FC868743

Overview
NameFC868743
Unique NameFC868743
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868743 vs. ExPASy Swiss-Prot
Match: HGD_BURCM (Homogentisate 1,2-dioxygenase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=hmgA PE=3 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 9.379e-61
Identity = 115/202 (56.93%), Postives = 149/202 (73.76%), Query Frame = 2
Query:  104 YESGFGNSFSSEAIDGALPRG*NSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSATHEPFKPRVPAHGKLVSEFDKSNSY--TTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTTNKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFG 703
            Y SGF N F++EA+ GALP G NSP   P+GLYAEQ+SGT+FT+PR  N+RSWLYRI+P+A H PF+P      +LVSEF  S     T P QLRW P+ +P  PTDF++GL T+ G GS+   +G AIH+Y  N+SM +  F +ADG+ L+VPQ+GRL+IATE G+L+V P EIAV+P+G RF+V+LPDG +RGYI E FG
Sbjct:   13 YLSGFANEFATEALPGALPHGRNSPQRAPYGLYAEQLSGTAFTAPRGHNRRSWLYRIRPAAVHRPFEPFTGPQ-RLVSEFGDSADVPPTPPNQLRWDPLPMPVEPTDFVEGLVTMAGNGSAAAMNGCAIHLYAANRSMQDRFFYSADGELLIVPQQGRLFIATEFGRLDVEPFEIAVIPRGVRFSVALPDGDARGYICENFG 213          
BLAST of FC868743 vs. ExPASy Swiss-Prot
Match: HGD_DICDI (Homogentisate 1,2-dioxygenase OS=Dictyostelium discoideum GN=hgd PE=2 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 6.079e-60
Identity = 116/207 (56.04%), Postives = 146/207 (70.53%), Query Frame = 2
Query:   95 DLNYESGFGNSFSSEAIDGALPRG*NSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSATHEPFKPRVPAHGKLVSEFDKSNSYTTPTQLRWKPVDI-PDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTTNKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHF 712
            D  Y+SGFGNSF SEAI G LP+G N+P  CP  LYAEQ+SG +FT+PR   QRSWLYRI+PS  H P K   P    LV   D +N +  P QLRWKP  I  D P DF++GL TI GAG + +RHG AIH+YT  KSM+N +F N+DGDFL+VPQ+G L I TE G ++V  GEI V+ +G  F+V++ +GP+RGYI E+FG+HF
Sbjct:    7 DYEYQSGFGNSFESEAIKGTLPKGRNAPQNCPLDLYAEQLSGNAFTAPRHTQQRSWLYRIRPSVCHTPLK---PIDSGLVC--DLNNLHVDPNQLRWKPFPITEDKPHDFVEGLITIAGAGHASVRHGLAIHIYTATKSMENKSFYNSDGDFLIVPQQGTLDIQTEFGFMKVKSGEICVIQRGITFSVNV-EGPTRGYICEVFGSHF 207          
BLAST of FC868743 vs. ExPASy Swiss-Prot
Match: HGD_BURPS (Homogentisate 1,2-dioxygenase OS=Burkholderia pseudomallei GN=hmgA PE=3 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 3.017e-59
Identity = 114/211 (54.03%), Postives = 149/211 (70.62%), Query Frame = 2
Query:   86 DFS---DLNYESGFGNSFSSEAIDGALPRG*NSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSATHEPFKPRVPAHGKLVSEFDKSNSY--TTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTTNKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFG 703
            DFS   +  Y+SGF N F++EA+ GALP   NSP   P+GLYAEQ SGT+FT+PR  N+RSWLYRI+P+A H PF+  V    ++V+EF  S+    T P QLRW P+ +P  PTDF+DG  T+ G GS+    G AIH+Y  N+SM    F +ADG+ L+VPQ+GRL+I TE G+L+V P EIAV+P+G RFAV+LPDG +RGY+ E FG
Sbjct:   10 DFSKPGEAGYQSGFANEFATEALPGALPHARNSPQRAPYGLYAEQFSGTAFTAPRGHNRRSWLYRIRPAAVHRPFE-LVSGERRIVAEFGDSDDVPPTPPNQLRWDPLPMPAQPTDFVDGWVTMAGNGSAAAMSGCAIHLYAANRSMRERFFYSADGELLIVPQEGRLFIMTELGRLDVEPFEIAVIPRGVRFAVALPDGRARGYVCENFG 219          
BLAST of FC868743 vs. ExPASy Swiss-Prot
Match: HGD_BURP1 (Homogentisate 1,2-dioxygenase OS=Burkholderia pseudomallei (strain 1710b) GN=hmgA PE=3 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 3.017e-59
Identity = 114/211 (54.03%), Postives = 149/211 (70.62%), Query Frame = 2
Query:   86 DFS---DLNYESGFGNSFSSEAIDGALPRG*NSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSATHEPFKPRVPAHGKLVSEFDKSNSY--TTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTTNKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFG 703
            DFS   +  Y+SGF N F++EA+ GALP   NSP   P+GLYAEQ SGT+FT+PR  N+RSWLYRI+P+A H PF+  V    ++V+EF  S+    T P QLRW P+ +P  PTDF+DG  T+ G GS+    G AIH+Y  N+SM    F +ADG+ L+VPQ+GRL+I TE G+L+V P EIAV+P+G RFAV+LPDG +RGY+ E FG
Sbjct:   10 DFSKPGEAGYQSGFANEFATEALPGALPHARNSPQRAPYGLYAEQFSGTAFTAPRGHNRRSWLYRIRPAAVHRPFE-LVSGERRIVAEFGDSDDVPPTPPNQLRWDPLPMPAQPTDFVDGWVTMAGNGSAAAMSGCAIHLYAANRSMRERFFYSADGELLIVPQEGRLFIMTELGRLDVEPFEIAVIPRGVRFAVALPDGRARGYVCENFG 219          
BLAST of FC868743 vs. ExPASy Swiss-Prot
Match: HGD_BURP0 (Homogentisate 1,2-dioxygenase OS=Burkholderia pseudomallei (strain 1106a) GN=hmgA PE=3 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 3.017e-59
Identity = 114/211 (54.03%), Postives = 149/211 (70.62%), Query Frame = 2
Query:   86 DFS---DLNYESGFGNSFSSEAIDGALPRG*NSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSATHEPFKPRVPAHGKLVSEFDKSNSY--TTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTTNKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFG 703
            DFS   +  Y+SGF N F++EA+ GALP   NSP   P+GLYAEQ SGT+FT+PR  N+RSWLYRI+P+A H PF+  V    ++V+EF  S+    T P QLRW P+ +P  PTDF+DG  T+ G GS+    G AIH+Y  N+SM    F +ADG+ L+VPQ+GRL+I TE G+L+V P EIAV+P+G RFAV+LPDG +RGY+ E FG
Sbjct:   10 DFSKPGEAGYQSGFANEFATEALPGALPHARNSPQRAPYGLYAEQFSGTAFTAPRGHNRRSWLYRIRPAAVHRPFE-LVSGERRIVAEFGDSDDVPPTPPNQLRWDPLPMPAQPTDFVDGWVTMAGNGSAAAMSGCAIHLYAANRSMRERFFYSADGELLIVPQEGRLFIMTELGRLDVEPFEIAVIPRGVRFAVALPDGRARGYVCENFG 219          
BLAST of FC868743 vs. ExPASy Swiss-Prot
Match: HGD_BURMS (Homogentisate 1,2-dioxygenase OS=Burkholderia mallei (strain SAVP1) GN=hmgA PE=3 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 3.017e-59
Identity = 114/211 (54.03%), Postives = 149/211 (70.62%), Query Frame = 2
Query:   86 DFS---DLNYESGFGNSFSSEAIDGALPRG*NSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSATHEPFKPRVPAHGKLVSEFDKSNSY--TTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTTNKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFG 703
            DFS   +  Y+SGF N F++EA+ GALP   NSP   P+GLYAEQ SGT+FT+PR  N+RSWLYRI+P+A H PF+  V    ++V+EF  S+    T P QLRW P+ +P  PTDF+DG  T+ G GS+    G AIH+Y  N+SM    F +ADG+ L+VPQ+GRL+I TE G+L+V P EIAV+P+G RFAV+LPDG +RGY+ E FG
Sbjct:   10 DFSKPGEAGYQSGFANEFATEALPGALPHARNSPQRAPYGLYAEQFSGTAFTAPRGHNRRSWLYRIRPAAVHRPFE-LVSGERRIVAEFGDSDDVPPTPPNQLRWDPLPMPAQPTDFVDGWVTMAGNGSAAAMSGCAIHLYAANRSMRERFFYSADGELLIVPQEGRLFIMTELGRLDVEPFEIAVIPRGVRFAVALPDGRARGYVCENFG 219          
BLAST of FC868743 vs. ExPASy Swiss-Prot
Match: HGD_BURMA (Homogentisate 1,2-dioxygenase OS=Burkholderia mallei GN=hmgA PE=3 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 3.017e-59
Identity = 114/211 (54.03%), Postives = 149/211 (70.62%), Query Frame = 2
Query:   86 DFS---DLNYESGFGNSFSSEAIDGALPRG*NSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSATHEPFKPRVPAHGKLVSEFDKSNSY--TTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTTNKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFG 703
            DFS   +  Y+SGF N F++EA+ GALP   NSP   P+GLYAEQ SGT+FT+PR  N+RSWLYRI+P+A H PF+  V    ++V+EF  S+    T P QLRW P+ +P  PTDF+DG  T+ G GS+    G AIH+Y  N+SM    F +ADG+ L+VPQ+GRL+I TE G+L+V P EIAV+P+G RFAV+LPDG +RGY+ E FG
Sbjct:   10 DFSKPGEAGYQSGFANEFATEALPGALPHARNSPQRAPYGLYAEQFSGTAFTAPRGHNRRSWLYRIRPAAVHRPFE-LVSGERRIVAEFGDSDDVPPTPPNQLRWDPLPMPAQPTDFVDGWVTMAGNGSAAAMSGCAIHLYAANRSMRERFFYSADGELLIVPQEGRLFIMTELGRLDVEPFEIAVIPRGVRFAVALPDGRARGYVCENFG 219          
BLAST of FC868743 vs. ExPASy Swiss-Prot
Match: HGD_BURM9 (Homogentisate 1,2-dioxygenase OS=Burkholderia mallei (strain NCTC 10229) GN=hmgA PE=3 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 3.017e-59
Identity = 114/211 (54.03%), Postives = 149/211 (70.62%), Query Frame = 2
Query:   86 DFS---DLNYESGFGNSFSSEAIDGALPRG*NSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSATHEPFKPRVPAHGKLVSEFDKSNSY--TTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTTNKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFG 703
            DFS   +  Y+SGF N F++EA+ GALP   NSP   P+GLYAEQ SGT+FT+PR  N+RSWLYRI+P+A H PF+  V    ++V+EF  S+    T P QLRW P+ +P  PTDF+DG  T+ G GS+    G AIH+Y  N+SM    F +ADG+ L+VPQ+GRL+I TE G+L+V P EIAV+P+G RFAV+LPDG +RGY+ E FG
Sbjct:   10 DFSKPGEAGYQSGFANEFATEALPGALPHARNSPQRAPYGLYAEQFSGTAFTAPRGHNRRSWLYRIRPAAVHRPFE-LVSGERRIVAEFGDSDDVPPTPPNQLRWDPLPMPAQPTDFVDGWVTMAGNGSAAAMSGCAIHLYAANRSMRERFFYSADGELLIVPQEGRLFIMTELGRLDVEPFEIAVIPRGVRFAVALPDGRARGYVCENFG 219          
BLAST of FC868743 vs. ExPASy Swiss-Prot
Match: HGD_BURM7 (Homogentisate 1,2-dioxygenase OS=Burkholderia mallei (strain NCTC 10247) GN=hmgA PE=3 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 3.017e-59
Identity = 114/211 (54.03%), Postives = 149/211 (70.62%), Query Frame = 2
Query:   86 DFS---DLNYESGFGNSFSSEAIDGALPRG*NSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSATHEPFKPRVPAHGKLVSEFDKSNSY--TTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTTNKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFG 703
            DFS   +  Y+SGF N F++EA+ GALP   NSP   P+GLYAEQ SGT+FT+PR  N+RSWLYRI+P+A H PF+  V    ++V+EF  S+    T P QLRW P+ +P  PTDF+DG  T+ G GS+    G AIH+Y  N+SM    F +ADG+ L+VPQ+GRL+I TE G+L+V P EIAV+P+G RFAV+LPDG +RGY+ E FG
Sbjct:   10 DFSKPGEAGYQSGFANEFATEALPGALPHARNSPQRAPYGLYAEQFSGTAFTAPRGHNRRSWLYRIRPAAVHRPFE-LVSGERRIVAEFGDSDDVPPTPPNQLRWDPLPMPAQPTDFVDGWVTMAGNGSAAAMSGCAIHLYAANRSMRERFFYSADGELLIVPQEGRLFIMTELGRLDVEPFEIAVIPRGVRFAVALPDGRARGYVCENFG 219          
BLAST of FC868743 vs. ExPASy Swiss-Prot
Match: HGD_BURTA (Homogentisate 1,2-dioxygenase OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=hmgA PE=3 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 5.147e-59
Identity = 113/211 (53.55%), Postives = 149/211 (70.62%), Query Frame = 2
Query:   86 DFS---DLNYESGFGNSFSSEAIDGALPRG*NSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSATHEPFKPRVPAHGKLVSEFDKSNSY--TTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTTNKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFG 703
            DFS   +  Y+SGF N F++EA+ GALP   NSP   P+GLYAEQ+SGT+FT+PR  N+RSWLYRI+P+A H PF+  V    ++V++F  S     T P QLRW P+ +P  PTDF+DG  T+ G GS+    G AIH+Y  N+SM    F +ADG+ L+VPQ+GRL+I TE G+L+V P EIAV+P+G RFAV+LPDG +RGY+ E FG
Sbjct:   10 DFSKPGEAGYQSGFANEFATEALPGALPHARNSPQRAPYGLYAEQLSGTAFTAPRGHNRRSWLYRIRPAAVHRPFE-LVSGERRIVADFGDSGDVPPTPPNQLRWDPLPMPAQPTDFVDGWVTMAGNGSAAAMSGCAIHLYAANRSMRERFFYSADGELLIVPQEGRLFIMTELGRLDVEPFEIAVIPRGVRFAVALPDGRARGYVCENFG 219          
The following BLAST results are available for this feature:
BLAST of FC868743 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
HGD_BURCM9.379e-6156.93Homogentisate 1,2-dioxygenase OS=Burkholderia ambi... [more]
HGD_DICDI6.079e-6056.04Homogentisate 1,2-dioxygenase OS=Dictyostelium dis... [more]
HGD_BURPS3.017e-5954.03Homogentisate 1,2-dioxygenase OS=Burkholderia pseu... [more]
HGD_BURP13.017e-5954.03Homogentisate 1,2-dioxygenase OS=Burkholderia pseu... [more]
HGD_BURP03.017e-5954.03Homogentisate 1,2-dioxygenase OS=Burkholderia pseu... [more]
HGD_BURMS3.017e-5954.03Homogentisate 1,2-dioxygenase OS=Burkholderia mall... [more]
HGD_BURMA3.017e-5954.03Homogentisate 1,2-dioxygenase OS=Burkholderia mall... [more]
HGD_BURM93.017e-5954.03Homogentisate 1,2-dioxygenase OS=Burkholderia mall... [more]
HGD_BURM73.017e-5954.03Homogentisate 1,2-dioxygenase OS=Burkholderia mall... [more]
HGD_BURTA5.147e-5953.55Homogentisate 1,2-dioxygenase OS=Burkholderia thai... [more]

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Properties
Property NameValue
Genbank descriptionC31004C05EF AbioticL1 Citrus clementina cDNA clone C31004C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868743 ID=FC868743; Name=FC868743; organism=Citrus clementina; type=EST; length=724bp
AGGATTGTTAGTGATCTGCTGAGACCAAATGGAGAAGAAGAGTCAACATC
AATCATCATCATTAATCAGAAAATCGCACGGCGAAGATTTCTCTGATCTG
AATTACGAGTCAGGATTCGGCAACAGCTTCTCGTCGGAGGCGATCGACGG
TGCGTTGCCACGTGGATAGAACAGCCCCCTCGTTTGTCCGTTCGGTCTCT
ACGCCGAACAGATCTCCGGCACCTCCTTCACCTCCCCTCGCAAGCTCAAT
CAACGCAGTTGGTTATACAGAATAAAACCTTCTGCAACACATGAACCGTT
TAAGCCTCGAGTGCCTGCTCATGGGAAGCTGGTGAGTGAATTTGACAAGT
CTAACAGTTACACTACGCCGACTCAGCTCCGGTGGAAGCCGGTTGATATC
CCTGATTCACCGACTGATTTTATTGACGGGTTGTACACGATATGTGGGGC
TGGCAGCTCATTTCTTCGGCATGGATATGCTATTCACATGTACACTACCA
ACAAATCAATGGACAACTGTGCCTTCTGTAATGCTGATGGAGATTTTTTG
GTAGTTCCCCAAAAAGGAAGGCTGTGGATTGCTACTGAATGTGGAAAACT
GGAAGTCTCTCCTGGTGAAATTGCCGTTTTACCTCAAGGGTTTCGTTTTG
CTGTAAGTTTACCAGATGGTCCATCACGTGGTTACATCGCAGAGATTTTT
GGTACCCATTTCAGCTTCCTGATC
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