FC868735

Overview
NameFC868735
Unique NameFC868735
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868735 vs. ExPASy Swiss-Prot
Match: SEC13_ASPTN (Protein transport protein sec13 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=sec13 PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 4.742e-43
Identity = 84/163 (51.53%), Postives = 109/163 (66.87%), Query Frame = 3
Query:  225 TGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQND--------WTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGSTSVSWAPGMA 689
            +GHED +HD  +D+YG+RLAT SSD +IK+  +   A + + TLKGH G VW VAWAHPKFG+ILAS SYDG+V+IW+E +QN         WT+   F+ H +SVN ++WAPHE G  L C SSDG++SV     D  W T +I  AH +G  S+SWAP  A
Sbjct:   10 SGHEDMIHDAGLDYYGRRLATCSSDKTIKVFEIEGEAHRLVETLKGHEGAVWCVAWAHPKFGTILASSSYDGKVLIWREQHQNTTSPAAGSAWTKVFDFSLHTASVNMVSWAPHESGCLLGCASSDGHVSVL-EFQDNSW-THQIFHAHGMGVNSISWAPAAA 170          
BLAST of FC868735 vs. ExPASy Swiss-Prot
Match: SEC13_ASPNC (Protein transport protein sec13 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=sec13 PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.057e-42
Identity = 87/171 (50.88%), Postives = 113/171 (66.08%), Query Frame = 3
Query:  204 MPAQKIE-TGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQN--------DWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGSTSVSWAPGMA 689
            M AQ I  +GH++ +HD  +D+YG+RLAT SSD +IKI  +     + + TLKGH G VW VAWAHPKFG+ILAS SYDG+V+IW+E +QN         WT+   F+ H +SVN ++WAPHE G  LAC SSDG++SV     D  W T +I  AH +G  S+SWAP  A
Sbjct:    1 MAAQVISNSGHDEMIHDAGLDYYGRRLATCSSDKTIKIFEIEGETHRLIETLKGHEGAVWCVAWAHPKFGTILASSSYDGKVLIWREQHQNATSPVAGGAWTKVFDFSLHTASVNMVSWAPHESGCLLACASSDGHVSVL-EFRDNSW-THQIFHAHGMGVNSISWAPAAA 169          
BLAST of FC868735 vs. ExPASy Swiss-Prot
Match: SEC13_EMENI (Protein transport protein sec13 OS=Emericella nidulans GN=sec13 PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.380e-42
Identity = 83/160 (51.88%), Postives = 108/160 (67.50%), Query Frame = 3
Query:  225 TGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQND--------WTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGSTSVSWAP 680
            +GH+D +HD  +D+YG+RLAT SSD +IKI  +     + + TLKGH GPVW V WAHPKFG+ILAS SYDG+V+IW+E +Q+         WT+   F+ H +SVN I+WAPHE G  LAC SSDG++SV     D  W T +I  AH +G  S+SWAP
Sbjct:   10 SGHDDMIHDAGLDYYGRRLATCSSDKTIKIFEIEGDTHKLVETLKGHEGPVWCVEWAHPKFGTILASSSYDGKVLIWREQHQSSTAPIGSGAWTKVFDFSLHTASVNMISWAPHETGCLLACASSDGHVSVL-EFRDNSW-THQIFHAHGMGVNSISWAP 167          
BLAST of FC868735 vs. ExPASy Swiss-Prot
Match: SEC13_PICPG (Protein transport protein SEC13 OS=Pichia pastoris (strain GS115) GN=SEC13 PE=3 SV=3)

HSP 1 Score: 170.244 bits (430), Expect = 8.944e-42
Identity = 81/154 (52.60%), Postives = 102/154 (66.23%), Query Frame = 3
Query:  219 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGSTSVSWAP 680
            I   H+D +HD  +D+YG+RLAT SSD +IKI  +     + + TL GH GPVWQVAWAHPKFG ILASCSYDG+V+IWKE N   W +    + H++SVNS++WAPHE G  L C SSDG IS+     DGG     + Q H +G  + SWAP
Sbjct:    4 IGNAHDDLIHDAVLDYYGRRLATCSSDKTIKIFEIDGENQRLVETLIGHEGPVWQVAWAHPKFGVILASCSYDGKVLIWKEDN-GVWNKVAEHSVHQASVNSVSWAPHEYGPVLLCASSDGKISI-VEFKDGGALEPIVIQGHAIGVNAASWAP 155          
BLAST of FC868735 vs. ExPASy Swiss-Prot
Match: SEC13_CANAL (Protein transport protein SEC13 OS=Candida albicans GN=SEC13 PE=1 SV=2)

HSP 1 Score: 170.244 bits (430), Expect = 8.944e-42
Identity = 83/156 (53.21%), Postives = 103/156 (66.03%), Query Frame = 3
Query:  219 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHL-ATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQ-NDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGSTSVSWAP 680
            I   H+D +HD  +D+YGKRLAT SSD +IKI  L  + +  L  TL GH GPVWQV+WAHPKFGSILASCSYDG+ +IWKE  +   W+       H++SVNS++WAPHELG  L C SSDG +SV     DG       D AH +G+ S +WAP
Sbjct:    4 IGNAHDDLIHDAVLDYYGKRLATCSSDKTIKIFDLDGTDNYKLITTLTGHEGPVWQVSWAHPKFGSILASCSYDGKALIWKEQPETQQWSIIAEHTVHQASVNSVSWAPHELGAVLLCTSSDGKVSVVDFNDDGTTSHVIFD-AHAIGANSATWAP 158          
BLAST of FC868735 vs. ExPASy Swiss-Prot
Match: SEC13_PICST (Protein transport protein SEC13 OS=Pichia stipitis GN=SEC13 PE=3 SV=2)

HSP 1 Score: 169.859 bits (429), Expect = 1.168e-41
Identity = 83/156 (53.21%), Postives = 103/156 (66.03%), Query Frame = 3
Query:  219 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHL-ATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQ-NDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGSTSVSWAP 680
            I   H D +HD  +D+YGKRLAT SSD SI I  +  + S  L +TL GH GPVWQV+WAHPKFGSILASCS+DG+ +IWKE  +   W+     + H++SVNS++WAPHELG  L C SSDG +SV     DG       D AH +G+ S SWAP
Sbjct:    4 IGNAHNDLIHDAVLDYYGKRLATCSSDKSINIFDIDGTESYKLVSTLTGHDGPVWQVSWAHPKFGSILASCSFDGKALIWKEQPETQQWSIIAEHSVHQASVNSVSWAPHELGAVLLCASSDGKVSVVDFNDDGTTSHVVFD-AHAIGANSASWAP 158          
BLAST of FC868735 vs. ExPASy Swiss-Prot
Match: SEC13_DEBHA (Protein transport protein SEC13 OS=Debaryomyces hansenii GN=SEC13 PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.399e-41
Identity = 83/156 (53.21%), Postives = 102/156 (65.38%), Query Frame = 3
Query:  219 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLA-TLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQ-NDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGSTSVSWAP 680
            I   H+D +HD  +D+YGKRLAT SSD +IK+  +  + +  L  TL GH GPVWQVAWAHPKFGSILASCSYDG+ +IWKE  +   W+       H++SVNS++WAPHELG  L C SSDG +SV     DG       D AH +G  S SWAP
Sbjct:    4 IGNAHDDLIHDAVLDYYGKRLATCSSDKTIKLFEVEGTENYKLVETLIGHEGPVWQVAWAHPKFGSILASCSYDGKALIWKEQPETQQWSIIAEHTVHQASVNSVSWAPHELGAILLCTSSDGKVSVVDFNDDGTTSHIIFD-AHAIGVNSASWAP 158          
BLAST of FC868735 vs. ExPASy Swiss-Prot
Match: SEC13_NEUCR (Protein transport protein sec-13 OS=Neurospora crassa GN=sec-13 PE=3 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 4.439e-41
Identity = 79/152 (51.97%), Postives = 103/152 (67.76%), Query Frame = 3
Query:  225 TGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGSTSVSWAP 680
            +GH+D +HD  +D+YG+RLAT SSD +IKI  +   + + + TLKGH G VW VAWAHPK+G+ILAS  YDG+V+IW+E     W +   F  HK+SVN ++W+PHE G  LAC SSDGN+SV     D  W+   I  AH +G  SVSWAP
Sbjct:   11 SGHDDMIHDAVLDYYGRRLATCSSDRTIKIFEIEGESQRLVETLKGHDGAVWSVAWAHPKYGNILASAGYDGKVLIWRE-QAGSWQRIFDFALHKASVNIVSWSPHEAGCLLACASSDGNVSVL-EFKDNSWE-HNIFHAHGLGVNSVSWAP 159          
BLAST of FC868735 vs. ExPASy Swiss-Prot
Match: SEC13_YARLI (Protein transport protein SEC13 OS=Yarrowia lipolytica GN=SEC13 PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.687e-40
Identity = 80/150 (53.33%), Postives = 99/150 (66.00%), Query Frame = 3
Query:  231 HEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGSTSVSWAP 680
            H+D +HD  +D+YGKRLAT SSD +IKI  +     + + TL+GH GPVWQV+WAHPKFGSI+AS SYDG+V IW+E N   WT     + H +SVNS+ WAP E G  L C SSDGN+SV      G  + T    AH VG+ S SWAP
Sbjct:    8 HDDLIHDAVLDYYGKRLATCSSDKTIKIFEIDGDNHKLVETLRGHEGPVWQVSWAHPKFGSIIASASYDGKVFIWREEN-GRWTNI-AQHQHNASVNSVVWAPQEYGPLLLCASSDGNVSVVEFKEGGNCEATTF-AAHDVGANSASWAP 154          
BLAST of FC868735 vs. ExPASy Swiss-Prot
Match: SC131_CANGA (Protein transport protein SEC13-1 OS=Candida glabrata GN=SEC131 PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.687e-40
Identity = 80/155 (51.61%), Postives = 100/155 (64.52%), Query Frame = 3
Query:  216 KIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGSTSVSWAP 680
            +I   H D +HD  +D+YGK+LAT SSD +IKI  +   + + + TL GH GPVW+V WAHPKFG+ILASCSYDG+VIIWKE N   W+Q      H +SVNS+ WAPHE G  L   SSDG +SV     + G  T  I  AH +G  + SWAP
Sbjct:    3 EIANAHNDLIHDAVLDYYGKKLATCSSDKTIKIFEVEGESHKLVDTLVGHEGPVWRVDWAHPKFGTILASCSYDGKVIIWKEENDR-WSQIAVHAVHTASVNSVQWAPHEYGALLLAASSDGKVSV-VEFKENGTATPLIFDAHAIGVNAASWAP 155          
The following BLAST results are available for this feature:
BLAST of FC868735 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
SEC13_ASPTN4.742e-4351.53Protein transport protein sec13 OS=Aspergillus ter... [more]
SEC13_ASPNC1.057e-4250.88Protein transport protein sec13 OS=Aspergillus nig... [more]
SEC13_EMENI1.380e-4251.88Protein transport protein sec13 OS=Emericella nidu... [more]
SEC13_PICPG8.944e-4252.60Protein transport protein SEC13 OS=Pichia pastoris... [more]
SEC13_CANAL8.944e-4253.21Protein transport protein SEC13 OS=Candida albican... [more]
SEC13_PICST1.168e-4153.21Protein transport protein SEC13 OS=Pichia stipitis... [more]
SEC13_DEBHA3.399e-4153.21Protein transport protein SEC13 OS=Debaryomyces ha... [more]
SEC13_NEUCR4.439e-4151.97Protein transport protein sec-13 OS=Neurospora cra... [more]
SEC13_YARLI1.687e-4053.33Protein transport protein SEC13 OS=Yarrowia lipoly... [more]
SC131_CANGA1.687e-4051.61Protein transport protein SEC13-1 OS=Candida glabr... [more]

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Properties
Property NameValue
Genbank descriptionC31004B08EF AbioticL1 Citrus clementina cDNA clone C31004B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868735 ID=FC868735; Name=FC868735; organism=Citrus clementina; type=EST; length=690bp
GAGGAAAGAAGCTTTTTTAAGTTCCGACCACCACGGAAAAAGCCTAAAAA
CGTTTATTACTCTCAGCCGGTGCTACTGGTCGGTCTTCGAATCCGCTCCT
CTCTTAAGAAATTTGGAGCTGAGAACATAAGATAAAAAGGAGCTACGAAC
TAGTGATCAAGGAGTTGAAGTTTGAGGGGTAAAATAAAGAAATATAAAGT
AAGATGCCTGCACAAAAAATTGAAACTGGTCATGAAGACACTGTCCATGA
TGTAGCCATGGATTTCTATGGAAAACGTTTAGCCACAGCTTCGTCTGACT
CCAGCATTAAGATAATTGGTTTAAGCAACTCTGCTTCCCAGCACCTTGCT
ACATTGAAAGGCCATAGAGGTCCTGTTTGGCAAGTTGCATGGGCACACCC
CAAGTTTGGGTCAATCCTTGCTTCCTGTTCCTATGATGGCCAAGTTATTA
TCTGGAAGGAAGGTAATCAAAATGATTGGACACAGGCTCATACTTTTAAT
GATCATAAATCATCTGTCAACTCCATTGCGTGGGCACCTCATGAACTTGG
TCTCTCCTTGGCTTGTGGATCTTCTGATGGGAACATCTCAGTCTTTACTG
CTACAGCTGATGGTGGCTGGGATACTACCAGGATAGACCAGGCCCATCCA
GTCGGAAGTACATCTGTTTCATGGGCCCCCGGCATGGCTC
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