FC868752

Overview
NameFC868752
Unique NameFC868752
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9385 contig Ccv1_Contig9385:1..725. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868752 vs. ExPASy Swiss-Prot
Match: ATR_CAEEL (Serine/threonine-protein kinase ATR OS=Caenorhabditis elegans GN=atl-1 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.086e-16
Identity = 42/98 (42.86%), Postives = 59/98 (60.20%), Query Frame = 3
Query:  195 WLERRTNYTRSLAVMSMVGYLLGLGDRHPSNLMLHRYSGKILHIDFGDCFEASMNREKFPEKVPFRLTRMLVKAMEVSGIEGNFRSTCENVMQVLRSN 488
            W   R  + +S AVMS++GY+ GLGDRH  NLM+H  +GK +H+DF   F         PE VPFRLT+ ++  M    ++G FR+ CE  ++V R N
Sbjct: 2346 WFASRKLFAKSTAVMSVIGYIFGLGDRHTKNLMVHT-TGKCIHVDFDMIFNKGETLGT-PELVPFRLTQNMINGMGEVALDGEFRTVCEQALRVFREN 2441          
BLAST of FC868752 vs. ExPASy Swiss-Prot
Match: PRKDC_CHICK (DNA-dependent protein kinase catalytic subunit OS=Gallus gallus GN=PRKDC PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.388e-16
Identity = 47/136 (34.56%), Postives = 80/136 (58.82%), Query Frame = 3
Query:  150 DLARVLWLKSRTS-EIWLERRTNYTRSLAVMSMVGYLLGLGDRHPSNLMLHRYSGKILHIDFGDCFEASMNREKFPEKVPFRLTRMLVKAMEVSGIEGNFRSTCENVMQVLRSNRDSVMAMMEAFVHDPLINWRLF 554
            DL R  ++K  TS E +L  R+++  S A+M +  ++LG+GDRH SN M+++ +G ++ IDFG  F ++      PE +PFRLTR  V  M      G   S   + ++  R++ D +++ M+ FV +P ++W+ F
Sbjct: 3887 DLLRRAFVKMSTSPEAFLALRSHFVSSHALMCVSHWILGIGDRHLSNFMINKETGGMVGIDFGHAFGSATQFLPVPELMPFRLTRQFVNLMMPVKEWGLIYSVMVHALRAYRADPDLLISTMDVFVKEPSLDWKNF 4022          
BLAST of FC868752 vs. ExPASy Swiss-Prot
Match: PRKDC_DICDI (DNA-dependent protein kinase catalytic subunit OS=Dictyostelium discoideum GN=dnapkcs PE=3 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 7.037e-16
Identity = 41/133 (30.83%), Postives = 70/133 (52.63%), Query Frame = 3
Query:  147 NDLARVLWLKSRTSEIWLERRTNYTRSLAVMSMVGYLLGLGDRHPSNLMLHRYSGKILHIDFGDCFEASMNREKFPEKVPFRLTRMLVKAMEVSGIEGNFRSTCENVMQVLRSNRDSVMAMMEAFVHDPLINW 545
            N L   +W  S + E +L  R ++ RSLA  S+  Y++G+GDRH  N ++ +  G+++ IDFG  F  +      PE +PFRLTR     +      G         +  L++ ++ ++  M+ FV +PL++W
Sbjct: 4054 NLLQNGIWSLSSSPESYLFIRNSFARSLASFSVCSYVIGIGDRHLENFLISQRDGRLIGIDFGHAFGTATQFLPIPELMPFRLTRQFTSFLRPLDSVGLLNHNMTYTLTALQNQKEILLTTMDVFVKEPLLDW 4186          
BLAST of FC868752 vs. ExPASy Swiss-Prot
Match: PRKDC_XENLA (DNA-dependent protein kinase catalytic subunit OS=Xenopus laevis GN=prkdc PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.190e-16
Identity = 45/134 (33.58%), Postives = 78/134 (58.21%), Query Frame = 3
Query:  150 DLARVLWLK-SRTSEIWLERRTNYTRSLAVMSMVGYLLGLGDRHPSNLMLHRYSGKILHIDFGDCFEASMNREKFPEKVPFRLTRMLVKAMEVSGIEGNFRSTCENVMQVLRSNRDSVMAMMEAFVHDPLINWR 548
            DL R  ++K S T E +L  R+++ RS A++ +  +++G+GDRH SN M++  +G ++ IDFG  F  +      PE +PFRLTR +V  M      G F S   + ++  RS+   ++  M+ F+ +P ++W+
Sbjct: 3899 DLLRRAFVKMSTTPEAFLSLRSHFARSHALLCVSHWIVGIGDRHLSNFMINMETGGMIGIDFGHAFGTATQFLPVPELMPFRLTRQIVNLMLPMKDSGLFDSVMVHSLRAYRSDPGLLVTTMDVFIKEPSLDWK 4032          
BLAST of FC868752 vs. ExPASy Swiss-Prot
Match: PRKDC_CANFA (DNA-dependent protein kinase catalytic subunit OS=Canis familiaris GN=PRKDC PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.123e-13
Identity = 44/136 (32.35%), Postives = 73/136 (53.68%), Query Frame = 3
Query:  150 DLARVLWLKSRTSEI-WLERRTNYTRSLAVMSMVGYLLGLGDRHPSNLMLHRYSGKILHIDFGDCFEASMNREKFPEKVPFRLTRMLVKAMEVSGIEGNFRSTCENVMQVLRSNRDSVMAMMEAFVHDPLINWRLF 554
            DL +  +LK  T    +L  R+++  S A+M +  ++LG+GDRH +N M+   +G ++ IDFG  F ++      PE +PFRLTR  +  M      G   S   + ++  RS+ D +   M+ FV +P  +W+ F
Sbjct: 3897 DLLKRAFLKMSTGPAAFLALRSHFASSHALMCISHWILGIGDRHLNNFMVSMETGGLIGIDFGHAFGSATQFLPVPELMPFRLTRQFINLMLPMKEAGVVYSIMVHALRAFRSHSDLLTNTMDVFVKEPSFDWKNF 4032          
BLAST of FC868752 vs. ExPASy Swiss-Prot
Match: PRKDC_MOUSE (DNA-dependent protein kinase catalytic subunit OS=Mus musculus GN=Prkdc PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.467e-13
Identity = 45/136 (33.09%), Postives = 73/136 (53.68%), Query Frame = 3
Query:  150 DLARVLWLKSRTS-EIWLERRTNYTRSLAVMSMVGYLLGLGDRHPSNLMLHRYSGKILHIDFGDCFEASMNREKFPEKVPFRLTRMLVKAMEVSGIEGNFRSTCENVMQVLRSNRDSVMAMMEAFVHDPLINWRLF 554
            DL +  ++K  TS E +L  R+++  S A++ +  +LLG+GDRH +N M+   +G ++ IDFG  F ++      PE +PFRLTR  V  M      G   +   + ++  RS    +   ME FV +P  +W+ F
Sbjct: 3881 DLLKRAFVKMSTSPEAFLALRSHFASSHALLCISHWLLGIGDRHLNNFMVAMETGSVIGIDFGHAFGSATQFLPVPELMPFRLTRQFVSLMLPMKETGLMCTVMVHALRAFRSCAGLLTDTMEIFVKEPSFDWKSF 4016          
BLAST of FC868752 vs. ExPASy Swiss-Prot
Match: PRKDC_HUMAN (DNA-dependent protein kinase catalytic subunit OS=Homo sapiens GN=PRKDC PE=1 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 7.282e-13
Identity = 42/136 (30.88%), Postives = 74/136 (54.41%), Query Frame = 3
Query:  150 DLARVLWLKSRTS-EIWLERRTNYTRSLAVMSMVGYLLGLGDRHPSNLMLHRYSGKILHIDFGDCFEASMNREKFPEKVPFRLTRMLVKAMEVSGIEGNFRSTCENVMQVLRSNRDSVMAMMEAFVHDPLINWRLF 554
            DL +  +++  TS E +L  R+++  S A++ +  ++LG+GDRH +N M+   +G ++ IDFG  F ++      PE +PFRLTR  +  M      G   S   + ++  RS+   +   M+ FV +P  +W+ F
Sbjct: 3881 DLLKRAFVRMSTSPEAFLALRSHFASSHALICISHWILGIGDRHLNNFMVAMETGGVIGIDFGHAFGSATQFLPVPELMPFRLTRQFINLMLPMKETGLMYSIMVHALRAFRSDPGLLTNTMDVFVKEPSFDWKNF 4016          
The following BLAST results are available for this feature:
BLAST of FC868752 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ATR_CAEEL1.086e-1642.86Serine/threonine-protein kinase ATR OS=Caenorhabdi... [more]
PRKDC_CHICK5.388e-1634.56DNA-dependent protein kinase catalytic subunit OS=... [more]
PRKDC_DICDI7.037e-1630.83DNA-dependent protein kinase catalytic subunit OS=... [more]
PRKDC_XENLA9.190e-1633.58DNA-dependent protein kinase catalytic subunit OS=... [more]
PRKDC_CANFA1.123e-1332.35DNA-dependent protein kinase catalytic subunit OS=... [more]
PRKDC_MOUSE1.467e-1333.09DNA-dependent protein kinase catalytic subunit OS=... [more]
PRKDC_HUMAN7.282e-1330.88DNA-dependent protein kinase catalytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionC31004D02EF AbioticL1 Citrus clementina cDNA clone C31004D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868752 ID=FC868752; Name=FC868752; organism=Citrus clementina; type=EST; length=725bp
ATCTTATTCGGGAATATAGGGATGCCCGAAAGATCACCTTAAACCAAGAG
CATAAATATATGCTAAGTTTTGCACCAGATTATGACCATTTGCCTCTCAT
AGCCAAAGTGGAAGTTTTTGAATATGCTCTACAAAATACTGAAGGGAATG
ATCTGGCCAGGGTGCTTTGGTTAAAAAGCCGTACTTCTGAAATATGGCTA
GAGAGGAGGACGAACTATACCAGAAGTTTAGCAGTGATGAGCATGGTTGG
ATACCTTCTTGGTTTAGGGGATCGGCACCCAAGTAATCTTATGCTGCACC
GCTATAGTGGGAAAATTTTACACATAGATTTTGGGGACTGCTTTGAAGCT
TCAATGAACCGGGAGAAGTTCCCTGAAAAGGTTCCTTTTCGCTTGACTAG
AATGCTTGTTAAAGCTATGGAGGTTAGTGGTATTGAGGGCAACTTCCGTT
CAACATGCGAAAATGTGATGCAAGTTCTGCGCTCAAATAGGGATAGTGTT
ATGGCTATGATGGAGGCCTTTGTTCATGATCCTCTCATCAATTGGCGTCT
TTTCAATTTTAATGAAGTACCGCAAATGTCAGTGTTTGCAAATACTCATG
TCCCTCCTGTTGTGAATGCCGAAGAAACTGCTCCAAATAGAGAACTTCCT
CAACCACAACGGGGTGCTCGTGAAAGGGAGCTTCTTCAGGCTGTTAATCA
ACTTGGTGATGCTAGTGAGGTTTTG
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