FC868732

Overview
NameFC868732
Unique NameFC868732
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15251 contig Ccv1_Contig15251:3..694. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868732 vs. ExPASy Swiss-Prot
Match: RS4_CARGR (40S ribosomal protein S4 OS=Carabus granulatus GN=RpS4 PE=2 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 1.056e-74
Identity = 133/193 (68.91%), Postives = 158/193 (81.87%), Query Frame = 1
Query:  109 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVG 687
            MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RE LPL++ LRNRLKYALT  EV  I+MQR + VD KVRTD  YP+GFMDV++I KT E FRL+YD KGRF +H I  EEAK+KLCKV+ VQ G KGIP++ T+DGRTIRYPDP+IK NDTI+L++  +KI + IKFD GN+ M+TGGRN GRVG
Sbjct:    1 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRESLPLVIFLRNRLKYALTNSEVTKIVMQRLIKVDGKVRTDPNYPSGFMDVITIEKTGEFFRLIYDVKGRFTIHRITAEEAKYKLCKVKRVQTGPKGIPFLVTHDGRTIRYPDPIIKVNDTIQLEIANSKIMDSIKFDSGNLCMITGGRNLGRVG 193          
BLAST of FC868732 vs. ExPASy Swiss-Prot
Match: RS4_DICDI (40S ribosomal protein S4 OS=Dictyostelium discoideum GN=rps4 PE=1 SV=3)

HSP 1 Score: 278.1 bits (710), Expect = 3.072e-74
Identity = 136/193 (70.47%), Postives = 154/193 (79.79%), Query Frame = 1
Query:  109 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVG 687
            MARG KKHLKRL AP HWMLDKL G +AP+PSSGPHK RECLPLIL+LRNRLKYALT +EV  ILMQR V VD KVRTD  YPAGFMDV+SI KT ENFRLL+D KGRF L  I  EEAKFKL +V  V+ G +GIPY++T DGRTIRYPDP I  +DTIK+D+E+ KIT FI F+V N+ M+ GG N GRVG
Sbjct:    1 MARGPKKHLKRLAAPNHWMLDKLSGKWAPRPSSGPHKLRECLPLILVLRNRLKYALTKKEVTLILMQRLVKVDGKVRTDPNYPAGFMDVISIEKTKENFRLLFDPKGRFTLQRITPEEAKFKLARVTRVETGNQGIPYVHTDDGRTIRYPDPAISIHDTIKIDIESGKITAFIPFEVNNLCMIVGGHNLGRVG 193          
BLAST of FC868732 vs. ExPASy Swiss-Prot
Match: RS4_DROME (40S ribosomal protein S4 OS=Drosophila melanogaster GN=RpS4 PE=2 SV=2)

HSP 1 Score: 277.33 bits (708), Expect = 5.240e-74
Identity = 131/193 (67.88%), Postives = 158/193 (81.87%), Query Frame = 1
Query:  109 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVG 687
            MARG KKHLKRL APK WMLDKLGG FAP+PS+GPHK RE LPL++ LRNRLKYAL   EV  I+MQR V VD KVRTD TYPAG+MDV+++ KT E FRL+YD KGRF +H I  EEAK+KLCKV+  Q G KG+P++ T+DGRTIRYPDPLI AND++++D+ + KIT++IKFD GN+ M+TGGRN GRVG
Sbjct:    1 MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAEVTKIVMQRLVKVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFLVTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNLCMITGGRNLGRVG 193          
BLAST of FC868732 vs. ExPASy Swiss-Prot
Match: RS4Y2_HUMAN (40S ribosomal protein S4, Y isoform 2 OS=Homo sapiens GN=RPS4Y2 PE=1 SV=3)

HSP 1 Score: 274.633 bits (701), Expect = 3.396e-73
Identity = 133/194 (68.56%), Postives = 154/194 (79.38%), Query Frame = 1
Query:  109 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGI 690
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQ  + +D KVR D TYPAGF+DV+SI KT E+FRL+Y+TKG F +H I  EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDPLIK NDT+++DL T KIT FIKFD GNV MV  G N GRVG+
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQHFLKIDGKVRVDITYPAGFIDVISIEKTGEHFRLVYNTKGCFAVHRITVEEAKYKLCKVRKITVGTKGIPHLVTHDARTIRYPDPLIKVNDTVQIDLGTGKITSFIKFDTGNVCMVIAGANLGRVGV 194          
BLAST of FC868732 vs. ExPASy Swiss-Prot
Match: RS4_CANAL (40S ribosomal protein S4 OS=Candida albicans GN=RPS4 PE=3 SV=1)

HSP 1 Score: 273.092 bits (697), Expect = 9.882e-73
Identity = 131/194 (67.53%), Postives = 154/194 (79.38%), Query Frame = 1
Query:  109 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGI 690
            M RG KKHLKRL AP HWML KL G +AP+PS+GPH  RE LPL + LRNRL YAL  REV AI+MQ+HV V  KVRTD TYPAGFMDV+++  TNE+FRL YD KG+F +H I  EEA +KL KV+ VQ G+KG+PY+ T+DGRTIRYPDPLI+ANDT+K+DL T KI  FIKFD G +VMVTGGRN GRVG+
Sbjct:    1 MGRGPKKHLKRLAAPSHWMLXKLSGTYAPRPSAGPHXLRESLPLXVFLRNRLXYALCGREVKAIMMQQHVQVVGKVRTDTTYPAGFMDVITLEATNEHFRLAYDVKGKFAVHRISAEEAVYKLGKVKKVQLGKKGVPYVVTHDGRTIRYPDPLIRANDTVKIDLATGKIXSFIKFDTGRLVMVTGGRNLGRVGV 194          
BLAST of FC868732 vs. ExPASy Swiss-Prot
Match: RS4_HORSE (40S ribosomal protein S4 (Fragment) OS=Equus caballus GN=RPS4 PE=2 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 2.975e-69
Identity = 125/175 (71.43%), Postives = 144/175 (82.29%), Query Frame = 1
Query:  166 LDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGI 690
            LDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVRTD TYPAGFMDV+SI KT ENFRL+YDTKGRF +H I  EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDPLIK NDTI++DLET KIT+FIKFD GN+ MVTGG N GR+G+
Sbjct:    1 LDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGV 175          
BLAST of FC868732 vs. ExPASy Swiss-Prot
Match: RS4_CAEEL (40S ribosomal protein S4 OS=Caenorhabditis elegans GN=rps-4 PE=1 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 1.382e-66
Identity = 125/192 (65.10%), Postives = 145/192 (75.52%), Query Frame = 1
Query:  115 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGI 690
            RG KKHLKRL AP HWMLDKLGG FA +P+ GPHK RE LPL L LRNRLKYAL Y E   IL QR V VD KVRT   +P GFMDVV+I +TNE FR+LYDTKGR+ +H I+  EA FKLCKV+SV+   KG+P + T DGRTIRYPDP +K NDTI  ++ T KIT+ +KF+ GN+  VTGGRN GRVGI
Sbjct:    2 RGPKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAKKILTQRVVRVDGKVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFKLCKVKSVRTVNKGVPVLTTTDGRTIRYPDPHVKVNDTIVFNISTQKITDSVKFEPGNLAYVTGGRNVGRVGI 193          
BLAST of FC868732 vs. ExPASy Swiss-Prot
Match: RS4_TETTH (40S ribosomal protein S4 OS=Tetrahymena thermophila PE=1 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 5.820e-57
Identity = 114/195 (58.46%), Postives = 137/195 (70.26%), Query Frame = 1
Query:  112 ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQR--HVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGI 690
            ARG KKHLKR+NAPK WML+KLGG +A +PS GPHK RE LPL ++L+ RL YAL  R+V  IL  +  +V VD KVR DK YP G MDVV I KT+++FR+LYDTKGRF L S+  EEAK+KL KV +   G   IPYI T+D RTIR+P+P IK  DT+K DL  NKI  F   + GNV  +  G N GRVGI
Sbjct:    1 ARGPKKHLKRINAPKSWMLNKLGGIWATRPSQGPHKLRESLPLSVLLKERLNYALNGRDVTLILNDKEGNVFVDQKVRRDKGYPTGLMDVVRIEKTDQSFRILYDTKGRFVLKSLSKEEAKYKLLKVTAKAIGPNQIPYIVTHDSRTIRFPNPEIKIGDTLKYDLVNNKIENFAHLESGNVCYIQQGNNIGRVGI 195          
BLAST of FC868732 vs. ExPASy Swiss-Prot
Match: RS4_ENCCU (40S ribosomal protein S4 OS=Encephalitozoon cuniculi GN=RPS4 PE=1 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.644e-43
Identity = 89/194 (45.88%), Postives = 127/194 (65.46%), Query Frame = 1
Query:  109 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGI 690
            M  G + HLKR  APK WMLDK GG FA  P+SGPHK  EC+PL  ++   L+YA  ++E+  IL ++++ V+ +VRT+  +P G  DVVSI KT E+FR+LY+   +F LH I  EEA ++L KV + ++  +GIPYI +  G +IR+ DP I    TIK+  ET+K+ E+I      V+ V+ G+ RGRVG+
Sbjct:    1 MPTGHRDHLKRKTAPKSWMLDKQGGTFALMPASGPHKKTECIPLGYLISRFLRYASNFKELSIILAEKNIKVNGRVRTNSHFPVGLFDVVSIEKTGEHFRVLYNVHKKFHLHRISSEEASYRLTKV-TKKYENQGIPYIVSSCGLSIRFCDPAIDLGYTIKISNETSKVIEYIVPGPDKVIFVSRGKARGRVGV 193          
BLAST of FC868732 vs. ExPASy Swiss-Prot
Match: RS4E_METTH (30S ribosomal protein S4e OS=Methanobacterium thermoautotrophicum GN=rps4e PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.861e-33
Identity = 76/188 (40.43%), Postives = 109/188 (57.98%), Query Frame = 1
Query:  124 KKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVG 687
            +KHLKR  +P HW +      +  KPS GPH     LPL++I+R+ LK A   RE   I+    VLVD + R +  +P GFMDVVSIP+T + +R+L D +GR  LH I +E A FKLCK+ +    + G   +N +DGR     D   +  D +KL +   +I E I F+  ++ +VTGGR+ G +G
Sbjct:    7 RKHLKRFKSPVHWPIHPKEYKWTVKPSPGPHAIENSLPLMIIVRDILKVADNAREARKIINSGEVLVDGRPRKNYKFPVGFMDVVSIPRTGDVYRVLPDERGRLVLHPIDEENAGFKLCKIVNKTTIKGGRTQLNLHDGRNY-LSDDEFRVGDVVKLSIPEQEILERIPFEKDSLGLVTGGRHTGEIG 193          
The following BLAST results are available for this feature:
BLAST of FC868732 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
RS4_CARGR1.056e-7468.9140S ribosomal protein S4 OS=Carabus granulatus GN=... [more]
RS4_DICDI3.072e-7470.4740S ribosomal protein S4 OS=Dictyostelium discoide... [more]
RS4_DROME5.240e-7467.8840S ribosomal protein S4 OS=Drosophila melanogaste... [more]
RS4Y2_HUMAN3.396e-7368.5640S ribosomal protein S4, Y isoform 2 OS=Homo sapi... [more]
RS4_CANAL9.882e-7367.5340S ribosomal protein S4 OS=Candida albicans GN=RP... [more]
RS4_HORSE2.975e-6971.4340S ribosomal protein S4 (Fragment) OS=Equus cabal... [more]
RS4_CAEEL1.382e-6665.1040S ribosomal protein S4 OS=Caenorhabditis elegans... [more]
RS4_TETTH5.820e-5758.4640S ribosomal protein S4 OS=Tetrahymena thermophil... [more]
RS4_ENCCU1.644e-4345.8840S ribosomal protein S4 OS=Encephalitozoon cunicu... [more]
RS4E_METTH5.861e-3340.4330S ribosomal protein S4e OS=Methanobacterium ther... [more]

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Properties
Property NameValue
Genbank descriptionC31004B05EF AbioticL1 Citrus clementina cDNA clone C31004B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868732 ID=FC868732; Name=FC868732; organism=Citrus clementina; type=EST; length=692bp
GGGGAGTGGAGCTAGCAGCGCTTCTGAGTGCATTTTTCACTTCGTTTTTG
TTTTGCAGGACTGTGACACGCCGTTGGCGAATCCAAGCTCAGGCTCACGA
ACACAAAAATGGCGAGAGGTTTGAAGAAACATTTGAAGAGGCTTAATGCC
CCAAAGCACTGGATGCTTGACAAACTTGGTGGAGCATTTGCTCCCAAGCC
TTCATCTGGGCCACACAAATCAAGGGAGTGTTTGCCCTTAATTCTTATCT
TACGCAACCGCTTGAAGTATGCTCTTACATACCGAGAAGTCATTGCAATT
TTGATGCAACGACATGTGTTGGTTGATGCTAAGGTTCGCACAGATAAGAC
TTACCCTGCTGGGTTCATGGATGTTGTGTCAATTCCAAAGACGAATGAGA
ACTTCCGTCTCCTTTACGACACCAAGGGCCGGTTCCGCCTTCATTCAATC
AGGGATGAGGAGGCTAAGTTCAAGCTCTGCAAGGTTCGATCAGTGCAATT
TGGGCAGAAGGGAATCCCTTACATCAACACTTATGATGGGAGGACTATTC
GCTACCCAGACCCACTCATCAAGGCCAATGATACCATCAAGCTGGACCTG
GAGACTAACAAGATCACCGAGTTCATCAAGTTTGATGTTGGAAATGTTGT
GATGGTGACTGGAGGGAGAAACAGAGGACGTGTTGGAATCAT
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