGCTCTTGGAATACCAGAAGAGCAATGTGATCT
GTCTATGGGAATGTCTGGTGACTTCGAGCTTGCTATTGAAATGGGGAGCA
CCATGTCAGGATTGGAT
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