FC868743

Overview
NameFC868743
Unique NameFC868743
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868743 vs. ExPASy Swiss-Prot
Match: HGD_XANOP (Homogentisate 1,2-dioxygenase OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=hmgA PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.149e-50
Identity = 100/201 (49.75%), Postives = 133/201 (66.17%), Query Frame = 2
Query:  101 NYESGFGNSFSSEAIDGALPRG*NSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSATHEPFKPRVPAHGKLVSEFDKSNSYTTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTTNKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFG 703
            +Y +GFGN F++EA+ G+LP G NSP     GLYAEQ+SGT+FT+PR  N+RSWLYRI+P+A H  F   +    +L ++F        P Q+RW P+ +P +PTDF+DGLYT+ G GS     G A+H+Y  N SM    F NADG+ L+VPQ GRL + TE G LE+ P +I V+P+G RF V L D  +RGY+ E FG
Sbjct:    6 HYMTGFGNEFATEAVAGSLPVGQNSPQRVAHGLYAEQLSGTAFTAPRGENRRSWLYRIRPAAVHGRFS--LIEQSRLHNDF--GGGPVPPDQMRWSPLPLPATPTDFVDGLYTMAGNGSPEAMTGVAVHLYAANASMHGRFFYNADGELLLVPQLGRLRVCTELGVLELEPQQIGVIPRGVRFRVELLDSAARGYVCENFG 202          
BLAST of FC868743 vs. ExPASy Swiss-Prot
Match: HGD_XANOM (Homogentisate 1,2-dioxygenase OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=hmgA PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.149e-50
Identity = 100/201 (49.75%), Postives = 133/201 (66.17%), Query Frame = 2
Query:  101 NYESGFGNSFSSEAIDGALPRG*NSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSATHEPFKPRVPAHGKLVSEFDKSNSYTTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTTNKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFG 703
            +Y +GFGN F++EA+ G+LP G NSP     GLYAEQ+SGT+FT+PR  N+RSWLYRI+P+A H  F   +    +L ++F        P Q+RW P+ +P +PTDF+DGLYT+ G GS     G A+H+Y  N SM    F NADG+ L+VPQ GRL + TE G LE+ P +I V+P+G RF V L D  +RGY+ E FG
Sbjct:    6 HYMTGFGNEFATEAVAGSLPVGQNSPQRVAHGLYAEQLSGTAFTAPRGENRRSWLYRIRPAAVHGRFS--LIEQSRLHNDF--GGGPVPPDQMRWSPLPLPATPTDFVDGLYTMAGNGSPEAMTGVAVHLYAANASMHGRFFYNADGELLLVPQLGRLRVCTELGVLELEPQQIGVIPRGVRFRVELLDSAARGYVCENFG 202          
BLAST of FC868743 vs. ExPASy Swiss-Prot
Match: HGD_XANOR (Homogentisate 1,2-dioxygenase OS=Xanthomonas oryzae pv. oryzae GN=hmgA PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.501e-50
Identity = 99/201 (49.25%), Postives = 133/201 (66.17%), Query Frame = 2
Query:  101 NYESGFGNSFSSEAIDGALPRG*NSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSATHEPFKPRVPAHGKLVSEFDKSNSYTTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTTNKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFG 703
            +Y +GFGN F++EA+ G+LP G NSP     GLYAEQ+SGT+FT+PR  N+RSWLYRI+P+A H  F   +    +L ++F        P Q+RW P+ +P +PTDF+DGLYT+ G GS     G A+H+Y  N SM    F NADG+ L+VPQ GRL + TE G LE+ P ++ V+P+G RF V L D  +RGY+ E FG
Sbjct:    6 HYMTGFGNEFATEAVAGSLPVGQNSPQRVAHGLYAEQLSGTAFTAPRGENRRSWLYRIRPAAVHGRFS--LIEQSRLHNDF--GGGPVPPDQMRWSPLPLPATPTDFVDGLYTMAGNGSPEAMTGVAVHLYAANASMHGRFFYNADGELLLVPQLGRLRVCTELGVLELEPQQVGVIPRGVRFRVELLDSAARGYVCENFG 202          
BLAST of FC868743 vs. ExPASy Swiss-Prot
Match: HGD_XANC5 (Homogentisate 1,2-dioxygenase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=hmgA PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 9.729e-50
Identity = 99/201 (49.25%), Postives = 133/201 (66.17%), Query Frame = 2
Query:  101 NYESGFGNSFSSEAIDGALPRG*NSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSATHEPFKPRVPAHGKLVSEFDKSNSYTTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTTNKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFG 703
            +Y +GFGN F++EA+ G+LP G NSP     GLYAEQ+SGT+FT+PR  N+RSWLYRI+P+A H  F   +    +L ++F        P Q+RW P+ +P + TDF+DGLYT+ G GS     G A+H+Y  N SM +  F NADG+ L+VPQ GRL + TE G LE+ P +I V+P+G RF V L D  +RGY+ E FG
Sbjct:    8 SYMTGFGNEFATEAVAGSLPVGQNSPQRVAHGLYAEQLSGTAFTAPRGENRRSWLYRIRPAAVHGRFS--LIEQSRLHNDF--GGGPVPPDQMRWSPLPLPATRTDFVDGLYTMAGNGSPEAMTGVAVHLYAANASMRDRFFYNADGELLLVPQLGRLRVCTELGVLELEPQQIGVIPRGLRFRVELLDSEARGYVCENFG 204          
BLAST of FC868743 vs. ExPASy Swiss-Prot
Match: HGD_XANAC (Homogentisate 1,2-dioxygenase OS=Xanthomonas axonopodis pv. citri GN=hmgA PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.659e-49
Identity = 98/204 (48.04%), Postives = 129/204 (63.24%), Query Frame = 2
Query:   92 SDLNYESGFGNSFSSEAIDGALPRG*NSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSATHEPFKPRVPAHGKLVSEFDKSNSYTTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTTNKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFG 703
            +D  Y +GFGN F++EA+ G+LP G NSP     GLYAEQ+SGT+FT+PR  N+RSWLYRI+P+A H  F     +H       D       P QLRW P+ +P  PTDF+DGLYT+ G G      G  +H+Y  N SM +  F +ADG+ L+VPQ+GRL + TE G L + P +I V+P+G RF V L D  +RGY+ E FG
Sbjct:   24 NDQRYMTGFGNEFATEAVAGSLPIGQNSPQRVAHGLYAEQLSGTAFTAPRGQNRRSWLYRIRPAAVHGSFSLVEQSH----FHNDFGAGPVPPDQLRWSPLPLPSVPTDFVDGLYTMAGNGGPEAMSGVGVHVYAANASMQDRFFYDADGELLLVPQQGRLRVHTELGVLALEPQQIGVIPRGMRFRVELLDAAARGYVCENFG 223          
BLAST of FC868743 vs. ExPASy Swiss-Prot
Match: HGD_PSEPW (Homogentisate 1,2-dioxygenase OS=Pseudomonas putida (strain W619) GN=hmgA PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.659e-49
Identity = 104/205 (50.73%), Postives = 134/205 (65.37%), Query Frame = 2
Query:   95 DLNYESGFGNSFSSEAIDGALPRG*NSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSATHEPFK--PRVPAHGKLVSEFDKSNSYTTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTTNKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFG 703
            DL Y SGFGN F+SEA+ GALP G NSP   P+GLYAE +SGT+FT  R   +R+WLYRI+PSA H  F+   R P +G L           TP +LRW P  +P  PTDFI+G   +    ++    G ++++Y  N+SM+   F NADG+ L+VP++GRL IATE G LEV P EIAV+P+G +F V LPDG +RGYIAE  G
Sbjct:    8 DLQYLSGFGNEFASEALPGALPVGQNSPQKAPYGLYAELLSGTAFTMARSELRRTWLYRIRPSALHPRFERLARQPLNGPL--------GGVTPNRLRWNPQPLPTEPTDFIEGWLPMVANSAADKPAGVSVYIYCANRSMER-VFFNADGELLIVPEQGRLRIATELGLLEVEPQEIAVVPRGMKFRVELPDGQARGYIAENHG 203          
BLAST of FC868743 vs. ExPASy Swiss-Prot
Match: HGD_PSEAE (Homogentisate 1,2-dioxygenase OS=Pseudomonas aeruginosa GN=hmgA PE=3 SV=2)

HSP 1 Score: 192.971 bits (489), Expect = 1.405e-48
Identity = 104/208 (50.00%), Postives = 133/208 (63.94%), Query Frame = 2
Query:   86 DFSDLNYESGFGNSFSSEAIDGALPRG*NSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSATHEPFK--PRVPAHGKLVSEFDKSNSYTTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTTNKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFG 703
            D + L Y+SGFGN FSSEA+ GALP G NSP   P+GLYAE +SGT+FT  R   +R+WLYRI PSA H PF+   R  A  +L           TP +LRW P+ +P+ PTDF+DGL  +          G +I+ Y  N+SM+ C F +ADG+ L+VPQ GRL + TE G L+V P EIAV+P+G +F V L DG +RGYIAE  G
Sbjct:    4 DSTALAYQSGFGNEFSSEALPGALPVGQNSPQKAPYGLYAELLSGTAFTMARSEARRTWLYRITPSAKHPPFRRLERQIAGAEL--------DAPTPNRLRWDPLALPEQPTDFLDGLLRMAANAPGDKPAGVSIYQYLANRSMERC-FYDADGELLLVPQLGRLRLCTELGALQVEPLEIAVIPRGMKFRVELLDGEARGYIAENHG 202          
BLAST of FC868743 vs. ExPASy Swiss-Prot
Match: HGD_PSEAB (Homogentisate 1,2-dioxygenase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=hmgA PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.405e-48
Identity = 104/208 (50.00%), Postives = 133/208 (63.94%), Query Frame = 2
Query:   86 DFSDLNYESGFGNSFSSEAIDGALPRG*NSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSATHEPFK--PRVPAHGKLVSEFDKSNSYTTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTTNKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFG 703
            D + L Y+SGFGN FSSEA+ GALP G NSP   P+GLYAE +SGT+FT  R   +R+WLYRI PSA H PF+   R  A  +L           TP +LRW P+ +P+ PTDF+DGL  +          G +I+ Y  N+SM+ C F +ADG+ L+VPQ GRL + TE G L+V P EIAV+P+G +F V L DG +RGYIAE  G
Sbjct:    4 DSTALAYQSGFGNEFSSEALPGALPVGQNSPQKAPYGLYAELLSGTAFTMARSEARRTWLYRITPSAKHPPFRRLERQIAGAEL--------DAPTPNRLRWDPLALPEQPTDFLDGLLRMAANAPGDKPAGVSIYQYLANRSMERC-FYDADGELLLVPQLGRLRLCTELGALQVEPLEIAVIPRGMKFRVELLDGEARGYIAENHG 202          
BLAST of FC868743 vs. ExPASy Swiss-Prot
Match: HGD_PSEA8 (Homogentisate 1,2-dioxygenase OS=Pseudomonas aeruginosa (strain LESB58) GN=hmgA PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.405e-48
Identity = 104/208 (50.00%), Postives = 133/208 (63.94%), Query Frame = 2
Query:   86 DFSDLNYESGFGNSFSSEAIDGALPRG*NSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSATHEPFK--PRVPAHGKLVSEFDKSNSYTTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTTNKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFG 703
            D + L Y+SGFGN FSSEA+ GALP G NSP   P+GLYAE +SGT+FT  R   +R+WLYRI PSA H PF+   R  A  +L           TP +LRW P+ +P+ PTDF+DGL  +          G +I+ Y  N+SM+ C F +ADG+ L+VPQ GRL + TE G L+V P EIAV+P+G +F V L DG +RGYIAE  G
Sbjct:    4 DSTALAYQSGFGNEFSSEALPGALPVGQNSPQKAPYGLYAELLSGTAFTMARSEARRTWLYRITPSAKHPPFRRLERQIAGAEL--------DAPTPNRLRWDPLALPEQPTDFLDGLLRMAANAPGDKPAGVSIYQYLANRSMERC-FYDADGELLLVPQLGRLRLCTELGALQVEPLEIAVIPRGMKFRVELLDGEARGYIAENHG 202          
BLAST of FC868743 vs. ExPASy Swiss-Prot
Match: HGD_PSEA7 (Homogentisate 1,2-dioxygenase OS=Pseudomonas aeruginosa (strain PA7) GN=hmgA PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.405e-48
Identity = 104/208 (50.00%), Postives = 133/208 (63.94%), Query Frame = 2
Query:   86 DFSDLNYESGFGNSFSSEAIDGALPRG*NSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSATHEPFK--PRVPAHGKLVSEFDKSNSYTTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTTNKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFG 703
            D + L Y+SGFGN FSSEA+ GALP G NSP   P+GLYAE +SGT+FT  R   +R+WLYRI PSA H PF+   R  A  +L           TP +LRW P+ +P+ PTDF+DGL  +          G +I+ Y  N+SM+ C F +ADG+ L+VPQ GRL + TE G L+V P EIAV+P+G +F V L DG +RGYIAE  G
Sbjct:    4 DSTALAYQSGFGNEFSSEALPGALPVGQNSPQKAPYGLYAELLSGTAFTMARSEARRTWLYRITPSAKHPPFRRLERQIAGAEL--------DAPTPNRLRWDPLALPEQPTDFLDGLLRMAANAPGDKPAGVSIYQYLANRSMERC-FYDADGELLLVPQLGRLRLCTELGALQVEPLEIAVIPRGMKFRVELLDGEARGYIAENHG 202          
The following BLAST results are available for this feature:
BLAST of FC868743 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
HGD_XANOP1.149e-5049.75Homogentisate 1,2-dioxygenase OS=Xanthomonas oryza... [more]
HGD_XANOM1.149e-5049.75Homogentisate 1,2-dioxygenase OS=Xanthomonas oryza... [more]
HGD_XANOR1.501e-5049.25Homogentisate 1,2-dioxygenase OS=Xanthomonas oryza... [more]
HGD_XANC59.729e-5049.25Homogentisate 1,2-dioxygenase OS=Xanthomonas campe... [more]
HGD_XANAC1.659e-4948.04Homogentisate 1,2-dioxygenase OS=Xanthomonas axono... [more]
HGD_PSEPW1.659e-4950.73Homogentisate 1,2-dioxygenase OS=Pseudomonas putid... [more]
HGD_PSEAE1.405e-4850.00Homogentisate 1,2-dioxygenase OS=Pseudomonas aerug... [more]
HGD_PSEAB1.405e-4850.00Homogentisate 1,2-dioxygenase OS=Pseudomonas aerug... [more]
HGD_PSEA81.405e-4850.00Homogentisate 1,2-dioxygenase OS=Pseudomonas aerug... [more]
HGD_PSEA71.405e-4850.00Homogentisate 1,2-dioxygenase OS=Pseudomonas aerug... [more]

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Properties
Property NameValue
Genbank descriptionC31004C05EF AbioticL1 Citrus clementina cDNA clone C31004C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868743 ID=FC868743; Name=FC868743; organism=Citrus clementina; type=EST; length=724bp
AGGATTGTTAGTGATCTGCTGAGACCAAATGGAGAAGAAGAGTCAACATC
AATCATCATCATTAATCAGAAAATCGCACGGCGAAGATTTCTCTGATCTG
AATTACGAGTCAGGATTCGGCAACAGCTTCTCGTCGGAGGCGATCGACGG
TGCGTTGCCACGTGGATAGAACAGCCCCCTCGTTTGTCCGTTCGGTCTCT
ACGCCGAACAGATCTCCGGCACCTCCTTCACCTCCCCTCGCAAGCTCAAT
CAACGCAGTTGGTTATACAGAATAAAACCTTCTGCAACACATGAACCGTT
TAAGCCTCGAGTGCCTGCTCATGGGAAGCTGGTGAGTGAATTTGACAAGT
CTAACAGTTACACTACGCCGACTCAGCTCCGGTGGAAGCCGGTTGATATC
CCTGATTCACCGACTGATTTTATTGACGGGTTGTACACGATATGTGGGGC
TGGCAGCTCATTTCTTCGGCATGGATATGCTATTCACATGTACACTACCA
ACAAATCAATGGACAACTGTGCCTTCTGTAATGCTGATGGAGATTTTTTG
GTAGTTCCCCAAAAAGGAAGGCTGTGGATTGCTACTGAATGTGGAAAACT
GGAAGTCTCTCCTGGTGAAATTGCCGTTTTACCTCAAGGGTTTCGTTTTG
CTGTAAGTTTACCAGATGGTCCATCACGTGGTTACATCGCAGAGATTTTT
GGTACCCATTTCAGCTTCCTGATC
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