FC868732

Overview
NameFC868732
Unique NameFC868732
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15251 contig Ccv1_Contig15251:3..694. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868732 vs. ExPASy Swiss-Prot
Match: RS4E_SULAC (30S ribosomal protein S4e OS=Sulfolobus acidocaldarius GN=rps4e PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.497e-20
Identity = 65/194 (33.51%), Postives = 94/194 (48.45%), Query Frame = 1
Query:  130 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTI--------RYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVG 687
            H+ R  AP    + K    +  +  +GPHK +E +PL ++L+  LK   T RE   I+    VLVD KVR D  YP G MDVV IP  +   R++ D        +I  E+AK+K  ++ +    + G+  +N  DGR I        +Y  P +    T+K++L   KIT       G   M+ GGRN G  G
Sbjct:    3 HITRFEAPWFLKVGKKEYKWIIRSRAGPHKIQESVPLAILLKYYLKAVDTTREAKRIIFDGKVLVDGKVRRDYKYPVGLMDVVEIPSADLRVRIIPDNVRYLTTINISREDAKYKFVRIMNKTTLKSGVLQLNLEDGRNILLKGEELSQYNLPTL---TTLKIELPEQKITTAYTIKEGVYAMIIGGRNAGLHG 193          
BLAST of FC868732 vs. ExPASy Swiss-Prot
Match: RS4E_METHJ (30S ribosomal protein S4e OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps4e PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.497e-20
Identity = 58/189 (30.69%), Postives = 100/189 (52.91%), Query Frame = 1
Query:  130 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDL---ETNKITEFIKFDVGNVVMVTGGRNRGRVG 687
            HLKR+ +PK W + +    F  K S GPH ++  LP+++  R+++      +E   +L +R ++V+ +         G  D+VSIPK+ +++R+L D KGR     I ++ A  +L K+ +    + G   +N  DG  +   D   K+ D+I L L   + N+I +   F  GN+ M+ GG++ G VG
Sbjct:    4 HLKRVVSPKSWGIPRKTDKFVTKTSPGPH-NKNALPIVVWARDQMGIVRNMKEAKHVLREREIIVNGRPVRHPDMGIGIFDIVSIPKSGKHYRILRDKKGRHVTIPIDEDAASSRLVKITNKTIVKGGRIQLNLRDGSNV-LTDKQYKSGDSIVLSLKEGQKNEIIDHFPFQPGNMAMIIGGKHSGVVG 190          
BLAST of FC868732 vs. ExPASy Swiss-Prot
Match: RS4E_NANEQ (30S ribosomal protein S4e OS=Nanoarchaeum equitans GN=rps4e PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.956e-20
Identity = 66/192 (34.38%), Postives = 97/192 (50.52%), Query Frame = 1
Query:  121 LKKHLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCK-VRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGI 690
            +K+HL+ L  P+ W +  K  G +  KPS GPH     +P+ + LR+ L  A   REV  +L    VLVD +   D  +P G  DV++IP+ NE +R+L D +G+  L  I  EEA  K  K +R V      I Y  T DGRT    D   K +  +  ++   KI E I  +      +  G++ GR+G+
Sbjct:    5 IKRHLRSLAVPRTWPVPRKSRGYWIVKPSPGPHSKEFAMPIAVWLRDYLGLAENMREVRYLLNNGKVLVDGRPIKDYKFPVGLFDVLAIPEINEYYRVLLDERGKLYLKKIDKEEANIKYGKIIRKVSVRGGKIQYTLT-DGRTF-LGDNSYKTHYGVVYEIPNFKIREVIPLEKDRKAYIIRGKHTGRIGV 194          
BLAST of FC868732 vs. ExPASy Swiss-Prot
Match: RS4_BIGNA (40S ribosomal protein S4 OS=Bigelowiella natans GN=RPS4 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.401e-18
Identity = 53/194 (27.32%), Postives = 96/194 (49.48%), Query Frame = 1
Query:  109 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGI 690
            MA+G+KKH KR+++       K  G F  K SSGPH   + + L+ I++     A   +E   ++    + V+ K      +P   MD +S P  N+++R+L    G+  ++ I   E   K+CKV  +         I T D R ++     IK  D++ +    ++I   +KF+VG++ ++T G++ G + +
Sbjct:    1 MAKGIKKHQKRISSNTMIKYKKKLGIFNTKISSGPHSKVKSVSLLNIIKKFFHLADNNQEAQKVVKTGFLYVNGKKCLSHKFPISLMDTISFPLANKHYRVLLSKAGKLTVYEINQNEKDLKICKVIKIINASSKNKIIITDDLRELKINYAKIKVEDSLLIKTINDEIVYALKFEVGSLCLITRGKHLGTIAV 194          
BLAST of FC868732 vs. ExPASy Swiss-Prot
Match: RS4E_METS5 (30S ribosomal protein S4e OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps4e PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.326e-18
Identity = 58/191 (30.37%), Postives = 91/191 (47.64%), Query Frame = 1
Query:  130 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDP-----LIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVG 687
            H+ RL AP      K    +  + S GPH   + +PL L+LR+ L +  + +E   I+    VLVD +VR D  YP G MDV++IP  +   R++ D     +   I +EE+KFKL ++ +    + G+   N  DGR +           +    T+K+ +   +I     F     VM  GG+N G +G
Sbjct:    3 HITRLEAPWFLRASKKEYKWTVRASPGPHPLGKSIPLGLLLRDYLAFTSSLKESKKIISDGKVLVDGRVRRDYKYPVGLMDVIAIPHADLYLRIVPDRARLLKPVKISEEESKFKLVRLLNKTLVKGGLLQFNLEDGRNLLISKESTEMFKLPTLTTLKISIPNQEILGVYGFKENVYVMAVGGKNAGIIG 193          
BLAST of FC868732 vs. ExPASy Swiss-Prot
Match: RS4E_HALSA (30S ribosomal protein S4e OS=Halobacterium salinarium GN=rps4e PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.955e-18
Identity = 53/189 (28.04%), Postives = 90/189 (47.62%), Query Frame = 1
Query:  121 LKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVG 687
            +  H KRL+ PK W +++    F  K  +GPH     +PL+++LR+ L+Y     E    +    VLV+     D   P G  D+++ P  +E +R+  D  GR  L  I  + A  KL KV        G   +N +DG  +   +      D++ +D +TN+I    +++ G +V    G++ G +G
Sbjct:    1 MTNHQKRLSVPKSWPVERKTETFTAKAGAGPH-GESGVPLVVVLRDVLEYVDDTSEAQYAINTDGVLVNGDSVGDVNRPIGMFDILAFPDRDEYYRVFPDEGGRLGLTEIDADAAGSKLNKVTDKTTVSGGRTQLNFHDGSNLALDEDAYAGGDSVVVDTDTNEIVAHFQYEEGALVTAVAGQHAGDIG 188          
BLAST of FC868732 vs. ExPASy Swiss-Prot
Match: RS4E_HALS3 (30S ribosomal protein S4e OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rps4e PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.955e-18
Identity = 53/189 (28.04%), Postives = 90/189 (47.62%), Query Frame = 1
Query:  121 LKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVG 687
            +  H KRL+ PK W +++    F  K  +GPH     +PL+++LR+ L+Y     E    +    VLV+     D   P G  D+++ P  +E +R+  D  GR  L  I  + A  KL KV        G   +N +DG  +   +      D++ +D +TN+I    +++ G +V    G++ G +G
Sbjct:    1 MTNHQKRLSVPKSWPVERKTETFTAKAGAGPH-GESGVPLVVVLRDVLEYVDDTSEAQYAINTDGVLVNGDSVGDVNRPIGMFDILAFPDRDEYYRVFPDEGGRLGLTEIDADAAGSKLNKVTDKTTVSGGRTQLNFHDGSNLALDEDAYAGGDSVVVDTDTNEIVAHFQYEEGALVTAVAGQHAGDIG 188          
BLAST of FC868732 vs. ExPASy Swiss-Prot
Match: RS4E_HALLT (30S ribosomal protein S4e OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rps4e PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.084e-18
Identity = 53/190 (27.89%), Postives = 93/190 (48.95%), Query Frame = 1
Query:  121 LKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRY-PDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVG 687
            + +H KRL  P  W +++    F  K  +GPH     +PL+++LR+ L Y  + +E    L    VLV+    +D+  P G  D+++ P+  E FR+  D  GR  L S+ +E A  +L K+ +      G   +  +DG  +    D      D+I +D E+  +    +++ G +V    G++ GR+G
Sbjct:    1 MTRHQKRLAVPNSWPVERKTNTFTVKAGAGPH-GEAGVPLVVLLRDVLGYVDSTKEARYALNNDSVLVNGDAISDEQRPIGMFDILAFPERGEFFRVFPDEGGRLALTSVDEEAAGSRLGKITNKSVVPGGDAQLTLHDGTNVLVDADTEYDTKDSIVVDNESKDVVAHFEYEEGALVTAVAGQHAGRIG 189          
BLAST of FC868732 vs. ExPASy Swiss-Prot
Match: RS4E_THEVO (30S ribosomal protein S4e OS=Thermoplasma volcanium GN=rps4e PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.024e-17
Identity = 57/184 (30.98%), Postives = 89/184 (48.37%), Query Frame = 1
Query:  136 KRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVG 687
            KRL  P+   + +    + P P  G HK+   + L+ I+R+ L+ +   RE   IL    V VD KV  ++ +  GFMDV+ I  + E++R++Y+ +G   L S   + A  K  +V++          +  +DGR +   D  I   D +   L   KITE IK   GN   +TGG + G  G
Sbjct:    6 KRLMVPRTVKIPRKTYFWGPTPLPGRHKADHSVTLLTIIRDYLRLSDKEREATRILANGLVKVDGKVVKERKFGVGFMDVIEI--SGESYRVVYNNQGALVLVSESKDRANMKPLQVKNKVIAPGNKIQLGFHDGRVMVTEDRSISVGDVVIASLPDMKITEIIKMQPGNKAFITGGSHVGETG 187          
BLAST of FC868732 vs. ExPASy Swiss-Prot
Match: RS4E_NATPD (30S ribosomal protein S4e OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps4e PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.024e-17
Identity = 53/190 (27.89%), Postives = 94/190 (49.47%), Query Frame = 1
Query:  121 LKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPD-PLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVG 687
            +  H KRL  PK W +++   A+  K ++GPH   E +PL+++LR+ L Y  + +E    L Q  +L++    +D+  P G  D+++  +  E +R+  D  GR  L  I ++ A  KL K+        G   ++ +DG T+   D      ND+I +  +  +I     ++ G +V    G + GR+G
Sbjct:    1 MTNHQKRLAVPKSWPVERKEEAYTTKAAAGPH-GEEGVPLLIVLRDVLGYVDSKKEARYALEQDSILINGTAVSDERRPVGMFDILAFDEREEYYRIFPDEGGRLSLTPIDEDAAGSKLGKIVGKTQVAGGDTQLSLHDGETLLVEDATAYDTNDSIVVSNDGEEIVAHFTYEEGALVTAVSGAHAGRIG 189          
The following BLAST results are available for this feature:
BLAST of FC868732 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
RS4E_SULAC1.497e-2033.5130S ribosomal protein S4e OS=Sulfolobus acidocalda... [more]
RS4E_METHJ1.497e-2030.6930S ribosomal protein S4e OS=Methanospirillum hung... [more]
RS4E_NANEQ1.956e-2034.3830S ribosomal protein S4e OS=Nanoarchaeum equitans... [more]
RS4_BIGNA1.401e-1827.3240S ribosomal protein S4 OS=Bigelowiella natans GN... [more]
RS4E_METS55.326e-1830.3730S ribosomal protein S4e OS=Metallosphaera sedula... [more]
RS4E_HALSA6.955e-1828.0430S ribosomal protein S4e OS=Halobacterium salinar... [more]
RS4E_HALS36.955e-1828.0430S ribosomal protein S4e OS=Halobacterium salinar... [more]
RS4E_HALLT9.084e-1827.8930S ribosomal protein S4e OS=Halorubrum lacusprofu... [more]
RS4E_THEVO2.024e-1730.9830S ribosomal protein S4e OS=Thermoplasma volcaniu... [more]
RS4E_NATPD2.024e-1727.8930S ribosomal protein S4e OS=Natronomonas pharaoni... [more]

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Properties
Property NameValue
Genbank descriptionC31004B05EF AbioticL1 Citrus clementina cDNA clone C31004B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868732 ID=FC868732; Name=FC868732; organism=Citrus clementina; type=EST; length=692bp
GGGGAGTGGAGCTAGCAGCGCTTCTGAGTGCATTTTTCACTTCGTTTTTG
TTTTGCAGGACTGTGACACGCCGTTGGCGAATCCAAGCTCAGGCTCACGA
ACACAAAAATGGCGAGAGGTTTGAAGAAACATTTGAAGAGGCTTAATGCC
CCAAAGCACTGGATGCTTGACAAACTTGGTGGAGCATTTGCTCCCAAGCC
TTCATCTGGGCCACACAAATCAAGGGAGTGTTTGCCCTTAATTCTTATCT
TACGCAACCGCTTGAAGTATGCTCTTACATACCGAGAAGTCATTGCAATT
TTGATGCAACGACATGTGTTGGTTGATGCTAAGGTTCGCACAGATAAGAC
TTACCCTGCTGGGTTCATGGATGTTGTGTCAATTCCAAAGACGAATGAGA
ACTTCCGTCTCCTTTACGACACCAAGGGCCGGTTCCGCCTTCATTCAATC
AGGGATGAGGAGGCTAAGTTCAAGCTCTGCAAGGTTCGATCAGTGCAATT
TGGGCAGAAGGGAATCCCTTACATCAACACTTATGATGGGAGGACTATTC
GCTACCCAGACCCACTCATCAAGGCCAATGATACCATCAAGCTGGACCTG
GAGACTAACAAGATCACCGAGTTCATCAAGTTTGATGTTGGAAATGTTGT
GATGGTGACTGGAGGGAGAAACAGAGGACGTGTTGGAATCAT
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