FC868735

Overview
NameFC868735
Unique NameFC868735
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868735 vs. ExPASy Swiss-Prot
Match: CIAO1_DICDI (Probable cytosolic iron-sulfur protein assembly protein OS=Dictyostelium discoideum GN=ciao1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.252e-11
Identity = 45/134 (33.58%), Postives = 65/134 (48.51%), Query Frame = 3
Query:  228 GHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQ--HLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWD 623
            GHE TV  VA    G+ LA AS D+S  I   S    +  H+++L+GH   V  VAW     G++LA+CS D  + IW+  + ND+      + H   +  + W P+E    L   SS  +   F    DG W+
Sbjct:   67 GHEKTVRRVAWSPCGRFLAGASFDASTSIWEKSKDELEFTHVSSLEGHTYEVKSVAW--DSTGTLLATCSRDKSIWIWQMEDDNDFECLSINSGHGQDIKCVLWHPNE---ELLASSSYDDTIKFWKDIDGDWE 195          
BLAST of FC868735 vs. ExPASy Swiss-Prot
Match: CIAO1_XENTR (Probable cytosolic iron-sulfur protein assembly protein ciao1 OS=Xenopus tropicalis GN=ciao1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.165e-11
Identity = 46/150 (30.67%), Postives = 70/150 (46.67%), Query Frame = 3
Query:  228 GHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGSTSVSWA 677
            GH+ TV  V+    G  LA+AS D++  I        + + TL+GH   V  VAWA    GS+LA+CS D  V +W+   + ++      N H   V  + W P++    LA  S D ++ ++    D  W    +  A   G TS  W+
Sbjct:   59 GHQRTVRKVSWSPCGNYLASASFDATTCIWMKKKEEFECITTLEGHENEVKSVAWAPS--GSLLATCSRDKSVWVWEVDEEEEYECVSVLNSHTQDVKHVVWHPNQ--ELLASASYDDSVKLYREEED-DW----VCCATLEGHTSTVWS 199          
The following BLAST results are available for this feature:
BLAST of FC868735 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
CIAO1_DICDI6.252e-1133.58Probable cytosolic iron-sulfur protein assembly pr... [more]
CIAO1_XENTR8.165e-1130.67Probable cytosolic iron-sulfur protein assembly pr... [more]

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Properties
Property NameValue
Genbank descriptionC31004B08EF AbioticL1 Citrus clementina cDNA clone C31004B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868735 ID=FC868735; Name=FC868735; organism=Citrus clementina; type=EST; length=690bp
GAGGAAAGAAGCTTTTTTAAGTTCCGACCACCACGGAAAAAGCCTAAAAA
CGTTTATTACTCTCAGCCGGTGCTACTGGTCGGTCTTCGAATCCGCTCCT
CTCTTAAGAAATTTGGAGCTGAGAACATAAGATAAAAAGGAGCTACGAAC
TAGTGATCAAGGAGTTGAAGTTTGAGGGGTAAAATAAAGAAATATAAAGT
AAGATGCCTGCACAAAAAATTGAAACTGGTCATGAAGACACTGTCCATGA
TGTAGCCATGGATTTCTATGGAAAACGTTTAGCCACAGCTTCGTCTGACT
CCAGCATTAAGATAATTGGTTTAAGCAACTCTGCTTCCCAGCACCTTGCT
ACATTGAAAGGCCATAGAGGTCCTGTTTGGCAAGTTGCATGGGCACACCC
CAAGTTTGGGTCAATCCTTGCTTCCTGTTCCTATGATGGCCAAGTTATTA
TCTGGAAGGAAGGTAATCAAAATGATTGGACACAGGCTCATACTTTTAAT
GATCATAAATCATCTGTCAACTCCATTGCGTGGGCACCTCATGAACTTGG
TCTCTCCTTGGCTTGTGGATCTTCTGATGGGAACATCTCAGTCTTTACTG
CTACAGCTGATGGTGGCTGGGATACTACCAGGATAGACCAGGCCCATCCA
GTCGGAAGTACATCTGTTTCATGGGCCCCCGGCATGGCTC
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