FC868740

Overview
NameFC868740
Unique NameFC868740
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15299 contig Ccv1_Contig15299:30..750. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868740 vs. ExPASy Swiss-Prot
Match: PSB9_MUSPL (Proteasome subunit beta type-9 OS=Mus platythrix GN=Psmb9 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.317e-14
Identity = 49/161 (30.43%), Postives = 82/161 (50.93%), Query Frame = 1
Query:  208 TGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYV*AALVLGGVDCTGPHLHTIYPHGSTDTLPFANMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAI 690
            TGTTI+ + F  GV++G+D+R + G  V ++  +K+  +   I+C  +G+AAD +A+ DM + QL+LH         V+ A  ++K   + Y+  + A L++ G D            G     PF   GSGS       ++ YK G+T +E  +   +AI
Sbjct:   19 TGTTIMAVEFDGGVVVGSDSRVSAGEAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIVAGWDQREGGQVYGTMGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTSEECRRFTTNAI 179          
BLAST of FC868740 vs. ExPASy Swiss-Prot
Match: PSB9_MUSSI (Proteasome subunit beta type-9 OS=Mus spicilegus GN=Psmb9 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.720e-14
Identity = 49/161 (30.43%), Postives = 82/161 (50.93%), Query Frame = 1
Query:  208 TGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYV*AALVLGGVDCTGPHLHTIYPHGSTDTLPFANMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAI 690
            TGTTI+ + F  GV++G+D+R + G  V ++  +K+  +   I+C  +G+AAD +A+ DM + QL+LH         V+ A  ++K   + Y+  + A L++ G D            G     PF   GSGS       ++ YK G+T +E  +   +AI
Sbjct:   19 TGTTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIVAGWDQREGGQVYGTMGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAI 179          
BLAST of FC868740 vs. ExPASy Swiss-Prot
Match: PSB9_MUSDU (Proteasome subunit beta type-9 OS=Mus dunni GN=Psmb9 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.720e-14
Identity = 49/161 (30.43%), Postives = 82/161 (50.93%), Query Frame = 1
Query:  208 TGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYV*AALVLGGVDCTGPHLHTIYPHGSTDTLPFANMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAI 690
            TGTTI+ + F  GV++G+D+R + G  V ++  +K+  +   I+C  +G+AAD +A+ DM + QL+LH         V+ A  ++K   + Y+  + A L++ G D            G     PF   GSGS       ++ YK G+T +E  +   +AI
Sbjct:   19 TGTTIMAVEFDGGVVVGSDSRVSAGAAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIVAGWDQREGGQVYGTMGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAI 179          
BLAST of FC868740 vs. ExPASy Swiss-Prot
Match: PSB9_MOUSE (Proteasome subunit beta type-9 OS=Mus musculus GN=Psmb9 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.720e-14
Identity = 49/161 (30.43%), Postives = 82/161 (50.93%), Query Frame = 1
Query:  208 TGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYV*AALVLGGVDCTGPHLHTIYPHGSTDTLPFANMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAI 690
            TGTTI+ + F  GV++G+D+R + G  V ++  +K+  +   I+C  +G+AAD +A+ DM + QL+LH         V+ A  ++K   + Y+  + A L++ G D            G     PF   GSGS       ++ YK G+T +E  +   +AI
Sbjct:   19 TGTTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIVAGWDQREGGQVYGTMGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAI 179          
BLAST of FC868740 vs. ExPASy Swiss-Prot
Match: PSMB_METTH (Proteasome subunit beta OS=Methanobacterium thermoautotrophicum GN=psmB PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.534e-14
Identity = 47/165 (28.48%), Postives = 82/165 (49.70%), Query Frame = 1
Query:  211 GTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGY-V*AALVLGGVDCTGPHLHTIYPHGSTDTLPFANMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGI 702
            GTT VG+  +DGV+   + RA+ G ++  K  +KI  +  +I    AG+ AD +++   + ++  L+R     +  +  A  L    L + + Y      +LGGVD  G  ++++ P G      F + GSGS  A  + E +Y + L  DE + + + AI S +
Sbjct:    9 GTTTVGITCKDGVVFATERRASMGNLIAHKATDKIFKIDEHIAATIAGSVADAQSLMKYLKAEAALYRMRNSEKISIEAAAALAANILHSSRFYPFIVQTLLGGVDENGAKIYSLDPSGGMIPDKFVSTGSGSPVAYGVLEDRYSDELYVDEAVDVAIRAIKSAM 173          
BLAST of FC868740 vs. ExPASy Swiss-Prot
Match: PSB6_ENCCU (Probable proteasome subunit beta type-6 OS=Encephalitozoon cuniculi GN=PRE3 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.243e-13
Identity = 46/165 (27.88%), Postives = 84/165 (50.91%), Query Frame = 1
Query:  208 TGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYV*AALVLGGVDCTGPHLHTIYPHGSTDTLPFANMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGI 702
            TGTTI+ + + DGV++GAD+R + G  V  +  +K+  +   I+ C +G++ADT+ ++  +   L ++        +V  A  L  K ++     + A L++ G D   P +  I   GS     +A  GSGS       +  ++ G++ +EGI+ V +A+   I
Sbjct:    9 TGTTIIAIKYDDGVLIGADSRTSMGAYVSSRVTDKLTQITDKIFVCRSGSSADTQMISSYLRMYLSMYSQLEDSIPQVQRAAALASKIIYENPSLL-AGLIVAGYD-DKPRVFNISLGGSLTERDWAIGGSGSAFIYGYCDVNWRSGMSLEEGIRFVRNAVSCAI 171          
BLAST of FC868740 vs. ExPASy Swiss-Prot
Match: PSMA_METKA (Proteasome subunit alpha OS=Methanopyrus kandleri GN=psmA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.436e-13
Identity = 51/167 (30.54%), Postives = 82/167 (49.10%), Query Frame = 1
Query:  205 KTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRV---VTALTLLKKHLFNYQGY--V*AALVLGGVDCTGPHLHTIYPHGSTDTLPFANMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAI 690
            K GTT +G+  ++GV+LG D R T   ++  ++ EK++ +  +I    AG  AD   + +    + Q +RY  G    V   V A+  LK+    + G      AL++ GVD  G  L    P G+        +G G   A+ +FE +Y+E +T  E I+L V A+
Sbjct:   34 KRGTTALGIKVEEGVVLGVDKRVTS-KLIEPESIEKVYQIDTHIGAATAGLVADARVLVERARIEAQTYRYTYGEPIDVDVLVKAICDLKQVYTQHGGVRPFGTALLIAGVDTKGCRLFETDPSGALTEHKATAIGEGRQEALDVFEEEYREDMTLQEAIELAVRAL 199          
BLAST of FC868740 vs. ExPASy Swiss-Prot
Match: PSB5B_ARATH (Proteasome subunit beta type-5-B OS=Arabidopsis thaliana GN=PBE2 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.609e-12
Identity = 59/192 (30.73%), Postives = 94/192 (48.96%), Query Frame = 1
Query:  139 SFDLCRRNDM--LAKKGVNLPSFRKTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGY-V*AALVLGGVDCTGPHLHTIYPHGSTDTLPFANMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIF 705
            SFDL R  D     KK V +    K GTT +  IF++GV++ AD+RA+ G  +  ++ +KI  + P +    AG AAD +     +  + +LH     R   V  A  LL   L++Y+G  +    ++ G D TGP L+ +   G        ++GSGS  A  + +S YK  ++ +E  +L   +I    F
Sbjct:   32 SFDLPRTTDFDGFQKKAVEMVKPAK-GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVSGASKLLANMLYSYRGMGLSVGTMIAGWDETGPGLYYVDNEGGRLKGDRFSVGSGSPYAYGVLDSGYKFDMSVEEASELARRSIYHATF 222          
BLAST of FC868740 vs. ExPASy Swiss-Prot
Match: PSB5_SPIOL (Proteasome subunit beta type-5 OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.683e-12
Identity = 58/187 (31.02%), Postives = 91/187 (48.66%), Query Frame = 1
Query:  139 SFDLCRRNDM--LAKKGVNLPSFRKTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGY-V*AALVLGGVDCTGPHLHTIYPHGSTDTLPFANMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAI 690
            SFDL    D     K+ V +    K GTT +  IF+ GV++ AD+RA+ G  +  ++ +KI  + P +    AG AAD +     +  + +LH     R   V  A  LL   L+NY+G  +    ++ G D TGP L+ +   G        ++GSGS  A  + ++ YK  +T +E  +L   AI
Sbjct:   30 SFDLPNPTDFDGFQKEAVQMVKPAK-GTTTLAFIFKHGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYNYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGMRFSVGSGSPYAYGVLDNGYKYDMTVEEASELARRAI 215          
BLAST of FC868740 vs. ExPASy Swiss-Prot
Match: PSMA_PYRAB (Proteasome subunit alpha OS=Pyrococcus abyssi GN=psmA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.116e-12
Identity = 52/167 (31.14%), Postives = 84/167 (50.30%), Query Frame = 1
Query:  205 KTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESR---VVTALTLLKKHLFNYQGY--V*AALVLGGVDCTGPHLHTIYPHGSTDTLPFANMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAI 690
            K G T VG+  +DGV+L  + R T   ++  ++ EKI  +  +I    +G  AD   + +    + Q+HR   G  +    +V  +  LK+    Y G     AAL++ GV+   P L+   P G+        +GSG   AMA+FE KY++ +T DE I+L + A+
Sbjct:   34 KRGATAVGVKCKDGVVLAVEKRITSR-LIEPESYEKIFQIDDHIAAASSGIIADARVLVNRARLEAQIHRLTYGEPAPLAVIVKKICDLKQMHTQYGGVRPFGAALLMAGVN-DKPELYETDPSGAYFAWKAVAIGSGRNTAMAIFEDKYRDDMTLDEAIKLAIFAL 198          
The following BLAST results are available for this feature:
BLAST of FC868740 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
PSB9_MUSPL1.317e-1430.43Proteasome subunit beta type-9 OS=Mus platythrix G... [more]
PSB9_MUSSI1.720e-1430.43Proteasome subunit beta type-9 OS=Mus spicilegus G... [more]
PSB9_MUSDU1.720e-1430.43Proteasome subunit beta type-9 OS=Mus dunni GN=Psm... [more]
PSB9_MOUSE1.720e-1430.43Proteasome subunit beta type-9 OS=Mus musculus GN=... [more]
PSMB_METTH6.534e-1428.48Proteasome subunit beta OS=Methanobacterium thermo... [more]
PSB6_ENCCU3.243e-1327.88Probable proteasome subunit beta type-6 OS=Encepha... [more]
PSMA_METKA9.436e-1330.54Proteasome subunit alpha OS=Methanopyrus kandleri ... [more]
PSB5B_ARATH1.609e-1230.73Proteasome subunit beta type-5-B OS=Arabidopsis th... [more]
PSB5_SPIOL4.683e-1231.02Proteasome subunit beta type-5 OS=Spinacia olerace... [more]
PSMA_PYRAB6.116e-1231.14Proteasome subunit alpha OS=Pyrococcus abyssi GN=p... [more]

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Properties
Property NameValue
Genbank descriptionC31004C02EF AbioticL1 Citrus clementina cDNA clone C31004C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868740 ID=FC868740; Name=FC868740; organism=Citrus clementina; type=EST; length=721bp
TAAGACTCGAACTCGCTCGCTGTCGCTGCTGCTCTCCAAAGCTCACGCCT
TGTTTTCATTCCAGTGGGATCAATCTCAGGTTGAAGAAAGTTTAAAATGT
CAAACTCTGCAATAGATGTTCCTTCCAGGGGTGGATTTAGTTTTGATCTC
TGCCGGCGGAATGATATGCTTGCAAAGAAGGGTGTCAACCTTCCATCTTT
CCGAAAGACGGGGACGACCATTGTTGGGTTGATTTTCCAGGATGGCGTCA
TTCTTGGGGCAGATACCAGAGCAACTGAAGGACCCATAGTTTGCGATAAG
AATTGTGAGAAAATTCATTACATGGCTCCAAACATATATTGTTGTGGTGC
AGGAACTGCTGCTGACACAGAGGCTGTAACTGACATGGTCAGCTCACAGC
TGCAGTTACATCGTTATCATACTGGTAGAGAGTCAAGGGTTGTTACAGCA
CTGACTCTTCTCAAGAAGCACCTTTTCAACTACCAAGGTTATGTGTAAGC
TGCTTTGGTTCTTGGTGGAGTTGATTGCACTGGACCTCATCTTCACACAA
TATATCCACATGGTTCAACTGACACTTTACCATTTGCGAACATGGGTTCT
GGTTCTCTTGCTGCCATGGCTATGTTTGAATCAAAATACAAAGAAGGCCT
GACTAAAGATGAGGGAATACAGCTAGTTGTGGACGCCATTTGCTCTGGTA
TATTCATGACTTGGGAAGTGG
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