FC868732

Overview
NameFC868732
Unique NameFC868732
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868732 vs. ExPASy Swiss-Prot
Match: RS4E_METST (30S ribosomal protein S4e OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps4e PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.463e-32
Identity = 76/190 (40.00%), Postives = 108/190 (56.84%), Query Frame = 1
Query:  118 GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVG 687
            G +KHLKR  APK W + K    +  K S+GPH   E +PL+++LR+ L  A   RE   IL    VLVD   R +  +P GFMDV+SIPK N+ FR+L D KGR  L  I ++++ FKL K+      + G   +N   GR I   D   K  D + L++   KI++ IKF+ G + ++TGG++   VG
Sbjct:    5 GSRKHLKRFKAPKMWPIHKKEEVWTTKTSAGPHALEESIPLVMVLRDILGLAANSREAKIILNNSDVLVDGIPRKNHRFPVGFMDVISIPKINKTFRVLQDYKGRLVLKEIEEKDSTFKLVKILGKTTIKGGKTQLNLEGGRNI-IADDDYKTGDVLLLNIPEQKISDSIKFEEGALGLITGGKHISEVG 193          
BLAST of FC868732 vs. ExPASy Swiss-Prot
Match: RS4E_METJA (30S ribosomal protein S4e OS=Methanocaldococcus jannaschii GN=rps4e PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.105e-31
Identity = 78/196 (39.80%), Postives = 111/196 (56.63%), Query Frame = 1
Query:  115 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--TIRYPDP------LIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRG 678
            +G K+HLKRL AP  W L +    F  +P  G H   E LPL+LI+R+ LKYA   RE   I+    VLVD +VR ++  P G MDVVS+P  NEN+R+L+D KGR +L     E    KLCK+++    + G   +N +DGR   I+  DP      + K  DT+ + +   +I   I F+VG +  +TGG++ G
Sbjct:    4 KGPKRHLKRLAAPVRWELPRKIHKFTVRPLPGAHPMSESLPLLLIVRDILKYADNAREAKKIIKMGKVLVDGRVRKEEKLPVGLMDVVSLPDANENYRVLFDRKGRIKLKP--TENPDVKLCKIKNKTVIKGGHIQLNLHDGRNIVIKVSDPTKAEEDVYKTGDTLLISIPEQEIKAHIPFEVGKLAYITGGKHVG 197          
BLAST of FC868732 vs. ExPASy Swiss-Prot
Match: RS4E_HYPBU (30S ribosomal protein S4e OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps4e PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.164e-31
Identity = 77/203 (37.93%), Postives = 114/203 (56.16%), Query Frame = 1
Query:  109 MAR-GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT--IRYPDPL-------IKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVG 687
            MAR G ++HLK L APK W + +  G F  KPS GPH     +PL++++R+ L YA T RE   ++ + H  +D +VR +  YP GFMDV+ I  T E +R+L      F LH I  EEA+FKL ++      + G   ++ +DGR   IR  DP         K   T+K+ +   ++  +   +VG++V++ GGRN GRVG
Sbjct:    1 MARMGGRRHLKTLAAPKFWPVRQRAGIFTVKPSPGPHPIERSIPLLILVRDVLGYAKTAREARKLIAEGHFKIDGRVRRNYKYPVGFMDVIEIVDTGEFYRVLPYPTRFFTLHPISKEEAQFKLGRIEDKSTVKGGHIQLHLHDGRNVLIRVSDPTNPVEAKPYKTLGTVKISIPEQQLLGYAPLEVGSLVIIFGGRNVGRVG 203          
BLAST of FC868732 vs. ExPASy Swiss-Prot
Match: RS4E_META3 (30S ribosomal protein S4e OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps4e PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.596e-30
Identity = 70/196 (35.71%), Postives = 107/196 (54.59%), Query Frame = 1
Query:  115 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--------TIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRG 678
            +G +KHLKRL APK+W + +    +  +PS+GPH     LPL+L+LR+ L YA   RE   ++    VLVD   R D  YP G MDV+S+P  NE+F ++ D KGR +L+ I+D     KLCK+ +    + G   +N +DGR          +  + + K  D + L +    I   ++F  G +  +TGG++ G
Sbjct:    4 KGPRKHLKRLPAPKNWQISRKTNKYTTRPSAGPHAMGSSLPLLLVLRDLLGYADNAREAKKVIKMGKVLVDGVKRKDHRYPTGLMDVISLPDANESFLVVLDEKGRIKLNKIKDNTK--KLCKIENKTVIKGGHIQLNLHDGRNQIVKLADATKAEEDIYKTGDCVILSIPEQSIVGHVQFGEGKLAYITGGKHVG 197          
BLAST of FC868732 vs. ExPASy Swiss-Prot
Match: RS4E_STAMF (30S ribosomal protein S4e OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps4e PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.644e-30
Identity = 78/202 (38.61%), Postives = 113/202 (55.94%), Query Frame = 1
Query:  109 MAR-GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT--IRYPDP------LIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVG 687
            MAR G KKHLK L APK W + +    +A KPS GPH    C PL++I+R+ L YA T RE   ++ + H  VD +VR +  YP G MDV+ I  T E +R++        L  I  EEAK+KL ++ +    + G   +N +DGR   I+  DP      + K   T+++ +   +I  +I  D G +V+++GGRN GRVG
Sbjct:    1 MARMGGKKHLKALVAPKFWPILRKEYKWAVKPSPGPHPIERCFPLLIIVRDILGYAKTAREARKLISEGHFKVDGRVRKNYKYPVGLMDVIEIVDTGETYRVIPVPVKVLGLIEIDKEEAKYKLSRIENKTTVKGGHIQLNLHDGRNVLIKVSDPKNPVEDIYKTLGTLQISIPEQQILNYIPLDEGTLVIISGGRNVGRVG 202          
BLAST of FC868732 vs. ExPASy Swiss-Prot
Match: RS4E_PYRKO (30S ribosomal protein S4e OS=Pyrococcus kodakaraensis GN=rps4e PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.065e-30
Identity = 74/195 (37.95%), Postives = 113/195 (57.95%), Query Frame = 1
Query:  115 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR----TIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVG 687
            +G K+HLKRL AP  W + +    +A +PS GPH  +  +PLI I+R+ L YA T RE   IL +  +LVD +VR D  +P G MDVVSIP+T E++R+L +  G+  LH I +EEAK K  ++ + +  +     +N +DG     ++   D   K + T+ + +   +I + + F+VG  V VT G+N  R G
Sbjct:    4 KGPKRHLKRLAAPTSWYIHRKAYKWAVRPSPGPHSMKTSIPLIYIVRDYLGYAKTAREARKILNEGKILVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEEEAKLKPFRINNKRMVKGAKVQLNLHDGSNHLVSLAEKD-AYKTSYTVIMQVPERQIVKVLPFEVGAYVFVTQGKNVARKG 197          
BLAST of FC868732 vs. ExPASy Swiss-Prot
Match: RS4E_PYRHO (30S ribosomal protein S4e OS=Pyrococcus horikoshii GN=rps4e PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.765e-29
Identity = 74/196 (37.76%), Postives = 112/196 (57.14%), Query Frame = 1
Query:  115 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND-----TIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVG 687
            +G K+HLKRL AP  W +++    +A +P  GPH  R  +PL+ I+R+ L YA T RE   IL +   LVD KVR D  +P G MDVVSIP+T E++R+L +  G+  LH I +EEA  K  ++R+ +  +     +N +DG    +  PL + ++     T+ + +   +I E + F+ G  V VT G+N  R G
Sbjct:    4 KGPKRHLKRLAAPSSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREARKILNEGKFLVDGKVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLVLHPISEEEANIKPLRIRNKRMVKGAKVQLNFHDG--TNHLIPLTEKDNYFTSYTVLMKVPEREIMEVLPFEKGAYVFVTQGKNVARKG 197          
BLAST of FC868732 vs. ExPASy Swiss-Prot
Match: RS4E_AERPE (30S ribosomal protein S4e OS=Aeropyrum pernix GN=rps4e PE=3 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 3.010e-29
Identity = 77/203 (37.93%), Postives = 112/203 (55.17%), Query Frame = 1
Query:  109 MAR-GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTI--RYPDP------LIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGI 690
            MAR G ++ LK L AP+ W + +    +A KP  GPH + + LPL+LI+RN L YA T RE   ++ + H  VD  VR D  +P GFMDV+ +  T E FR+L      F+LH I +EE   K  ++ +    + G   +N +DGR I  R  DP      + +  DT+ + +   +I   IKF  G + ++ GGRN GRVG+
Sbjct:    1 MARMGGQRRLKALAAPRFWPILRKEYKWAVKPRPGPHPAEKSLPLLLIVRNVLGYAQTAREARKLISEGHFRVDGVVRKDYKFPVGFMDVIEVVDTGEKFRMLPYPVKFFKLHPIPEEEGDLKPVRIENKTTVKGGHVQLNLHDGRNILVRVKDPRNPVEDVYRTMDTLLITVPGQEIKGHIKFGEGAIAIIVGGRNVGRVGV 203          
BLAST of FC868732 vs. ExPASy Swiss-Prot
Match: RS4E_KORCO (30S ribosomal protein S4e OS=Korarchaeum cryptofilum (strain OPF8) GN=rps4e PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.706e-29
Identity = 70/190 (36.84%), Postives = 107/190 (56.32%), Query Frame = 1
Query:  118 GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVG 687
            G  +HLK L AP ++ + K    +  KPS GPH   E +PL+LI+R+ LK A T RE   I+  + +LVD K R D  +  G MDV+SIP+   N+R++ D     RL  I   E+K KL KV   +  + G   + ++DGR        +K  D++ ++L +  + + ++FD G+ V+VT GR  GR+G
Sbjct:    5 GGSRHLKSLAAPGYYPIAKRERVWVVKPSPGPHAIDEGIPLLLIVRDMLKLATTAREARRIISMKKILVDGKPRYDYKFQVGLMDVISIPEIGVNYRMVPDPHRFLRLIEIPQSESKMKLVKVIGKRTIRGGRIQLTSHDGRNFLLDGRDVKPGDSLLIELPSQSVIDHLRFDTGSSVLVTRGRMAGRIG 194          
BLAST of FC868732 vs. ExPASy Swiss-Prot
Match: RS4E_PYRAB (30S ribosomal protein S4e OS=Pyrococcus abyssi GN=rps4e PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.758e-29
Identity = 73/196 (37.24%), Postives = 112/196 (57.14%), Query Frame = 1
Query:  115 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND-----TIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVG 687
            +G K+HLKRL AP  W +++    +A +P  GPH  R  +PL+ I+R+ L YA T RE   IL +   LVD +VR D  +P G MDVVSIP+T E++R+L +  G+  LH I +EEA  K  ++R+ +  +     +N +DG    +  PL + ++     T+ + +   +I E + F+ G  V VT G+N  R G
Sbjct:    4 KGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREARKILNEGKFLVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEEEANIKPLRIRNKRMVKGAKIQLNFHDG--TNHLIPLSEKDNYFTSYTVLMKVPEREILEVLPFEKGAYVFVTQGKNVARKG 197          
The following BLAST results are available for this feature:
BLAST of FC868732 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
RS4E_METST8.463e-3240.0030S ribosomal protein S4e OS=Methanosphaera stadtm... [more]
RS4E_METJA1.105e-3139.8030S ribosomal protein S4e OS=Methanocaldococcus ja... [more]
RS4E_HYPBU7.164e-3137.9330S ribosomal protein S4e OS=Hyperthermus butylicu... [more]
RS4E_META31.596e-3035.7130S ribosomal protein S4e OS=Methanococcus aeolicu... [more]
RS4E_STAMF4.644e-3038.6130S ribosomal protein S4e OS=Staphylothermus marin... [more]
RS4E_PYRKO6.065e-3037.9530S ribosomal protein S4e OS=Pyrococcus kodakaraen... [more]
RS4E_PYRHO1.765e-2937.7630S ribosomal protein S4e OS=Pyrococcus horikoshii... [more]
RS4E_AERPE3.010e-2937.9330S ribosomal protein S4e OS=Aeropyrum pernix GN=r... [more]
RS4E_KORCO6.706e-2936.8430S ribosomal protein S4e OS=Korarchaeum cryptofil... [more]
RS4E_PYRAB8.758e-2937.2430S ribosomal protein S4e OS=Pyrococcus abyssi GN=... [more]

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Properties
Property NameValue
Genbank descriptionC31004B05EF AbioticL1 Citrus clementina cDNA clone C31004B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868732 ID=FC868732; Name=FC868732; organism=Citrus clementina; type=EST; length=692bp
GGGGAGTGGAGCTAGCAGCGCTTCTGAGTGCATTTTTCACTTCGTTTTTG
TTTTGCAGGACTGTGACACGCCGTTGGCGAATCCAAGCTCAGGCTCACGA
ACACAAAAATGGCGAGAGGTTTGAAGAAACATTTGAAGAGGCTTAATGCC
CCAAAGCACTGGATGCTTGACAAACTTGGTGGAGCATTTGCTCCCAAGCC
TTCATCTGGGCCACACAAATCAAGGGAGTGTTTGCCCTTAATTCTTATCT
TACGCAACCGCTTGAAGTATGCTCTTACATACCGAGAAGTCATTGCAATT
TTGATGCAACGACATGTGTTGGTTGATGCTAAGGTTCGCACAGATAAGAC
TTACCCTGCTGGGTTCATGGATGTTGTGTCAATTCCAAAGACGAATGAGA
ACTTCCGTCTCCTTTACGACACCAAGGGCCGGTTCCGCCTTCATTCAATC
AGGGATGAGGAGGCTAAGTTCAAGCTCTGCAAGGTTCGATCAGTGCAATT
TGGGCAGAAGGGAATCCCTTACATCAACACTTATGATGGGAGGACTATTC
GCTACCCAGACCCACTCATCAAGGCCAATGATACCATCAAGCTGGACCTG
GAGACTAACAAGATCACCGAGTTCATCAAGTTTGATGTTGGAAATGTTGT
GATGGTGACTGGAGGGAGAAACAGAGGACGTGTTGGAATCAT
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