FC868732
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC868732 vs. ExPASy Swiss-Prot
Match: RS4E_THEAC (30S ribosomal protein S4e OS=Thermoplasma acidophilum GN=rps4e PE=1 SV=2) HSP 1 Score: 88.5817 bits (218), Expect = 3.452e-17 Identity = 58/184 (31.52%), Postives = 86/184 (46.74%), Query Frame = 1 Query: 136 KRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVG 687 KRL + + + + P P+ G H + + L+ I+R+ LK + RE IL V VD K +K + GFMDV+ I E++R++Y+ +G L E A KL KVRS + T+DGRT D K D + + KI+E IK GN +T G + + G Sbjct: 6 KRLMVSRQVKIPRKTYFWGPTPNPGMHPKDQSVTLLSIIRDYLKLSDKEREAARILANGLVKVDGKTVREKKFAVGFMDVIEI--NGESYRVVYNDQGALVLMKETKERASMKLLKVRSKVIAPGNRIQLGTHDGRTFITDDKSKKVGDVWAVSVPDMKISEIIKMQPGNKAYITAGSHVNQTG 187
BLAST of FC868732 vs. ExPASy Swiss-Prot
Match: RS4E_HALMA (30S ribosomal protein S4E OS=Haloarcula marismortui GN=rps4e PE=1 SV=3) HSP 1 Score: 87.4261 bits (215), Expect = 7.690e-17 Identity = 53/190 (27.89%), Postives = 93/190 (48.95%), Query Frame = 1 Query: 121 LKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT-IRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVG 687 + H KRL+ P W +++ F K +GPH +PL+++LR+ L YA +E L + +VL++ K +D+ P G D+++ + E +R+ GR L +I + A+ KL K+ + G + +DG T I D A D+I + E ++ +++ G +V G + G VG Sbjct: 1 MSNHQKRLSVPNSWPVERKTATFTVKAGAGPH-GESGVPLLIVLRDVLGYADNRKEARYALNEDNVLINGKAISDEERPVGMFDILAFTEREEYYRVFPGEGGRLALTAIDPDAAQSKLGKIVTKTHVSGGDVQLGLHDGETLIVEDDQTYDAGDSIVVGNEDGEVVAHFEYEEGALVTAVDGAHAGEVG 189
BLAST of FC868732 vs. ExPASy Swiss-Prot
Match: RS4E_PICTO (30S ribosomal protein S4e OS=Picrophilus torridus GN=rps4e PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 2.474e-15 Identity = 56/197 (28.43%), Postives = 97/197 (49.24%), Query Frame = 1 Query: 94 LTNTKMARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRV 684 +T TK+ +K LK + W ++ L G+ HK +PL++ LR+ LK RE+ IL V+VD KV ++ GFMD +++ + ++ + YD KG+ + E KL +V+ + + G I+ +DG T+ IK D++ + + +I + +KF GN V +TGG + G + Sbjct: 2 ITKTKIMMAPRK-LKIARKSRFWAVNSLPGS---------HKKDSSIPLLIALRDYLKLGDKEREITRILTNSLVMVDGKVVKERRRGIGFMDTLTV--SGNDYLVSYDRKGKLVILPKPGETKGLKLLRVKGKTYVKGGRIQISFHDGSTMVTDRKDIKNGDSVLVKIPKKEIVDVLKFAPGNRVFITGGSHVGEI 186 The following BLAST results are available for this feature:
BLAST of FC868732 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 103
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Sequences
The
following sequences are available for this feature:
EST sequence >FC868732 ID=FC868732; Name=FC868732; organism=Citrus clementina; type=EST; length=692bpback to top |