FC868732
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC868732 vs. ExPASy Swiss-Prot
Match: RS4E_SULAC (30S ribosomal protein S4e OS=Sulfolobus acidocaldarius GN=rps4e PE=3 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 1.497e-20 Identity = 65/194 (33.51%), Postives = 94/194 (48.45%), Query Frame = 1 Query: 130 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTI--------RYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVG 687 H+ R AP + K + + +GPHK +E +PL ++L+ LK T RE I+ VLVD KVR D YP G MDVV IP + R++ D +I E+AK+K ++ + + G+ +N DGR I +Y P + T+K++L KIT G M+ GGRN G G Sbjct: 3 HITRFEAPWFLKVGKKEYKWIIRSRAGPHKIQESVPLAILLKYYLKAVDTTREAKRIIFDGKVLVDGKVRRDYKYPVGLMDVVEIPSADLRVRIIPDNVRYLTTINISREDAKYKFVRIMNKTTLKSGVLQLNLEDGRNILLKGEELSQYNLPTL---TTLKIELPEQKITTAYTIKEGVYAMIIGGRNAGLHG 193
BLAST of FC868732 vs. ExPASy Swiss-Prot
Match: RS4E_METHJ (30S ribosomal protein S4e OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps4e PE=3 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 1.497e-20 Identity = 58/189 (30.69%), Postives = 100/189 (52.91%), Query Frame = 1 Query: 130 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDL---ETNKITEFIKFDVGNVVMVTGGRNRGRVG 687 HLKR+ +PK W + + F K S GPH ++ LP+++ R+++ +E +L +R ++V+ + G D+VSIPK+ +++R+L D KGR I ++ A +L K+ + + G +N DG + D K+ D+I L L + N+I + F GN+ M+ GG++ G VG Sbjct: 4 HLKRVVSPKSWGIPRKTDKFVTKTSPGPH-NKNALPIVVWARDQMGIVRNMKEAKHVLREREIIVNGRPVRHPDMGIGIFDIVSIPKSGKHYRILRDKKGRHVTIPIDEDAASSRLVKITNKTIVKGGRIQLNLRDGSNV-LTDKQYKSGDSIVLSLKEGQKNEIIDHFPFQPGNMAMIIGGKHSGVVG 190
BLAST of FC868732 vs. ExPASy Swiss-Prot
Match: RS4E_NANEQ (30S ribosomal protein S4e OS=Nanoarchaeum equitans GN=rps4e PE=3 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 1.956e-20 Identity = 66/192 (34.38%), Postives = 97/192 (50.52%), Query Frame = 1 Query: 121 LKKHLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCK-VRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGI 690 +K+HL+ L P+ W + K G + KPS GPH +P+ + LR+ L A REV +L VLVD + D +P G DV++IP+ NE +R+L D +G+ L I EEA K K +R V I Y T DGRT D K + + ++ KI E I + + G++ GR+G+ Sbjct: 5 IKRHLRSLAVPRTWPVPRKSRGYWIVKPSPGPHSKEFAMPIAVWLRDYLGLAENMREVRYLLNNGKVLVDGRPIKDYKFPVGLFDVLAIPEINEYYRVLLDERGKLYLKKIDKEEANIKYGKIIRKVSVRGGKIQYTLT-DGRTF-LGDNSYKTHYGVVYEIPNFKIREVIPLEKDRKAYIIRGKHTGRIGV 194
BLAST of FC868732 vs. ExPASy Swiss-Prot
Match: RS4_BIGNA (40S ribosomal protein S4 OS=Bigelowiella natans GN=RPS4 PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.401e-18 Identity = 53/194 (27.32%), Postives = 96/194 (49.48%), Query Frame = 1 Query: 109 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGI 690 MA+G+KKH KR+++ K G F K SSGPH + + L+ I++ A +E ++ + V+ K +P MD +S P N+++R+L G+ ++ I E K+CKV + I T D R ++ IK D++ + ++I +KF+VG++ ++T G++ G + + Sbjct: 1 MAKGIKKHQKRISSNTMIKYKKKLGIFNTKISSGPHSKVKSVSLLNIIKKFFHLADNNQEAQKVVKTGFLYVNGKKCLSHKFPISLMDTISFPLANKHYRVLLSKAGKLTVYEINQNEKDLKICKVIKIINASSKNKIIITDDLRELKINYAKIKVEDSLLIKTINDEIVYALKFEVGSLCLITRGKHLGTIAV 194
BLAST of FC868732 vs. ExPASy Swiss-Prot
Match: RS4E_METS5 (30S ribosomal protein S4e OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps4e PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 5.326e-18 Identity = 58/191 (30.37%), Postives = 91/191 (47.64%), Query Frame = 1 Query: 130 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDP-----LIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVG 687 H+ RL AP K + + S GPH + +PL L+LR+ L + + +E I+ VLVD +VR D YP G MDV++IP + R++ D + I +EE+KFKL ++ + + G+ N DGR + + T+K+ + +I F VM GG+N G +G Sbjct: 3 HITRLEAPWFLRASKKEYKWTVRASPGPHPLGKSIPLGLLLRDYLAFTSSLKESKKIISDGKVLVDGRVRRDYKYPVGLMDVIAIPHADLYLRIVPDRARLLKPVKISEEESKFKLVRLLNKTLVKGGLLQFNLEDGRNLLISKESTEMFKLPTLTTLKISIPNQEILGVYGFKENVYVMAVGGKNAGIIG 193
BLAST of FC868732 vs. ExPASy Swiss-Prot
Match: RS4E_HALSA (30S ribosomal protein S4e OS=Halobacterium salinarium GN=rps4e PE=3 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 6.955e-18 Identity = 53/189 (28.04%), Postives = 90/189 (47.62%), Query Frame = 1 Query: 121 LKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVG 687 + H KRL+ PK W +++ F K +GPH +PL+++LR+ L+Y E + VLV+ D P G D+++ P +E +R+ D GR L I + A KL KV G +N +DG + + D++ +D +TN+I +++ G +V G++ G +G Sbjct: 1 MTNHQKRLSVPKSWPVERKTETFTAKAGAGPH-GESGVPLVVVLRDVLEYVDDTSEAQYAINTDGVLVNGDSVGDVNRPIGMFDILAFPDRDEYYRVFPDEGGRLGLTEIDADAAGSKLNKVTDKTTVSGGRTQLNFHDGSNLALDEDAYAGGDSVVVDTDTNEIVAHFQYEEGALVTAVAGQHAGDIG 188
BLAST of FC868732 vs. ExPASy Swiss-Prot
Match: RS4E_HALS3 (30S ribosomal protein S4e OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rps4e PE=3 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 6.955e-18 Identity = 53/189 (28.04%), Postives = 90/189 (47.62%), Query Frame = 1 Query: 121 LKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVG 687 + H KRL+ PK W +++ F K +GPH +PL+++LR+ L+Y E + VLV+ D P G D+++ P +E +R+ D GR L I + A KL KV G +N +DG + + D++ +D +TN+I +++ G +V G++ G +G Sbjct: 1 MTNHQKRLSVPKSWPVERKTETFTAKAGAGPH-GESGVPLVVVLRDVLEYVDDTSEAQYAINTDGVLVNGDSVGDVNRPIGMFDILAFPDRDEYYRVFPDEGGRLGLTEIDADAAGSKLNKVTDKTTVSGGRTQLNFHDGSNLALDEDAYAGGDSVVVDTDTNEIVAHFQYEEGALVTAVAGQHAGDIG 188
BLAST of FC868732 vs. ExPASy Swiss-Prot
Match: RS4E_HALLT (30S ribosomal protein S4e OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rps4e PE=3 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 9.084e-18 Identity = 53/190 (27.89%), Postives = 93/190 (48.95%), Query Frame = 1 Query: 121 LKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRY-PDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVG 687 + +H KRL P W +++ F K +GPH +PL+++LR+ L Y + +E L VLV+ +D+ P G D+++ P+ E FR+ D GR L S+ +E A +L K+ + G + +DG + D D+I +D E+ + +++ G +V G++ GR+G Sbjct: 1 MTRHQKRLAVPNSWPVERKTNTFTVKAGAGPH-GEAGVPLVVLLRDVLGYVDSTKEARYALNNDSVLVNGDAISDEQRPIGMFDILAFPERGEFFRVFPDEGGRLALTSVDEEAAGSRLGKITNKSVVPGGDAQLTLHDGTNVLVDADTEYDTKDSIVVDNESKDVVAHFEYEEGALVTAVAGQHAGRIG 189
BLAST of FC868732 vs. ExPASy Swiss-Prot
Match: RS4E_THEVO (30S ribosomal protein S4e OS=Thermoplasma volcanium GN=rps4e PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.024e-17 Identity = 57/184 (30.98%), Postives = 89/184 (48.37%), Query Frame = 1 Query: 136 KRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVG 687 KRL P+ + + + P P G HK+ + L+ I+R+ L+ + RE IL V VD KV ++ + GFMDV+ I + E++R++Y+ +G L S + A K +V++ + +DGR + D I D + L KITE IK GN +TGG + G G Sbjct: 6 KRLMVPRTVKIPRKTYFWGPTPLPGRHKADHSVTLLTIIRDYLRLSDKEREATRILANGLVKVDGKVVKERKFGVGFMDVIEI--SGESYRVVYNNQGALVLVSESKDRANMKPLQVKNKVIAPGNKIQLGFHDGRVMVTEDRSISVGDVVIASLPDMKITEIIKMQPGNKAFITGGSHVGETG 187
BLAST of FC868732 vs. ExPASy Swiss-Prot
Match: RS4E_NATPD (30S ribosomal protein S4e OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps4e PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.024e-17 Identity = 53/190 (27.89%), Postives = 94/190 (49.47%), Query Frame = 1 Query: 121 LKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPD-PLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVG 687 + H KRL PK W +++ A+ K ++GPH E +PL+++LR+ L Y + +E L Q +L++ +D+ P G D+++ + E +R+ D GR L I ++ A KL K+ G ++ +DG T+ D ND+I + + +I ++ G +V G + GR+G Sbjct: 1 MTNHQKRLAVPKSWPVERKEEAYTTKAAAGPH-GEEGVPLLIVLRDVLGYVDSKKEARYALEQDSILINGTAVSDERRPVGMFDILAFDEREEYYRIFPDEGGRLSLTPIDEDAAGSKLGKIVGKTQVAGGDTQLSLHDGETLLVEDATAYDTNDSIVVSNDGEEIVAHFTYEEGALVTAVSGAHAGRIG 189 The following BLAST results are available for this feature:
BLAST of FC868732 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 103
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Sequences
The
following sequences are available for this feature:
EST sequence >FC868732 ID=FC868732; Name=FC868732; organism=Citrus clementina; type=EST; length=692bpback to top |