FC868750

Overview
NameFC868750
Unique NameFC868750
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length727
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15311 contig Ccv1_Contig15311:6..733. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868750 vs. ExPASy Swiss-Prot
Match: CHM2B_HUMAN (Charged multivesicular body protein 2b OS=Homo sapiens GN=CHMP2B PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.576e-13
Identity = 47/172 (27.33%), Postives = 83/172 (48.26%), Query Frame = 3
Query:  207 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVXDCIAGETAAQL 722
            K     ++++  R+LR   R I R    ++++EK ++  IK  AK  +  + K LA++LV  RK   R +   +++ S+S       +  +  G ++ +A+ M+ VN  M   +   TMQ F KE  K  + EE +ND +D   D           V++V D I  E + ++
Sbjct:    7 KKTVDDVIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACKVLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGIEISGKM 178          
BLAST of FC868750 vs. ExPASy Swiss-Prot
Match: CHM2B_MOUSE (Charged multivesicular body protein 2b OS=Mus musculus GN=Chmp2b PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.242e-12
Identity = 46/172 (26.74%), Postives = 83/172 (48.26%), Query Frame = 3
Query:  207 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVXDCIAGETAAQL 722
            K     ++++  R+LR   R I R    ++++EK ++  IK  AK  +  + + LA++LV  RK   R +   +++ S+S       +  +  G ++ +A+ M+ VN  M   +   TMQ F KE  K  + EE +ND +D   D           V++V D I  E + ++
Sbjct:    7 KKTVDDVIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACRVLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGIEISGKM 178          
BLAST of FC868750 vs. ExPASy Swiss-Prot
Match: CHM2B_DANRE (Charged multivesicular body protein 2b OS=Danio rerio GN=chmp2b PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.242e-12
Identity = 45/178 (25.28%), Postives = 84/178 (47.19%), Query Frame = 3
Query:  189 MNMIKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVXDCIAGETAAQL 722
            M  +  K     ++++  ++LR   R I R    ++++EK ++  IK  AK  +  + K LA++LV+ RK   R Y   +++ S+S       +  +  G +  + + M+ VN  M   +   T+Q F KE  K  + EE +ND +D   +           V++V D I  E + ++
Sbjct:    1 MTSLFKKKTVDDVIKEQNKELRGTQRQIARDRTALEKQEKQLEMEIKKMAKTGNRDACKVLAKQLVQVRKQKTRTYAVSSKVTSMSTQTKLMNSQMKMAGAMATTTKTMQAVNKKMDPKKTMQTLQNFQKETAKMDMTEEMMNDTLDEIFEDSGDEEESQDIVNQVLDEIGIEISGKM 178          
BLAST of FC868750 vs. ExPASy Swiss-Prot
Match: CHM2B_BOVIN (Charged multivesicular body protein 2b OS=Bos taurus GN=CHMP2B PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.242e-12
Identity = 46/172 (26.74%), Postives = 83/172 (48.26%), Query Frame = 3
Query:  207 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVXDCIAGETAAQL 722
            K     ++++  R+LR   R I R    ++++EK ++  IK  AK  +  + + LA++LV  RK   R +   +++ S+S       +  +  G ++ +A+ M+ VN  M   +   TMQ F KE  K  + EE +ND +D   D           V++V D I  E + ++
Sbjct:    7 KKTVDDVIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACRVLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGIEISGKM 178          
The following BLAST results are available for this feature:
BLAST of FC868750 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
CHM2B_HUMAN5.576e-1327.33Charged multivesicular body protein 2b OS=Homo sap... [more]
CHM2B_MOUSE1.242e-1226.74Charged multivesicular body protein 2b OS=Mus musc... [more]
CHM2B_DANRE1.242e-1225.28Charged multivesicular body protein 2b OS=Danio re... [more]
CHM2B_BOVIN1.242e-1226.74Charged multivesicular body protein 2b OS=Bos taur... [more]

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Properties
Property NameValue
Genbank descriptionC31004C12EF AbioticL1 Citrus clementina cDNA clone C31004C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868750 ID=FC868750; Name=FC868750; organism=Citrus clementina; type=EST; length=727bp
AGGCGTCCAGCGATCGATCGTTGCTGGACCTCAGAAAAATAAAAATTCAG
AAAAAAAAAGATACGAATTTGGATTGCGTTTGATGTTCAATTGATCGGTT
GCTGGAAAAAGAGAAGACTTCGAAGATCAGACGAGAAAAATTAGAAAAAA
ATAATAGAGATAAAAAAGCTAAGGAAATGGAAAAAGTTATGAACATGATA
AAGCCAAAGCCTAATCCGCAACAGCTGTTGAGGGATTGGCAACGTAAGCT
TCGCCAAGAGTGCCGGAACATTGAGCGCCAAATTCGAGATATACAGAGAG
AAGAGAAAAATGTGCAGAAAGCAATTAAAGATGCTGCCAAGAGAAACGAC
ATGAGCTCTGCCAAGTCTCTGGCTCAGGAACTCGTCAGATCTAGAAAGAC
AGTTAACCGTCTCTATGAAAATAAGGCACAAATGAACTCAATATCGATGC
ACCTAGGAGAAAGTGTAGCGATTGCTCGTACTGTGGGGCATTTGAACAAG
AGTGCTGAGGTTATGAAACTTGTCAACAATCTCATGAAGGCACCAGAAGT
AGCTGCTACAATGCAAGAGTTCAGCAAAGAAATGACCAAGGCTGGAGTAA
TTGAGGAGTTTGTGAATGATGCTGTTGATACAGCACTGGACTCGGAGGAT
ATTGAAGAGGAGATAGAAGAAGAAGTTGATAAGGTCTTNGACTGCATTGC
TGGTGAGACTGCAGCACAGCTGCCTGA
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