FC868750
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC868750 vs. ExPASy Swiss-Prot
Match: CH2BA_XENLA (Charged multivesicular body protein 2b-A OS=Xenopus laevis GN=chmp2b-A PE=2 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.327e-14 Identity = 47/172 (27.33%), Postives = 86/172 (50.00%), Query Frame = 3 Query: 207 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVXDCIAGETAAQL 722 K +++D ++L+ + R I R ++++EK ++ IK AK + + K LA++LV+ RK R Y +++ S+S + + G ++ +A+ M+ VN M + TMQ F KE K + EE +ND +D D+ V++V D I E + ++ Sbjct: 7 KKTVDDIIKDQNKELKGQQRAITRDRTALEKQEKQLEMEIKKMAKAGNKDACKVLAKQLVQLRKQKTRTYAVSSKVTSMSTQTKVMSSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDASEDEEESQDIVNQVLDEIGIEISGKM 178
BLAST of FC868750 vs. ExPASy Swiss-Prot
Match: CHM2A_XENTR (Charged multivesicular body protein 2a OS=Xenopus tropicalis GN=chmp2a PE=2 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 2.956e-14 Identity = 42/162 (25.93%), Postives = 83/162 (51.23%), Query Frame = 3 Query: 207 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVXD 692 + P+++LR QR L + R ++R+ + ++++EK + IK AK+ M + K +A++LVR+R+ V + +A + ++S+ + + + + M +N +K P++ M EF K+ + EE +NDA+D A+ V +V D Sbjct: 8 RKTPEEMLRQNQRALNKAMREMDRERQKLEQQEKKIIADIKKMAKQGQMDAVKIMAKDLVRTRRYVKKFIMMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMATMNRQLKLPQIQKIMMEFEKQSEIMDMKEEMMNDAIDDAMGDEDDEEESDAVVSQVLD 169
BLAST of FC868750 vs. ExPASy Swiss-Prot
Match: CHM2B_XENTR (Charged multivesicular body protein 2b OS=Xenopus tropicalis GN=chmp2b PE=2 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 3.861e-14 Identity = 47/172 (27.33%), Postives = 85/172 (49.42%), Query Frame = 3 Query: 207 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVXDCIAGETAAQL 722 K ++R+ ++LR R I R ++++EK ++ IK AK + + + LA++LV+ RK R Y +++ S+S + + G ++ +A+ M+ VN M + TMQ F KE K + EE +ND +D D+ V++V D I E + ++ Sbjct: 7 KKTVDDIIREQNKELRGTQRAITRDRAALEKQEKQLEMEIKKMAKAGNKDACRVLAKQLVQLRKQKTRTYAVSSKVTSMSTQTKVMSSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDASDDEEESQDIVNQVLDEIGIEISGKM 178
BLAST of FC868750 vs. ExPASy Swiss-Prot
Match: CHM2A_DANRE (Charged multivesicular body protein 2a OS=Danio rerio GN=chmp2a PE=2 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 5.043e-14 Identity = 41/162 (25.31%), Postives = 84/162 (51.85%), Query Frame = 3 Query: 207 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVXD 692 + P+++LR QR L + R+++R+ + ++++EK + IK AK+ M + K +A++LVR+R+ V + +A + ++S+ + + + + M +N +K P++ M EF ++ + EE +NDA+D A+ V +V D Sbjct: 8 RKTPEEMLRQNQRALNRAMRDLDRERQRLEQQEKKIIADIKKMAKQGQMDAVKIMAKDLVRTRRYVKKFIMMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMATMNRQLKLPQIQKIMMEFERQSEIMDMKEEMMNDAIDDAMGDEDDEEESDAVVSQVLD 169
BLAST of FC868750 vs. ExPASy Swiss-Prot
Match: CHM2A_CHICK (Charged multivesicular body protein 2a OS=Gallus gallus GN=CHMP2A PE=2 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 5.043e-14 Identity = 46/167 (27.54%), Postives = 86/167 (51.50%), Query Frame = 3 Query: 207 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHL-----GESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVXD 692 + P++LLR QR L + R ++R+ + ++ +EK + IK AK+ M + K +A++LVR+R+ V + +A + ++S+ + S+A+A + + M +N +K P++ M EF K+ + EE +NDA+D A+ V +V D Sbjct: 8 RKTPEELLRQNQRALTRAMRELDRERQKLEAQEKKIIIDIKKMAKQGQMDAVKIMAKDLVRTRRYVKKFITMRANVQAVSLKIQTLKSNNSMALA-----MKGVTKAMATMNRQLKLPQIQKIMMEFEKQAGIMDMKEELMNDAIDDAMGDEDDEEESDAVVSQVLD 169
BLAST of FC868750 vs. ExPASy Swiss-Prot
Match: DID4_YEAST (DOA4-independent degradation protein 4 OS=Saccharomyces cerevisiae GN=DID4 PE=1 SV=2) HSP 1 Score: 77.411 bits (189), Expect = 8.602e-14 Identity = 46/170 (27.06%), Postives = 90/170 (52.94%), Query Frame = 3 Query: 216 PQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTAL-DSXXXXXXXXXXVDKVXDCIAGETAAQL 722 PQ+ L+ QR L + R +ER+ R ++ ++K + IK +AK +++AK A++LVR+R + + KAQ+ +IS+ + + + ++++ ++ +N M P++ EF K+ G +EF+++A+D + D V+KV D I + +QL Sbjct: 14 PQERLKKNQRALERTQRELEREKRKLELQDKKLVSEIKKSAKNGQVAAAKVQAKDLVRTRNYIQKFDNMKAQLQAISLRIQAVRSSDQMTRSMSEATGLLAGMNRTMNLPQLQRISMEFEKQSDLMGQRQEFMDEAIDNVMGDEVDEDEEADEIVNKVLDEIGVDLNSQL 183
BLAST of FC868750 vs. ExPASy Swiss-Prot
Match: CH2BB_XENLA (Charged multivesicular body protein 2b-B OS=Xenopus laevis GN=chmp2b-B PE=2 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 8.602e-14 Identity = 46/172 (26.74%), Postives = 85/172 (49.42%), Query Frame = 3 Query: 207 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVXDCIAGETAAQL 722 K ++R+ ++LR R I R ++++EK ++ IK AK + + + LA++LV+ RK R Y +++ S+S + + G ++ +A+ M+ VN M + TMQ F KE K + +E +ND +D D+ V++V D I E + ++ Sbjct: 7 KKTVDDIIREQNKELRGTQRAITRDRAALEKQEKQLEMEIKKMAKTGNKDACRVLAKQLVQLRKQKTRTYAVSSKVTSMSTQTKVMSSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTDEMINDTLDDIFDASEDEEESQDIVNQVLDEIGIEISGKM 178
BLAST of FC868750 vs. ExPASy Swiss-Prot
Match: CHM2A_MOUSE (Charged multivesicular body protein 2a OS=Mus musculus GN=Chmp2a PE=1 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.467e-13 Identity = 45/169 (26.63%), Postives = 86/169 (50.89%), Query Frame = 3 Query: 207 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMK-------LVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVXD 692 + P++LLR QR L + R ++R+ + ++ +EK + IK AK+ M + + +A++LVR+R+ V + +A + ++S+ + +T+ N A+ MK +N +K P++ M EF ++ + EE +NDA+D A+ V +V D Sbjct: 8 RKTPEELLRQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQMDAVRIMAKDLVRTRRYVRKFVLMRANIQAVSLKI-------QTLKSNNSMAQAMKGVTKAMGTMNRQLKLPQIQKIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVSQVLD 169
BLAST of FC868750 vs. ExPASy Swiss-Prot
Match: CHM2A_HUMAN (Charged multivesicular body protein 2a OS=Homo sapiens GN=CHMP2A PE=1 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.467e-13 Identity = 45/169 (26.63%), Postives = 86/169 (50.89%), Query Frame = 3 Query: 207 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMK-------LVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVXD 692 + P++LLR QR L + R ++R+ + ++ +EK + IK AK+ M + + +A++LVR+R+ V + +A + ++S+ + +T+ N A+ MK +N +K P++ M EF ++ + EE +NDA+D A+ V +V D Sbjct: 8 RKTPEELLRQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQMDAVRIMAKDLVRTRRYVRKFVLMRANIQAVSLKI-------QTLKSNNSMAQAMKGVTKAMGTMNRQLKLPQIQKIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVSQVLD 169
BLAST of FC868750 vs. ExPASy Swiss-Prot
Match: CHM2B_PONAB (Charged multivesicular body protein 2b OS=Pongo abelii GN=CHMP2B PE=2 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 5.576e-13 Identity = 47/172 (27.33%), Postives = 83/172 (48.26%), Query Frame = 3 Query: 207 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVXDCIAGETAAQL 722 K ++++ R+LR R I R ++++EK ++ IK AK + + K LA++LV RK R + +++ S+S + + G ++ +A+ M+ VN M + TMQ F KE K + EE +ND +D D V++V D I E + ++ Sbjct: 7 KKTVDDVIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACKVLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGIEISGKM 178 The following BLAST results are available for this feature:
BLAST of FC868750 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 34
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC868750 ID=FC868750; Name=FC868750; organism=Citrus clementina; type=EST; length=727bpback to top |