FC868740
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC868740 vs. ExPASy Swiss-Prot
Match: PSMB_PYRFU (Proteasome subunit beta OS=Pyrococcus furiosus GN=psmB PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 4.093e-16 Identity = 56/165 (33.94%), Postives = 89/165 (53.94%), Query Frame = 1 Query: 211 GTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHL-----FNYQGYV*AALVLGGVDCTGPHLHTIYPHGSTDTLPFANMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAI 690 GTT VGL+ ++GV+L ADTRA+ G I+ KN KIH + ++ GAG D + ++ ++ L++ G+E V TLL L F Y G+ ++GG D P L ++ G +A GSG A ++ +S+Y+E ++ ++GI+L V AI Sbjct: 10 GTTTVGLVCKEGVVLAADTRASLGNIIYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLLKAEANLYKSTVGKEMSVKALATLLANILNGSKYFPYLGW----FLVGGYD-EKPRLFSVDMVGGITEDNYAAAGSGMEFAYSILDSEYREEMSVNDGIKLAVKAI 169
BLAST of FC868740 vs. ExPASy Swiss-Prot
Match: PSB9_RAT (Proteasome subunit beta type-9 OS=Rattus norvegicus GN=Psmb9 PE=1 SV=2) HSP 1 Score: 84.7297 bits (208), Expect = 5.346e-16 Identity = 53/162 (32.72%), Postives = 86/162 (53.09%), Query Frame = 1 Query: 208 TGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYV*AALVLGGVD-CTGPHLHTIYPHGSTDTLPFANMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAI 690 TGTTI+ + F GV++G+D+R + G V ++ +K+ + IYC +G+AAD +A+ DM + QL+LH V+ A ++K + Y+ + A L++ G D G ++ G PFA GSGS ++ YK G+T +E + DAI Sbjct: 19 TGTTIMAVEFDGGVVVGSDSRVSAGAAVVNRVFDKLSPLHQRIYCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANIVKNISYKYREDLLAHLMVAGWDQHEGGQVYGTM-GGMLIRQPFAIGGSGSTYIYGYVDAAYKPGMTPEECRRFTTDAI 179
BLAST of FC868740 vs. ExPASy Swiss-Prot
Match: PSMB_METTE (Proteasome subunit beta OS=Methanosarcina thermophila GN=psmB PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 9.118e-16 Identity = 49/163 (30.06%), Postives = 87/163 (53.37%), Query Frame = 1 Query: 211 GTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGY--V*AALVLGGVDCTGPHLHTI-YPHGSTDTLPFANMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAI 690 GTT VG++ DG++L ++ RAT G + K +K++ + + AG+ D + + +VS + QL++ ES + +T L + + Y + L++GGVD GP ++++ GS + + GSGS A + E +Y+E +T EG+ L + AI Sbjct: 9 GTTTVGVVCTDGIVLASEQRATMGHFIASKTAKKVYQIDDLVGMTTAGSVGDAQQLVRLVSVESQLYKMRRD-ESMTIKGITTLMSNFLSRNRYYPMMVQLLIGGVDKNGPGIYSLDAMGGSIEETRISATGSGSPMAYGVLEDQYRENMTVKEGLDLAIRAI 170
BLAST of FC868740 vs. ExPASy Swiss-Prot
Match: PSB9_HUMAN (Proteasome subunit beta type-9 OS=Homo sapiens GN=PSMB9 PE=1 SV=2) HSP 1 Score: 83.5741 bits (205), Expect = 1.191e-15 Identity = 53/163 (32.52%), Postives = 86/163 (52.76%), Query Frame = 1 Query: 208 TGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYV*AALVLGGVDCT--GPHLHTIYPHGSTDTLPFANMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAI 690 TGTTI+ + F GV++G+D+R + G V ++ +K+ + IYC +G+AAD +AV DM + QL+LH V+ A +++ + Y+ + A L++ G D G T+ G PFA GSGS ++ YK G++ +E + DAI Sbjct: 19 TGTTIMAVEFDGGVVMGSDSRVSAGEAVVNRVFDKLSPLHERIYCALSGSAADAQAVADMAAYQLELHGIELEEPPLVLAAANVVRNISYKYREDLSAHLMVAGWDQREGGQVYGTL--GGMLTRQPFAIGGSGSTFIYGYVDAAYKPGMSPEECRRFTTDAI 179
BLAST of FC868740 vs. ExPASy Swiss-Prot
Match: PSMB_ARCFU (Proteasome subunit beta OS=Archaeoglobus fulgidus GN=psmB PE=1 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 3.465e-15 Identity = 49/166 (29.52%), Postives = 85/166 (51.20%), Query Frame = 1 Query: 211 GTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGY-V*AALVLGGVDCTGPHLHTIYP-HGSTDTLPFANMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGI 702 GTT VGL+ +DGV++ + RAT G + K +KI+ +A + AG+ D + + ++ + L+ R+ V TL L +Y+ + L++GG+D G +++I P G+ + GSGSL A + E ++ + DE ++L V AI S + Sbjct: 11 GTTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIATLTSNLLNSYRYFPYLVQLLIGGIDSEGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAVRAIYSAM 176
BLAST of FC868740 vs. ExPASy Swiss-Prot
Match: PSMB_PYRAB (Proteasome subunit beta OS=Pyrococcus abyssi GN=psmB PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 4.525e-15 Identity = 56/166 (33.73%), Postives = 88/166 (53.01%), Query Frame = 1 Query: 211 GTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQ--GYV*AALVLGGVDCTGPHLHTIYPHGSTDTLPFANMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGI 702 GTT VG++ DGV+L AD RA+ G IV KN KIH + ++ GAG D + ++ ++ +L+ +G+ V TLL L + Y+ A ++GG D P L+++ G + GSG A ++ +S+Y+E L EGI++ V+AI S I Sbjct: 10 GTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLLRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYL-AWFLVGGFD-EKPRLYSVDMMGGITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAI 173
BLAST of FC868740 vs. ExPASy Swiss-Prot
Match: PSMB_METJA (Proteasome subunit beta OS=Methanocaldococcus jannaschii GN=psmB PE=1 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 4.525e-15 Identity = 53/167 (31.74%), Postives = 89/167 (53.29%), Query Frame = 1 Query: 211 GTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGY-V*AALVLGGVD-CTGPHLHTIYP-HGSTDTLPFANMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGI 702 GTT VGLI D VIL D RA+ G +V DK +K++ + I AG+ D +A+ ++ ++ +L++ TGR + TLL L + + + +++GG D G L ++ P G + F GSGS A + E+ Y ++ +EGI+L ++A+ S + Sbjct: 6 GTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLACATLLSNILHSSRMFPFLTQIIIGGYDLLEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGYDRDMSVEEGIKLALNALKSAM 172
BLAST of FC868740 vs. ExPASy Swiss-Prot
Match: PSB9_BOVIN (Proteasome subunit beta type-9 OS=Bos taurus GN=PSMB9 PE=1 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 7.719e-15 Identity = 49/161 (30.43%), Postives = 84/161 (52.17%), Query Frame = 1 Query: 208 TGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYV*AALVLGGVDCTGPHLHTIYPHGSTDTLPFANMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAI 690 TGTTI+ + F GV++G+D+R + G V ++ +K+ + +IYC +G+AAD +A+ DM + QL+LH V+ A +++ + Y+ + A L++ G D G PFA GSGS ++ YK G++ +E + +AI Sbjct: 19 TGTTIMAVEFDGGVVVGSDSRVSAGEAVVNRVFDKLSPLHQHIYCALSGSAADAQAIADMAAYQLELHGMELEEPPLVLAAANVVRNITYKYREDLSAHLMVAGWDQREGGQVYGTMSGMLIRQPFAIGGSGSTYIYGYVDAAYKPGMSPEECRRFTTNAI 179
BLAST of FC868740 vs. ExPASy Swiss-Prot
Match: PSB9_MUSMB (Proteasome subunit beta type-9 OS=Mus musculus bactrianus GN=Psmb9 PE=1 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 1.008e-14 Identity = 49/161 (30.43%), Postives = 82/161 (50.93%), Query Frame = 1 Query: 208 TGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYV*AALVLGGVDCTGPHLHTIYPHGSTDTLPFANMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAI 690 TGTTI+ + F GV++G+D+R + G V ++ +K+ + I+C +G+AAD +A+ DM + QL+LH V+ A ++K + Y+ + A L++ G D G PF GSGS ++ YK G+T +E + +AI Sbjct: 19 TGTTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIVAGWDQREGGQVYGTMGGMLIRQPFTISGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAI 179
BLAST of FC868740 vs. ExPASy Swiss-Prot
Match: PSMB_THEAC (Proteasome subunit beta OS=Thermoplasma acidophilum GN=psmB PE=1 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.317e-14 Identity = 52/164 (31.71%), Postives = 83/164 (50.61%), Query Frame = 1 Query: 205 KTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHL--FNYQGYV*AALVLGGVDCTGPHLHTIYPHGSTDTLPFANMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAI 690 +TGTT VG+ +D VI+ + R T + KN +K+ + AG D + + + ++L+L+R + TLL L Y Y+ L++GG+D T PH+ +I G + +A+ GSGS + ES+Y E +T DEG+ LV+ AI Sbjct: 6 ETGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVNMPIEAVATLLSNMLNQVKYMPYM-VQLLVGGID-TAPHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAI 167 The following BLAST results are available for this feature:
BLAST of FC868740 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 60
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Sequences
The
following sequences are available for this feature:
EST sequence >FC868740 ID=FC868740; Name=FC868740; organism=Citrus clementina; type=EST; length=721bpback to top |