FC868752
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC868752 vs. ExPASy Swiss-Prot
Match: ATR_CAEEL (Serine/threonine-protein kinase ATR OS=Caenorhabditis elegans GN=atl-1 PE=2 SV=2) HSP 1 Score: 87.0409 bits (214), Expect = 1.086e-16 Identity = 42/98 (42.86%), Postives = 59/98 (60.20%), Query Frame = 3 Query: 195 WLERRTNYTRSLAVMSMVGYLLGLGDRHPSNLMLHRYSGKILHIDFGDCFEASMNREKFPEKVPFRLTRMLVKAMEVSGIEGNFRSTCENVMQVLRSN 488 W R + +S AVMS++GY+ GLGDRH NLM+H +GK +H+DF F PE VPFRLT+ ++ M ++G FR+ CE ++V R N Sbjct: 2346 WFASRKLFAKSTAVMSVIGYIFGLGDRHTKNLMVHT-TGKCIHVDFDMIFNKGETLGT-PELVPFRLTQNMINGMGEVALDGEFRTVCEQALRVFREN 2441
BLAST of FC868752 vs. ExPASy Swiss-Prot
Match: PRKDC_CHICK (DNA-dependent protein kinase catalytic subunit OS=Gallus gallus GN=PRKDC PE=2 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 5.388e-16 Identity = 47/136 (34.56%), Postives = 80/136 (58.82%), Query Frame = 3 Query: 150 DLARVLWLKSRTS-EIWLERRTNYTRSLAVMSMVGYLLGLGDRHPSNLMLHRYSGKILHIDFGDCFEASMNREKFPEKVPFRLTRMLVKAMEVSGIEGNFRSTCENVMQVLRSNRDSVMAMMEAFVHDPLINWRLF 554 DL R ++K TS E +L R+++ S A+M + ++LG+GDRH SN M+++ +G ++ IDFG F ++ PE +PFRLTR V M G S + ++ R++ D +++ M+ FV +P ++W+ F Sbjct: 3887 DLLRRAFVKMSTSPEAFLALRSHFVSSHALMCVSHWILGIGDRHLSNFMINKETGGMVGIDFGHAFGSATQFLPVPELMPFRLTRQFVNLMMPVKEWGLIYSVMVHALRAYRADPDLLISTMDVFVKEPSLDWKNF 4022
BLAST of FC868752 vs. ExPASy Swiss-Prot
Match: PRKDC_DICDI (DNA-dependent protein kinase catalytic subunit OS=Dictyostelium discoideum GN=dnapkcs PE=3 SV=2) HSP 1 Score: 84.3445 bits (207), Expect = 7.037e-16 Identity = 41/133 (30.83%), Postives = 70/133 (52.63%), Query Frame = 3 Query: 147 NDLARVLWLKSRTSEIWLERRTNYTRSLAVMSMVGYLLGLGDRHPSNLMLHRYSGKILHIDFGDCFEASMNREKFPEKVPFRLTRMLVKAMEVSGIEGNFRSTCENVMQVLRSNRDSVMAMMEAFVHDPLINW 545 N L +W S + E +L R ++ RSLA S+ Y++G+GDRH N ++ + G+++ IDFG F + PE +PFRLTR + G + L++ ++ ++ M+ FV +PL++W Sbjct: 4054 NLLQNGIWSLSSSPESYLFIRNSFARSLASFSVCSYVIGIGDRHLENFLISQRDGRLIGIDFGHAFGTATQFLPIPELMPFRLTRQFTSFLRPLDSVGLLNHNMTYTLTALQNQKEILLTTMDVFVKEPLLDW 4186
BLAST of FC868752 vs. ExPASy Swiss-Prot
Match: PRKDC_XENLA (DNA-dependent protein kinase catalytic subunit OS=Xenopus laevis GN=prkdc PE=2 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 9.190e-16 Identity = 45/134 (33.58%), Postives = 78/134 (58.21%), Query Frame = 3 Query: 150 DLARVLWLK-SRTSEIWLERRTNYTRSLAVMSMVGYLLGLGDRHPSNLMLHRYSGKILHIDFGDCFEASMNREKFPEKVPFRLTRMLVKAMEVSGIEGNFRSTCENVMQVLRSNRDSVMAMMEAFVHDPLINWR 548 DL R ++K S T E +L R+++ RS A++ + +++G+GDRH SN M++ +G ++ IDFG F + PE +PFRLTR +V M G F S + ++ RS+ ++ M+ F+ +P ++W+ Sbjct: 3899 DLLRRAFVKMSTTPEAFLSLRSHFARSHALLCVSHWIVGIGDRHLSNFMINMETGGMIGIDFGHAFGTATQFLPVPELMPFRLTRQIVNLMLPMKDSGLFDSVMVHSLRAYRSDPGLLVTTMDVFIKEPSLDWK 4032
BLAST of FC868752 vs. ExPASy Swiss-Prot
Match: PRKDC_CANFA (DNA-dependent protein kinase catalytic subunit OS=Canis familiaris GN=PRKDC PE=2 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.123e-13 Identity = 44/136 (32.35%), Postives = 73/136 (53.68%), Query Frame = 3 Query: 150 DLARVLWLKSRTSEI-WLERRTNYTRSLAVMSMVGYLLGLGDRHPSNLMLHRYSGKILHIDFGDCFEASMNREKFPEKVPFRLTRMLVKAMEVSGIEGNFRSTCENVMQVLRSNRDSVMAMMEAFVHDPLINWRLF 554 DL + +LK T +L R+++ S A+M + ++LG+GDRH +N M+ +G ++ IDFG F ++ PE +PFRLTR + M G S + ++ RS+ D + M+ FV +P +W+ F Sbjct: 3897 DLLKRAFLKMSTGPAAFLALRSHFASSHALMCISHWILGIGDRHLNNFMVSMETGGLIGIDFGHAFGSATQFLPVPELMPFRLTRQFINLMLPMKEAGVVYSIMVHALRAFRSHSDLLTNTMDVFVKEPSFDWKNF 4032
BLAST of FC868752 vs. ExPASy Swiss-Prot
Match: PRKDC_MOUSE (DNA-dependent protein kinase catalytic subunit OS=Mus musculus GN=Prkdc PE=1 SV=2) HSP 1 Score: 76.6406 bits (187), Expect = 1.467e-13 Identity = 45/136 (33.09%), Postives = 73/136 (53.68%), Query Frame = 3 Query: 150 DLARVLWLKSRTS-EIWLERRTNYTRSLAVMSMVGYLLGLGDRHPSNLMLHRYSGKILHIDFGDCFEASMNREKFPEKVPFRLTRMLVKAMEVSGIEGNFRSTCENVMQVLRSNRDSVMAMMEAFVHDPLINWRLF 554 DL + ++K TS E +L R+++ S A++ + +LLG+GDRH +N M+ +G ++ IDFG F ++ PE +PFRLTR V M G + + ++ RS + ME FV +P +W+ F Sbjct: 3881 DLLKRAFVKMSTSPEAFLALRSHFASSHALLCISHWLLGIGDRHLNNFMVAMETGSVIGIDFGHAFGSATQFLPVPELMPFRLTRQFVSLMLPMKETGLMCTVMVHALRAFRSCAGLLTDTMEIFVKEPSFDWKSF 4016
BLAST of FC868752 vs. ExPASy Swiss-Prot
Match: PRKDC_HUMAN (DNA-dependent protein kinase catalytic subunit OS=Homo sapiens GN=PRKDC PE=1 SV=3) HSP 1 Score: 74.3294 bits (181), Expect = 7.282e-13 Identity = 42/136 (30.88%), Postives = 74/136 (54.41%), Query Frame = 3 Query: 150 DLARVLWLKSRTS-EIWLERRTNYTRSLAVMSMVGYLLGLGDRHPSNLMLHRYSGKILHIDFGDCFEASMNREKFPEKVPFRLTRMLVKAMEVSGIEGNFRSTCENVMQVLRSNRDSVMAMMEAFVHDPLINWRLF 554 DL + +++ TS E +L R+++ S A++ + ++LG+GDRH +N M+ +G ++ IDFG F ++ PE +PFRLTR + M G S + ++ RS+ + M+ FV +P +W+ F Sbjct: 3881 DLLKRAFVRMSTSPEAFLALRSHFASSHALICISHWILGIGDRHLNNFMVAMETGGVIGIDFGHAFGSATQFLPVPELMPFRLTRQFINLMLPMKETGLMYSIMVHALRAFRSDPGLLTNTMDVFVKEPSFDWKNF 4016 The following BLAST results are available for this feature:
BLAST of FC868752 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 57
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Sequences
The
following sequences are available for this feature:
EST sequence >FC868752 ID=FC868752; Name=FC868752; organism=Citrus clementina; type=EST; length=725bpback to top |