FC868744

Overview
NameFC868744
Unique NameFC868744
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length436
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868744 vs. ExPASy Swiss-Prot
Match: G3P_RAT (Glyceraldehyde-3-phosphate dehydrogenase OS=Rattus norvegicus GN=Gapdh PE=1 SV=3)

HSP 1 Score: 144.436 bits (363), Expect = 1.826e-34
Identity = 71/139 (51.08%), Postives = 95/139 (68.35%), Query Frame = 3
Query:    9 IKIGISGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEY 425
            +K+G++GFGRIGRLV R A   D V++VA+NDPFI  +YM YMF+YDS HG++ +  +K ++ K ++ G KP+ +F  R+P  I W   GAEYVVESTGVFT               V+ISAPS DAPMFV+GVN ++Y
Sbjct:    2 VKVGVNGFGRIGRLVTRAAFSCDKVDIVAINDPFIDLNYMVYMFQYDSTHGKF-NGTVKAENGKLVING-KPITIFQERDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHEKY 138          
BLAST of FC868744 vs. ExPASy Swiss-Prot
Match: G3P_PICCI (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia ciferrii GN=GPD PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.826e-34
Identity = 71/142 (50.00%), Postives = 97/142 (68.31%), Query Frame = 3
Query:    9 IKIGISGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 434
            I +GI+GFGRIGRLV R+AL R D+++VA+NDPFI+ +Y +YMFKYDS HG++   E+  + E  ++ G+K + V+  R+P  IPW K G +YV++STGVF                VVI+APS  APMFVVGVNE +Y P+
Sbjct:    3 ITVGINGFGRIGRLVLRIALSRKDIQIVAINDPFIAPEYASYMFKYDSTHGRYS-GEVSHEGENIVIDGKK-IRVYQERDPVNIPWGKDGVDYVIDSTGVFKELDSAQKHIDAGAKKVVITAPSSTAPMFVVGVNEDKYTPD 142          
BLAST of FC868744 vs. ExPASy Swiss-Prot
Match: G3P_MOUSE (Glyceraldehyde-3-phosphate dehydrogenase OS=Mus musculus GN=Gapdh PE=1 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 2.385e-34
Identity = 71/139 (51.08%), Postives = 96/139 (69.06%), Query Frame = 3
Query:    9 IKIGISGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEY 425
            +K+G++GFGRIGRLV R A+    VE+VA+NDPFI  +YM YMF+YDS HG++ +  +K ++ K ++ G KP+ +F  R+P  I W + GAEYVVESTGVFT               V+ISAPS DAPMFV+GVN ++Y
Sbjct:    2 VKVGVNGFGRIGRLVTRAAICSGKVEIVAINDPFIDLNYMVYMFQYDSTHGKF-NGTVKAENGKLVING-KPITIFQERDPTNIKWGEAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHEKY 138          
BLAST of FC868744 vs. ExPASy Swiss-Prot
Match: G3P_HOMAM (Glyceraldehyde-3-phosphate dehydrogenase OS=Homarus americanus PE=1 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 2.385e-34
Identity = 78/141 (55.32%), Postives = 96/141 (68.09%), Query Frame = 3
Query:   12 KIGISGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 434
            KIGI+GFGRIGRLV R AL     ++VAVNDPFI+ +YM YMFKYDS HG +K  E+K++D   ++ G+K + VF    PE IPW+K GAEY+VESTGVFT               VVISAPS DAPMFV GVN ++Y  +
Sbjct:    2 KIGINGFGRIGRLVLRAALSCG-AQVVAVNDPFIALEYMVYMFKYDSTHGVFK-GEVKMEDGALVVDGKK-ITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVVISAPSADAPMFVCGVNLEKYSKD 139          
BLAST of FC868744 vs. ExPASy Swiss-Prot
Match: G3P_BRUMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Brugia malayi GN=G3PD PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.385e-34
Identity = 75/143 (52.45%), Postives = 95/143 (66.43%), Query Frame = 3
Query:    6 KIKIGISGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKP---VAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEY 425
            K K+GI+GFGRIGRLV R A+++D V++VAVNDPFI+ DYM YMFKYDS HG++K   +  +  K ++   K    ++V   ++P EIPW   GAEYVVESTGVFT               V+ISAPS DAPMFV+GVN   Y
Sbjct:    3 KPKVGINGFGRIGRLVLRAAVEKDTVDVVAVNDPFINIDYMVYMFKYDSTHGRFK-GSVSAEGGKLIVTNGKTTHHISVHNSKDPAEIPWGVDGAEYVVESTGVFTTTDKASAHLKGGAKKVIISAPSADAPMFVMGVNNDMY 144          
BLAST of FC868744 vs. ExPASy Swiss-Prot
Match: G3P1_KLULA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluyveromyces lactis GN=GAP1 PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.385e-34
Identity = 74/142 (52.11%), Postives = 94/142 (66.20%), Query Frame = 3
Query:    9 IKIGISGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 434
            +K+ I+GFGRIGRLV R+ALQR  +E+VAVNDPFIS DY  YMFKYDS HG++K  E+       ++ G K +AVF  ++P  +PW K G + V++STGVF                VVI+APSK APMFVVGVNE +Y  E
Sbjct:    2 VKVAINGFGRIGRLVLRIALQRKALEVVAVNDPFISVDYAAYMFKYDSTHGRYK-GEVTTSGNDLVIDGHK-IAVFQEKDPANLPWGKLGVDIVIDSTGVFKELDSAQKHLDAGAKKVVITAPSKTAPMFVVGVNEDKYNGE 141          
BLAST of FC868744 vs. ExPASy Swiss-Prot
Match: G3P_CURLU (Glyceraldehyde-3-phosphate dehydrogenase OS=Curvularia lunata GN=GPD PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 3.115e-34
Identity = 76/142 (53.52%), Postives = 94/142 (66.20%), Query Frame = 3
Query:    9 IKIGISGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 434
            +K+GI+GFGRIGR+V R A++ +DVE+VAVNDPFI   Y  YM KYDS HGQ+K  ++KV D   L    K V     ++P  IPW++TGA YVVESTGVFT               VVISAPS DAPMFV+GVN + YK +
Sbjct:    3 VKVGINGFGRIGRIVFRNAIEHNDVEIVAVNDPFIEPHYAAYMLKYDSTHGQFK-GDIKV-DGNNLTVNGKTVRFHMEKDPANIPWSETGAYYVVESTGVFTTTEKAKAHLKGGAKKVVISAPSADAPMFVMGVNHETYKSD 142          
BLAST of FC868744 vs. ExPASy Swiss-Prot
Match: G3P_COCIM (Glyceraldehyde-3-phosphate dehydrogenase OS=Coccidioides immitis GN=GPD PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 3.115e-34
Identity = 74/142 (52.11%), Postives = 96/142 (67.61%), Query Frame = 3
Query:    9 IKIGISGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 434
            +K+GI+GFGRIGR+V R A++  +VE+VAVNDPFI T Y  YM KYDS HG++K  ++K  D    + G K V  +  R+P  IPWA+TGA+YV+ESTGVFT               V+ISAPS DAPMFV+GVN + YK +
Sbjct:    3 VKVGINGFGRIGRIVFRNAVEHPEVEIVAVNDPFIETHYAAYMLKYDSTHGRFK-GDVKFSDNGLDVDG-KHVRFYQERDPANIPWAETGADYVIESTGVFTTTEKASAHLKGGAKKVIISAPSADAPMFVMGVNNETYKSD 142          
BLAST of FC868744 vs. ExPASy Swiss-Prot
Match: G3P1_GLORO (Glyceraldehyde-3-phosphate dehydrogenase 1 (Fragment) OS=Globodera rostochiensis GN=GPD-1 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 3.115e-34
Identity = 75/148 (50.68%), Postives = 94/148 (63.51%), Query Frame = 3
Query:    6 KIKIGISGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEK------PVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKP 431
            K K+GI+GFGRIGRL  R A+++D V++VA+NDPFI  DYM YMF YDS HG++     K+      L  EK       + VF  ++P EI WA+ GAEYV+ESTGVFT               VVISAPS DAPM+V+GVNE +Y P
Sbjct:    3 KPKVGINGFGRIGRLALRAAVEKDTVQVVAINDPFIELDYMVYMFNYDSTHGRFNG---KISTSAGNLVVEKEGKATHTIKVFNLKDPAEIKWAEVGAEYVIESTGVFTTIEKASAHLKGGAKKVVISAPSADAPMYVMGVNEDKYDP 147          
BLAST of FC868744 vs. ExPASy Swiss-Prot
Match: G3P_COLLN (Glyceraldehyde-3-phosphate dehydrogenase OS=Colletotrichum lindemuthianum GN=GPDA PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 5.313e-34
Identity = 75/139 (53.96%), Postives = 91/139 (65.47%), Query Frame = 3
Query:    9 IKIGISGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEY 425
            IK+GI+GFGRIGR+V R A++  DVE+VAVNDPFI T Y  YM KYDS HG +  N    +D   L+   K V  +  R+P  IPW +TGA+YVVESTGVFT               V+ISAPS DAPM+V+GVNEK Y
Sbjct:    4 IKVGINGFGRIGRIVFRNAVEHPDVEIVAVNDPFIETKYAAYMLKYDSTHGIF--NGEIAQDGNDLVINGKKVKFYTERDPAVIPWKETGADYVVESTGVFTTIDKAKAHLQGGAKKVIISAPSADAPMYVMGVNEKSY 140          
The following BLAST results are available for this feature:
BLAST of FC868744 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 249
Match NameE-valueIdentityDescription
G3P_RAT1.826e-3451.08Glyceraldehyde-3-phosphate dehydrogenase OS=Rattus... [more]
G3P_PICCI1.826e-3450.00Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]
G3P_MOUSE2.385e-3451.08Glyceraldehyde-3-phosphate dehydrogenase OS=Mus mu... [more]
G3P_HOMAM2.385e-3455.32Glyceraldehyde-3-phosphate dehydrogenase OS=Homaru... [more]
G3P_BRUMA2.385e-3452.45Glyceraldehyde-3-phosphate dehydrogenase OS=Brugia... [more]
G3P1_KLULA2.385e-3452.11Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluy... [more]
G3P_CURLU3.115e-3453.52Glyceraldehyde-3-phosphate dehydrogenase OS=Curvul... [more]
G3P_COCIM3.115e-3452.11Glyceraldehyde-3-phosphate dehydrogenase OS=Coccid... [more]
G3P1_GLORO3.115e-3450.68Glyceraldehyde-3-phosphate dehydrogenase 1 (Fragme... [more]
G3P_COLLN5.313e-3453.96Glyceraldehyde-3-phosphate dehydrogenase OS=Collet... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31004C06EF AbioticL1 Citrus clementina cDNA clone C31004C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868744 ID=FC868744; Name=FC868744; organism=Citrus clementina; type=EST; length=436bp
GCAAGAAGATTAAGATCGGAATCTCCGGTTTCGGAAGGATCGGCCGTTTG
GTTGCGAGAGTCGCACTCCAGAGGGATGATGTGGAGCTGGTGGCTGTCAA
CGATCCTTTCATCTCCACTGATTACATGACATACATGTTTAAGTACGATA
GTGTTCACGGTCAGTGGAAGCACAACGAGTTGAAGGTCAAGGACGAGAAG
ACCCTCCTCTTCGGTGAGAAGCCAGTCGCTGTTTTCGGATTCAGGAACCC
AGAGGAGATCCCATGGGCAAAGACTGGAGCCGAGTATGTTGTGGAATCAA
CTGGAGTGTTCACTGACAAGGACAAGGCTGCTGCTCACTTGAAGGGTGGT
GCCAAGAAGGTCGTTATCTCCGCCCCTAGCAAGGATGCTCCCATGTTTGT
TGTGGGCGTCAACGAGAAAGAATACAAGCCAGAGCT
back to top