FC868750

Overview
NameFC868750
Unique NameFC868750
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length727
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15311 contig Ccv1_Contig15311:6..733. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868750 vs. ExPASy Swiss-Prot
Match: CH2BA_XENLA (Charged multivesicular body protein 2b-A OS=Xenopus laevis GN=chmp2b-A PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.327e-14
Identity = 47/172 (27.33%), Postives = 86/172 (50.00%), Query Frame = 3
Query:  207 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVXDCIAGETAAQL 722
            K     +++D  ++L+ + R I R    ++++EK ++  IK  AK  +  + K LA++LV+ RK   R Y   +++ S+S       +  +  G ++ +A+ M+ VN  M   +   TMQ F KE  K  + EE +ND +D   D+          V++V D I  E + ++
Sbjct:    7 KKTVDDIIKDQNKELKGQQRAITRDRTALEKQEKQLEMEIKKMAKAGNKDACKVLAKQLVQLRKQKTRTYAVSSKVTSMSTQTKVMSSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDASEDEEESQDIVNQVLDEIGIEISGKM 178          
BLAST of FC868750 vs. ExPASy Swiss-Prot
Match: CHM2A_XENTR (Charged multivesicular body protein 2a OS=Xenopus tropicalis GN=chmp2a PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.956e-14
Identity = 42/162 (25.93%), Postives = 83/162 (51.23%), Query Frame = 3
Query:  207 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVXD 692
            +  P+++LR  QR L +  R ++R+ + ++++EK +   IK  AK+  M + K +A++LVR+R+ V +    +A + ++S+ +    +       +    + M  +N  +K P++   M EF K+     + EE +NDA+D A+            V +V D
Sbjct:    8 RKTPEEMLRQNQRALNKAMREMDRERQKLEQQEKKIIADIKKMAKQGQMDAVKIMAKDLVRTRRYVKKFIMMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMATMNRQLKLPQIQKIMMEFEKQSEIMDMKEEMMNDAIDDAMGDEDDEEESDAVVSQVLD 169          
BLAST of FC868750 vs. ExPASy Swiss-Prot
Match: CHM2B_XENTR (Charged multivesicular body protein 2b OS=Xenopus tropicalis GN=chmp2b PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.861e-14
Identity = 47/172 (27.33%), Postives = 85/172 (49.42%), Query Frame = 3
Query:  207 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVXDCIAGETAAQL 722
            K     ++R+  ++LR   R I R    ++++EK ++  IK  AK  +  + + LA++LV+ RK   R Y   +++ S+S       +  +  G ++ +A+ M+ VN  M   +   TMQ F KE  K  + EE +ND +D   D+          V++V D I  E + ++
Sbjct:    7 KKTVDDIIREQNKELRGTQRAITRDRAALEKQEKQLEMEIKKMAKAGNKDACRVLAKQLVQLRKQKTRTYAVSSKVTSMSTQTKVMSSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDASDDEEESQDIVNQVLDEIGIEISGKM 178          
BLAST of FC868750 vs. ExPASy Swiss-Prot
Match: CHM2A_DANRE (Charged multivesicular body protein 2a OS=Danio rerio GN=chmp2a PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.043e-14
Identity = 41/162 (25.31%), Postives = 84/162 (51.85%), Query Frame = 3
Query:  207 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVXD 692
            +  P+++LR  QR L +  R+++R+ + ++++EK +   IK  AK+  M + K +A++LVR+R+ V +    +A + ++S+ +    +       +    + M  +N  +K P++   M EF ++     + EE +NDA+D A+            V +V D
Sbjct:    8 RKTPEEMLRQNQRALNRAMRDLDRERQRLEQQEKKIIADIKKMAKQGQMDAVKIMAKDLVRTRRYVKKFIMMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMATMNRQLKLPQIQKIMMEFERQSEIMDMKEEMMNDAIDDAMGDEDDEEESDAVVSQVLD 169          
BLAST of FC868750 vs. ExPASy Swiss-Prot
Match: CHM2A_CHICK (Charged multivesicular body protein 2a OS=Gallus gallus GN=CHMP2A PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.043e-14
Identity = 46/167 (27.54%), Postives = 86/167 (51.50%), Query Frame = 3
Query:  207 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHL-----GESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVXD 692
            +  P++LLR  QR L +  R ++R+ + ++ +EK +   IK  AK+  M + K +A++LVR+R+ V +    +A + ++S+ +       S+A+A     +    + M  +N  +K P++   M EF K+     + EE +NDA+D A+            V +V D
Sbjct:    8 RKTPEELLRQNQRALTRAMRELDRERQKLEAQEKKIIIDIKKMAKQGQMDAVKIMAKDLVRTRRYVKKFITMRANVQAVSLKIQTLKSNNSMALA-----MKGVTKAMATMNRQLKLPQIQKIMMEFEKQAGIMDMKEELMNDAIDDAMGDEDDEEESDAVVSQVLD 169          
BLAST of FC868750 vs. ExPASy Swiss-Prot
Match: DID4_YEAST (DOA4-independent degradation protein 4 OS=Saccharomyces cerevisiae GN=DID4 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 8.602e-14
Identity = 46/170 (27.06%), Postives = 90/170 (52.94%), Query Frame = 3
Query:  216 PQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTAL-DSXXXXXXXXXXVDKVXDCIAGETAAQL 722
            PQ+ L+  QR L +  R +ER+ R ++ ++K +   IK +AK   +++AK  A++LVR+R  + +    KAQ+ +IS+ +    +  +    ++++  ++  +N  M  P++     EF K+    G  +EF+++A+D  + D           V+KV D I  +  +QL
Sbjct:   14 PQERLKKNQRALERTQRELEREKRKLELQDKKLVSEIKKSAKNGQVAAAKVQAKDLVRTRNYIQKFDNMKAQLQAISLRIQAVRSSDQMTRSMSEATGLLAGMNRTMNLPQLQRISMEFEKQSDLMGQRQEFMDEAIDNVMGDEVDEDEEADEIVNKVLDEIGVDLNSQL 183          
BLAST of FC868750 vs. ExPASy Swiss-Prot
Match: CH2BB_XENLA (Charged multivesicular body protein 2b-B OS=Xenopus laevis GN=chmp2b-B PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.602e-14
Identity = 46/172 (26.74%), Postives = 85/172 (49.42%), Query Frame = 3
Query:  207 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVXDCIAGETAAQL 722
            K     ++R+  ++LR   R I R    ++++EK ++  IK  AK  +  + + LA++LV+ RK   R Y   +++ S+S       +  +  G ++ +A+ M+ VN  M   +   TMQ F KE  K  + +E +ND +D   D+          V++V D I  E + ++
Sbjct:    7 KKTVDDIIREQNKELRGTQRAITRDRAALEKQEKQLEMEIKKMAKTGNKDACRVLAKQLVQLRKQKTRTYAVSSKVTSMSTQTKVMSSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTDEMINDTLDDIFDASEDEEESQDIVNQVLDEIGIEISGKM 178          
BLAST of FC868750 vs. ExPASy Swiss-Prot
Match: CHM2A_MOUSE (Charged multivesicular body protein 2a OS=Mus musculus GN=Chmp2a PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.467e-13
Identity = 45/169 (26.63%), Postives = 86/169 (50.89%), Query Frame = 3
Query:  207 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMK-------LVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVXD 692
            +  P++LLR  QR L +  R ++R+ + ++ +EK +   IK  AK+  M + + +A++LVR+R+ V +    +A + ++S+ +       +T+   N  A+ MK        +N  +K P++   M EF ++     + EE +NDA+D A+            V +V D
Sbjct:    8 RKTPEELLRQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQMDAVRIMAKDLVRTRRYVRKFVLMRANIQAVSLKI-------QTLKSNNSMAQAMKGVTKAMGTMNRQLKLPQIQKIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVSQVLD 169          
BLAST of FC868750 vs. ExPASy Swiss-Prot
Match: CHM2A_HUMAN (Charged multivesicular body protein 2a OS=Homo sapiens GN=CHMP2A PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.467e-13
Identity = 45/169 (26.63%), Postives = 86/169 (50.89%), Query Frame = 3
Query:  207 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMK-------LVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVXD 692
            +  P++LLR  QR L +  R ++R+ + ++ +EK +   IK  AK+  M + + +A++LVR+R+ V +    +A + ++S+ +       +T+   N  A+ MK        +N  +K P++   M EF ++     + EE +NDA+D A+            V +V D
Sbjct:    8 RKTPEELLRQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQMDAVRIMAKDLVRTRRYVRKFVLMRANIQAVSLKI-------QTLKSNNSMAQAMKGVTKAMGTMNRQLKLPQIQKIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVSQVLD 169          
BLAST of FC868750 vs. ExPASy Swiss-Prot
Match: CHM2B_PONAB (Charged multivesicular body protein 2b OS=Pongo abelii GN=CHMP2B PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.576e-13
Identity = 47/172 (27.33%), Postives = 83/172 (48.26%), Query Frame = 3
Query:  207 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVXDCIAGETAAQL 722
            K     ++++  R+LR   R I R    ++++EK ++  IK  AK  +  + K LA++LV  RK   R +   +++ S+S       +  +  G ++ +A+ M+ VN  M   +   TMQ F KE  K  + EE +ND +D   D           V++V D I  E + ++
Sbjct:    7 KKTVDDVIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACKVLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGIEISGKM 178          
The following BLAST results are available for this feature:
BLAST of FC868750 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
CH2BA_XENLA1.327e-1427.33Charged multivesicular body protein 2b-A OS=Xenopu... [more]
CHM2A_XENTR2.956e-1425.93Charged multivesicular body protein 2a OS=Xenopus ... [more]
CHM2B_XENTR3.861e-1427.33Charged multivesicular body protein 2b OS=Xenopus ... [more]
CHM2A_DANRE5.043e-1425.31Charged multivesicular body protein 2a OS=Danio re... [more]
CHM2A_CHICK5.043e-1427.54Charged multivesicular body protein 2a OS=Gallus g... [more]
DID4_YEAST8.602e-1427.06DOA4-independent degradation protein 4 OS=Saccharo... [more]
CH2BB_XENLA8.602e-1426.74Charged multivesicular body protein 2b-B OS=Xenopu... [more]
CHM2A_MOUSE1.467e-1326.63Charged multivesicular body protein 2a OS=Mus musc... [more]
CHM2A_HUMAN1.467e-1326.63Charged multivesicular body protein 2a OS=Homo sap... [more]
CHM2B_PONAB5.576e-1327.33Charged multivesicular body protein 2b OS=Pongo ab... [more]

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Properties
Property NameValue
Genbank descriptionC31004C12EF AbioticL1 Citrus clementina cDNA clone C31004C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868750 ID=FC868750; Name=FC868750; organism=Citrus clementina; type=EST; length=727bp
AGGCGTCCAGCGATCGATCGTTGCTGGACCTCAGAAAAATAAAAATTCAG
AAAAAAAAAGATACGAATTTGGATTGCGTTTGATGTTCAATTGATCGGTT
GCTGGAAAAAGAGAAGACTTCGAAGATCAGACGAGAAAAATTAGAAAAAA
ATAATAGAGATAAAAAAGCTAAGGAAATGGAAAAAGTTATGAACATGATA
AAGCCAAAGCCTAATCCGCAACAGCTGTTGAGGGATTGGCAACGTAAGCT
TCGCCAAGAGTGCCGGAACATTGAGCGCCAAATTCGAGATATACAGAGAG
AAGAGAAAAATGTGCAGAAAGCAATTAAAGATGCTGCCAAGAGAAACGAC
ATGAGCTCTGCCAAGTCTCTGGCTCAGGAACTCGTCAGATCTAGAAAGAC
AGTTAACCGTCTCTATGAAAATAAGGCACAAATGAACTCAATATCGATGC
ACCTAGGAGAAAGTGTAGCGATTGCTCGTACTGTGGGGCATTTGAACAAG
AGTGCTGAGGTTATGAAACTTGTCAACAATCTCATGAAGGCACCAGAAGT
AGCTGCTACAATGCAAGAGTTCAGCAAAGAAATGACCAAGGCTGGAGTAA
TTGAGGAGTTTGTGAATGATGCTGTTGATACAGCACTGGACTCGGAGGAT
ATTGAAGAGGAGATAGAAGAAGAAGTTGATAAGGTCTTNGACTGCATTGC
TGGTGAGACTGCAGCACAGCTGCCTGA
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