FC868750

Overview
NameFC868750
Unique NameFC868750
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length727
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15311 contig Ccv1_Contig15311:6..733. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868750 vs. ExPASy Swiss-Prot
Match: CHMP3_XENTR (Charged multivesicular body protein 3 OS=Xenopus tropicalis GN=vps24 PE=2 SV=3)

HSP 1 Score: 143.665 bits (361), Expect = 9.774e-34
Identity = 69/157 (43.95%), Postives = 105/157 (66.88%), Query Frame = 3
Query:  216 PQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKV 686
            P+ L+ +W  K+R+E R I+RQIRDIQRE++ V+++IK++AK+ +  +   LA+E+V S+K VN+LY +KA MNS+ M +   +A+ R  G L KS EVMK + NL+K PE+ ATM++ SKEM KAG+IEE + D  +   D           +D++
Sbjct:   12 PKDLVNEWSLKIRKEMRLIDRQIRDIQREQEKVKRSIKESAKKGNREACVILAKEVVHSKKAVNKLYASKAHMNSVLMSMKNQLAVLRVSGSLQKSTEVMKAMQNLVKIPEIQATMRDLSKEMMKAGIIEEMLEDTFEGMEDQDEMEEQAEMEIDRI 168          
BLAST of FC868750 vs. ExPASy Swiss-Prot
Match: CHMP3_DICDI (Charged multivesicular body protein 3 OS=Dictyostelium discoideum GN=chmp3 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.363e-32
Identity = 64/141 (45.39%), Postives = 97/141 (68.79%), Query Frame = 3
Query:  207 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVD 629
            KP P++L++ W+R+LR+E R ++ Q+R I  +EK   + IK+  K  D  SAK+LA+E+V SRK   R+Y  KAQMNS+SM L  ++A+ +  G+L KS E+MK++N+L+K PE+   M     EMTKAG++EE ++D  D
Sbjct:    7 KPTPEELVKKWKRELRREDRGLDTQLRAIDMQEKKTVRMIKERVKAGDQKSAKTLAKEIVNSRKAKERIYTAKAQMNSVSMQLQSNLAMTKVQGNLAKSTEIMKMMNDLIKLPELNKVMMAMGSEMTKAGIMEEMISDVFD 147          
BLAST of FC868750 vs. ExPASy Swiss-Prot
Match: VPS24_SCHPO (Vacuolar protein sorting-associated protein 24 OS=Schizosaccharomyces pombe GN=vps24 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.239e-20
Identity = 46/133 (34.59%), Postives = 88/133 (66.17%), Query Frame = 3
Query:  210 PNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEE 608
            P PQ+  R WQ  +R+E R ++RQ+  ++   K  +  +K  AK++D+++ + LA+E+ R+ +   RL E+KA + S+S+ L + +A+ +  G +  S ++M+ V++L++ P+++ TM+  S E+TKAGV+EE
Sbjct:   11 PTPQEQNRKWQSIIRKEQRQLDRQVYHLKAGRKKAEVQLKQLAKQSDITNMRILAKEIARANRHGKRLAESKALLGSLSLQLNDQMAMLKIQGTMQSSTKIMQDVSSLIRLPQLSETMRNLSMELTKAGVLEE 143          
BLAST of FC868750 vs. ExPASy Swiss-Prot
Match: VPS24_YEAST (Vacuolar protein-sorting-associated protein 24 OS=Saccharomyces cerevisiae GN=VPS24 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.049e-19
Identity = 47/144 (32.64%), Postives = 91/144 (63.19%), Query Frame = 3
Query:  210 PNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALD 641
            P+P++  R  +  LR+  RNIE+ +R++   +   Q+ IK +AK+ND+ + +  A+EL +  K  +R+Y ++AQ++S+ M + E++ +      +  SA +M+ VN+L++ P++  TM E  KE+ K+G+I E V+D +++  D
Sbjct:   11 PDPKEQQRRIRSVLRKNGRNIEKSLRELTVLQNKTQQLIKKSAKKNDVRTVRLYAKELYQINKQYDRMYTSRAQLDSVRMKIDEAIRMNTLSNQMADSAGLMREVNSLVRLPQLRNTMIELEKELMKSGIISEMVDDTMESVGD 154          
BLAST of FC868750 vs. ExPASy Swiss-Prot
Match: VPS2C_ARATH (Vacuolar protein sorting-associated protein 2 homolog 3 OS=Arabidopsis thaliana GN=VPS2.3 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.789e-19
Identity = 54/178 (30.34%), Postives = 95/178 (53.37%), Query Frame = 3
Query:  189 MNMIKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVXDCIAGETAAQL 722
            MN+   KPNP+++LR+ +R++ Q  R IE++I  +Q EEK +   IK  AK  +  + K LA++L+R R+ +  L  ++AQM  I+ H     A       +  + + M  ++  M   + A  M+EF K+  +  +  E ++D++D ALD+           ++V D I  + A+QL
Sbjct:    1 MNIFTKKPNPREVLRESKREMTQATRGIEKEIGSLQSEEKKLVLEIKRTAKSGNEGATKILARQLIRLRQQIANLQGSRAQMRGIATHTQAMHAHTSVAAGMQGATKAMAAMSKNMDPAKQAKVMREFQKQSAQMDMTTEMMSDSIDDALDNDEAEDETEDLTNQVLDEIGIDIASQL 178          
BLAST of FC868750 vs. ExPASy Swiss-Prot
Match: CM2A2_DICDI (Charged multivesicular body protein 2a homolog 2 OS=Dictyostelium discoideum GN=chmp2a2 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.187e-17
Identity = 50/178 (28.09%), Postives = 92/178 (51.69%), Query Frame = 3
Query:  189 MNMIKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVXDCIAGETAAQL 722
            M +   +  P+++LR+ QR L +  R I+R+   +Q +EK +   IK  AK+  M+SAK +A++LVR+R  + + YE K Q+ ++S+ +    +       +    + M  +N  M  P+    M EF ++  K  + EE +ND +D  ++           +++V D I  + A+QL
Sbjct:    1 MFLFGKQKTPKEVLRENQRNLNKSMREIDRERVALQNQEKKIILDIKKMAKQGQMNSAKIMAKDLVRTRYHIQKFYEMKTQLQAVSLRIQTLQSTQAMAEAMKGVTKAMITMNRQMNLPQFTKIMMEFEQQSDKMDMKEEMMNDTMDQVMEQDGEEEQSQEILNQVLDEIGIDLASQL 178          
BLAST of FC868750 vs. ExPASy Swiss-Prot
Match: VPS2A_ARATH (Vacuolar protein sorting-associated protein 2 homolog 1 OS=Arabidopsis thaliana GN=VPS2.1 PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 8.312e-17
Identity = 51/171 (29.82%), Postives = 92/171 (53.80%), Query Frame = 3
Query:  186 VMNMIKPK-PNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKS-AEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVXD 692
            +MN I  K   P +LLR+ +R L +  R IER+ + +Q +EK +   IK  AK+  M + K +A++L+R+R  + + Y+ K+Q+  +S+ + +++   + +G   K   + M  +N  M  P +   MQEF ++  K  ++ E + DA+D AL+           V +V D
Sbjct:    1 MMNSIFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLINEIKKTAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRI-QTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVSEVMGDAIDDALEGDEEEEETEDLVSQVLD 170          
BLAST of FC868750 vs. ExPASy Swiss-Prot
Match: VPS2B_ARATH (Vacuolar protein sorting-associated protein 2 homolog 2 OS=Arabidopsis thaliana GN=VPS2.2 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 7.037e-16
Identity = 50/178 (28.09%), Postives = 88/178 (49.44%), Query Frame = 3
Query:  189 MNMIKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVXDCIAGETAAQL 722
            MN+ K K  P+  LR  +R++    R IER+I  +Q EEK +   IK  AK  + ++ K LA++LVR R+ +  L  ++AQ+  ++ H     A       +  + + M  +N  M   + A  +++F K+  +  +  E +++A+D  LD            ++V D I    A+QL
Sbjct:    1 MNIFKKKTTPKDALRTSKREMAVATRGIEREITSLQLEEKRLVAEIKKTAKTGNEAATKILARQLVRLRQQITNLQGSRAQIRGVTTHTQALYASTSISSGMKGATKAMVAMNKQMAPTKQAKVIKDFQKQSAQLDMTIEMMSEAIDETLDKDEAEEETEDLTNQVLDEIGVGVASQL 178          
BLAST of FC868750 vs. ExPASy Swiss-Prot
Match: CHM2B_CHICK (Charged multivesicular body protein 2b OS=Gallus gallus GN=CHMP2B PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.780e-15
Identity = 48/172 (27.91%), Postives = 86/172 (50.00%), Query Frame = 3
Query:  207 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVXDCIAGETAAQL 722
            K     ++++  R+LR   R I R    ++++E+ ++  IK  AK  +  + K LA++LV+ RK  NR Y   +++ S+S       +  +  G ++ +A+ M+ VN  M   +   TMQ F KE  K  + EE +ND +D   D+          V++V D I  E + ++
Sbjct:    7 KKTVDDIIKEQNRELRGTQRTITRDRAALEKQERQLELEIKKMAKTGNKEACKVLAKQLVQLRKQKNRTYAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDASDEEEESQDIVNQVLDEIGIEISGKM 178          
BLAST of FC868750 vs. ExPASy Swiss-Prot
Match: CHM2A_XENLA (Charged multivesicular body protein 2a OS=Xenopus laevis GN=chmp2a PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.327e-14
Identity = 43/162 (26.54%), Postives = 83/162 (51.23%), Query Frame = 3
Query:  207 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVXD 692
            +  P++LLR  QR L +  R ++R+ + ++++EK +   IK  AK+  M + K +A++LVR+R+ V +    +A + ++S+ +    +       +    + M  +N  +K P++   M EF K+     + EE +NDA+D A+            V +V D
Sbjct:    8 RKTPEELLRQNQRALNRAMRELDRERQKLEQQEKKIIADIKKMAKQGQMDAVKIMAKDLVRTRRYVKKFIMMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMATMNRQLKLPQIQKIMMEFEKQSEIMDMKEEMMNDAIDDAMGDEDDEEESDAVVSQVLD 169          
The following BLAST results are available for this feature:
BLAST of FC868750 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
CHMP3_XENTR9.774e-3443.95Charged multivesicular body protein 3 OS=Xenopus t... [more]
CHMP3_DICDI5.363e-3245.39Charged multivesicular body protein 3 OS=Dictyoste... [more]
VPS24_SCHPO1.239e-2034.59Vacuolar protein sorting-associated protein 24 OS=... [more]
VPS24_YEAST1.049e-1932.64Vacuolar protein-sorting-associated protein 24 OS=... [more]
VPS2C_ARATH1.789e-1930.34Vacuolar protein sorting-associated protein 2 homo... [more]
CM2A2_DICDI2.187e-1728.09Charged multivesicular body protein 2a homolog 2 O... [more]
VPS2A_ARATH8.312e-1729.82Vacuolar protein sorting-associated protein 2 homo... [more]
VPS2B_ARATH7.037e-1628.09Vacuolar protein sorting-associated protein 2 homo... [more]
CHM2B_CHICK7.780e-1527.91Charged multivesicular body protein 2b OS=Gallus g... [more]
CHM2A_XENLA1.327e-1426.54Charged multivesicular body protein 2a OS=Xenopus ... [more]

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Properties
Property NameValue
Genbank descriptionC31004C12EF AbioticL1 Citrus clementina cDNA clone C31004C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868750 ID=FC868750; Name=FC868750; organism=Citrus clementina; type=EST; length=727bp
AGGCGTCCAGCGATCGATCGTTGCTGGACCTCAGAAAAATAAAAATTCAG
AAAAAAAAAGATACGAATTTGGATTGCGTTTGATGTTCAATTGATCGGTT
GCTGGAAAAAGAGAAGACTTCGAAGATCAGACGAGAAAAATTAGAAAAAA
ATAATAGAGATAAAAAAGCTAAGGAAATGGAAAAAGTTATGAACATGATA
AAGCCAAAGCCTAATCCGCAACAGCTGTTGAGGGATTGGCAACGTAAGCT
TCGCCAAGAGTGCCGGAACATTGAGCGCCAAATTCGAGATATACAGAGAG
AAGAGAAAAATGTGCAGAAAGCAATTAAAGATGCTGCCAAGAGAAACGAC
ATGAGCTCTGCCAAGTCTCTGGCTCAGGAACTCGTCAGATCTAGAAAGAC
AGTTAACCGTCTCTATGAAAATAAGGCACAAATGAACTCAATATCGATGC
ACCTAGGAGAAAGTGTAGCGATTGCTCGTACTGTGGGGCATTTGAACAAG
AGTGCTGAGGTTATGAAACTTGTCAACAATCTCATGAAGGCACCAGAAGT
AGCTGCTACAATGCAAGAGTTCAGCAAAGAAATGACCAAGGCTGGAGTAA
TTGAGGAGTTTGTGAATGATGCTGTTGATACAGCACTGGACTCGGAGGAT
ATTGAAGAGGAGATAGAAGAAGAAGTTGATAAGGTCTTNGACTGCATTGC
TGGTGAGACTGCAGCACAGCTGCCTGA
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