FC868753

Overview
NameFC868753
Unique NameFC868753
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length742
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868753 vs. ExPASy Swiss-Prot
Match: CUL4A_HUMAN (Cullin-4A OS=Homo sapiens GN=CUL4A PE=1 SV=3)

HSP 1 Score: 122.094 bits (305), Expect = 3.189e-27
Identity = 69/218 (31.65%), Postives = 116/218 (53.21%), Query Frame = 2
Query:   68 IEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYRNAYNMVLHKFGEKLYSGLVTTMTFHLTEICKSI--EAAQGGLFLEELNRKWADHNKALQMIRDILMYMDRTFIPSTHKTP-VHELGLNLWRDVVIHSSKIQTRLQDTLLELVQRERSGEVINRGLMRNITKMLMDLGSFVYQDDFEKHFLEVSADFYRLESQEFIESCDCGDYL 712
            I+ F+ R  +   Y + TW+ L  A+  + +  +   + EELY+   N+  HK    LY  L      H+         ++    LFL+++N  W DH + + MIR I +++DRT++      P + ++GL L+R  +I    +Q++  D +L L++RERSGE ++R L+R++  ML DL   VY+D FE  FLE +   Y  E Q  ++  +  +YL
Sbjct:   45 IKNFRDRPRLPDNYTQDTWRKLHEAVRAVQSSTSIRYNLEELYQAVENLCSHKVSPMLYKQLRQACEDHVQAQILPFREDSLDSVLFLKKINTCWQDHCRQMIMIRSIFLFLDRTYVLQNSTLPSIWDMGLELFRTHIISDKMVQSKTIDGILLLIERERSGEAVDRSLLRSLLGMLSDLQ--VYKDSFELKFLEETNCLYAAEGQRLMQEREVPEYL 260          
BLAST of FC868753 vs. ExPASy Swiss-Prot
Match: CUL4_DICDI (Cullin-4 OS=Dictyostelium discoideum GN=culD PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.932e-20
Identity = 65/229 (28.38%), Postives = 108/229 (47.16%), Query Frame = 2
Query:   47 PKKRTFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYRNAYNMVLHKF-GEKLYSGLVTTMTFHLTEICKSIEAAQGG---LFLEELNRKWADHNKALQMIRDILMYMDRTFIPSTHKT--PVHELGLNLWRDVVIHSSKIQTRLQDTLLELVQRERSGEVINRGLMRNITKMLMDLGSFVYQDDFEKHFLEVSADFYRLESQEFIESCDCGDYLK 715
            P K+   I+  K        Y + +W  L  AI  I    A+ L+ EELY+   N+   K     LY+ +   +  H+T   K +         +FL+ +N  W DH   + MIR I +Y+DRT++     T   + +LGL  + + +   S ++ +  D+LL  ++ ER G+ I+R L+ ++ KML  L  +     FE  F++ +  FY +E    I   +   YLK
Sbjct:   46 PAKKILVIKNLKQIPKTPDNYEDSSWNKLSSAITSINMKQATTLTQEELYKMVENLCFDKILASNLYNKISVQIEKHITLTIKHLVLTMSSDPIIFLKSINSIWKDHTNQMIMIRSIFLYLDRTYVIQNSNTVKSIWDLGLFYFGNNLSQQSNLERKTIDSLLYSIRCEREGDEIDRDLIHSLVKMLSSLNIYT---KFEIEFIKETNRFYDMEGNSKINEIETPMYLK 271          
BLAST of FC868753 vs. ExPASy Swiss-Prot
Match: CUL1_ARATH (Cullin-1 OS=Arabidopsis thaliana GN=CUL1 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.291e-17
Identity = 47/187 (25.13%), Postives = 99/187 (52.94%), Query Frame = 2
Query:  191 LYRNAYNMVL----HKFGEKLYSGLVTTMTFHLTE-ICKSIEAAQGGLFLEELNRKWADHNKALQMIRDILMYMDRTFIPSTHKTPVHELGLNLWRDVVIHSSKIQTRLQDTLLELVQRERSGEVINRGLMRNITKMLMDLGSFV---YQDDFEKHFLEVSADFYRLESQEFIESCDCGDYLKKLKD 727
            LY   YNM      H + ++LY         ++   +  ++        L EL ++W++H   ++ +     Y+DR FI      P++E+GL  +RD+V   +++ ++++  ++ LV +ER GE I+R L++N+  + +++G      Y++DFE   L+ ++ +Y  ++  +I+   C DY+ K ++
Sbjct:   42 LYTTIYNMCTQKPPHDYSQQLYDKYREAFEEYINSTVLPALREKHDEFMLRELFKRWSNHKVMVRWLSRFFYYLDRYFIARRSLPPLNEVGLTCFRDLVY--NELHSKVKQAVIALVDKEREGEQIDRALLKNVLDIYVEIGMGQMERYEEDFESFMLQDTSSYYSRKASSWIQEDSCPDYMLKSEE 226          
BLAST of FC868753 vs. ExPASy Swiss-Prot
Match: CUL1_DICDI (Cullin-1 OS=Dictyostelium discoideum GN=culA PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.177e-13
Identity = 52/181 (28.73%), Postives = 91/181 (50.28%), Query Frame = 2
Query:  230 GEKLYSGLVTTMTFHLTEICKSIEAAQGGLFLEELNRKWADHNKALQMIRDILMYMDRTFIP---STHKTPVHE---LGLNLWRDVVIHSSKIQTRLQDTLLELVQRERSGEVINRGLMRNITKMLMDLGSF----------VYQDDFEKHFLEVSADFYRLESQEFIESCDCGDYLKKLK 724
            GE LY+ L   +  H++++ K  E       L     +W  +  A++ I +I  YM+R +I       K  V+E   L L +WRD +   + ++ RL ++LL++++ ER+G  IN  L++ +    + LG            VY+  FE+ FL  + ++Y  ES +FI      DY+KK++
Sbjct:   78 GEDLYNRLNLFLKKHMSQLLKLTETKMDEPLLNYYYTEWDRYTSAMKYINNIFQYMNRYWIKREIDDGKKEVYEIFILSLVIWRDCLF--TPLKQRLTNSLLDIIESERNGYQINTHLIKGVINGYVSLGLNREKPKETILQVYKSGFEELFLTATENYYTNESAKFISENSVADYMKKVE 256          
BLAST of FC868753 vs. ExPASy Swiss-Prot
Match: CUL1_PONAB (Cullin-1 OS=Pongo abelii GN=CUL1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.438e-11
Identity = 56/248 (22.58%), Postives = 106/248 (42.74%), Query Frame = 2
Query:  113 EKTWKILEHAIHEIYNHNASGLS-FEELYRNAYNMV--LHK-------------------------FGEKLYSGLVTTMTFHLTEICKSIEAAQGGLFLEELNRKWADHNKALQMIRDILMYMDRTFIPSTHKT------PVHELGLNLWRDVVIHSSKIQTRLQDTLLELVQRERSGEVINRGLMRNITKMLMDLGS------------FVYQDDFEKHFLEVSADFYRLESQEFIESCDCGDYLKK 718
            ++ W  L   I ++Y   +   S + ELY + YN    +H+                          G +LY  L   +  +LT + K  E       L+   ++W D+  + +++  I  Y++R ++             ++ L L  WRD +     +  ++ + +L+L+++ER+GE IN  L+  + +  ++LG              VY++ FE  FL  +  FY  ES EF++     +Y+KK
Sbjct:   18 DQIWDDLRAGIQQVYTRQSMAKSRYMELYTHVYNYCTSVHQSNQARGAGVPPSKSKKGQTPGGAQFVGLELYKRLKEFLKNYLTNLLKDGEDLMDESVLKFYTQQWEDYRFSSKVLNGICAYLNRHWVRRECDEGRKGIYEIYSLALVTWRDCLFRP--LNKQVTNAVLKLIEKERNGETINTRLISGVVQSYVELGLNEDDAFAKGPTLTVYKESFESQFLADTERFYTRESTEFLQQNPVTEYMKK 263          
BLAST of FC868753 vs. ExPASy Swiss-Prot
Match: CUL1_MOUSE (Cullin-1 OS=Mus musculus GN=Cul1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.438e-11
Identity = 56/248 (22.58%), Postives = 106/248 (42.74%), Query Frame = 2
Query:  113 EKTWKILEHAIHEIYNHNASGLS-FEELYRNAYNMV--LHK-------------------------FGEKLYSGLVTTMTFHLTEICKSIEAAQGGLFLEELNRKWADHNKALQMIRDILMYMDRTFIPSTHKT------PVHELGLNLWRDVVIHSSKIQTRLQDTLLELVQRERSGEVINRGLMRNITKMLMDLGS------------FVYQDDFEKHFLEVSADFYRLESQEFIESCDCGDYLKK 718
            ++ W  L   I ++Y   +   S + ELY + YN    +H+                          G +LY  L   +  +LT + K  E       L+   ++W D+  + +++  I  Y++R ++             ++ L L  WRD +     +  ++ + +L+L+++ER+GE IN  L+  + +  ++LG              VY++ FE  FL  +  FY  ES EF++     +Y+KK
Sbjct:   18 DQIWDDLRAGIQQVYTRQSMAKSRYMELYTHVYNYCTSVHQSNQARGAGVPPSKSKKGQTPGGAQFVGLELYKRLKEFLKNYLTNLLKDGEDLMDESVLKFYTQQWEDYRFSSKVLNGICAYLNRHWVRRECDEGRKGIYEIYSLALVTWRDCLFRP--LNKQVTNAVLKLIEKERNGETINTRLISGVVQSYVELGLNEDDAFAKGPTLTVYKESFESQFLADTERFYTRESTEFLQQNPVTEYMKK 263          
BLAST of FC868753 vs. ExPASy Swiss-Prot
Match: CUL1_HUMAN (Cullin-1 OS=Homo sapiens GN=CUL1 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.438e-11
Identity = 56/248 (22.58%), Postives = 106/248 (42.74%), Query Frame = 2
Query:  113 EKTWKILEHAIHEIYNHNASGLS-FEELYRNAYNMV--LHK-------------------------FGEKLYSGLVTTMTFHLTEICKSIEAAQGGLFLEELNRKWADHNKALQMIRDILMYMDRTFIPSTHKT------PVHELGLNLWRDVVIHSSKIQTRLQDTLLELVQRERSGEVINRGLMRNITKMLMDLGS------------FVYQDDFEKHFLEVSADFYRLESQEFIESCDCGDYLKK 718
            ++ W  L   I ++Y   +   S + ELY + YN    +H+                          G +LY  L   +  +LT + K  E       L+   ++W D+  + +++  I  Y++R ++             ++ L L  WRD +     +  ++ + +L+L+++ER+GE IN  L+  + +  ++LG              VY++ FE  FL  +  FY  ES EF++     +Y+KK
Sbjct:   18 DQIWDDLRAGIQQVYTRQSMAKSRYMELYTHVYNYCTSVHQSNQARGAGVPPSKSKKGQTPGGAQFVGLELYKRLKEFLKNYLTNLLKDGEDLMDESVLKFYTQQWEDYRFSSKVLNGICAYLNRHWVRRECDEGRKGIYEIYSLALVTWRDCLFRP--LNKQVTNAVLKLIEKERNGETINTRLISGVVQSYVELGLNEDDAFAKGPTLTVYKESFESQFLADTERFYTRESTEFLQQNPVTEYMKK 263          
The following BLAST results are available for this feature:
BLAST of FC868753 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
CUL4A_HUMAN3.189e-2731.65Cullin-4A OS=Homo sapiens GN=CUL4A PE=1 SV=3[more]
CUL4_DICDI4.932e-2028.38Cullin-4 OS=Dictyostelium discoideum GN=culD PE=3 ... [more]
CUL1_ARATH2.291e-1725.13Cullin-1 OS=Arabidopsis thaliana GN=CUL1 PE=1 SV=1[more]
CUL1_DICDI1.177e-1328.73Cullin-1 OS=Dictyostelium discoideum GN=culA PE=1 ... [more]
CUL1_PONAB1.438e-1122.58Cullin-1 OS=Pongo abelii GN=CUL1 PE=2 SV=1[more]
CUL1_MOUSE1.438e-1122.58Cullin-1 OS=Mus musculus GN=Cul1 PE=1 SV=1[more]
CUL1_HUMAN1.438e-1122.58Cullin-1 OS=Homo sapiens GN=CUL1 PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC31004D03EF AbioticL1 Citrus clementina cDNA clone C31004D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868753 ID=FC868753; Name=FC868753; organism=Citrus clementina; type=EST; length=742bp
GAACTAAAAGAAAGCGAGTGTGAGCGATTGAGAAGAGATGAGTGCTCCGA
AGAAGAGGACTTTCCAAATAGAGGCGTTTAAGCACCGGGTCGTGGTGGAT
CCAAAATACGCAGAGAAGACATGGAAGATTTTGGAGCATGCGATTCATGA
GATTTACAATCATAACGCCAGTGGGCTTAGCTTTGAGGAGCTTTATAGGA
ATGCCTACAACATGGTGCTGCACAAATTTGGTGAGAAACTTTACTCTGGA
CTTGTGACAACAATGACTTTTCATCTCACAGAAATATGCAAATCAATTGA
AGCTGCTCAGGGGGGTCTATTTTTGGAAGAGCTGAACAGGAAATGGGCAG
ATCATAACAAGGCTTTGCAAATGATCCGGGACATATTGATGTACATGGAT
AGGACATTCATCCCAAGCACCCATAAAACCCCTGTACATGAGCTAGGGTT
AAATCTGTGGAGGGATGTTGTTATACACTCCAGCAAAATCCAGACTAGGC
TACAGGATACACTTCTTGAACTTGTGCAGAGAGAAAGGAGTGGTGAAGTT
ATAAACAGGGGCTTGATGAGAAACATTACAAAAATGCTGATGGATTTAGG
TTCTTTTGTTTACCAGGATGACTTTGAGAAGCATTTCCTCGAAGTCTCAG
CTGATTTTTACCGTCTCGAGTCTCAAGAGTTTATTGAGTCCTGTGATTGT
GGAGATTATCTTAAGAAGCTGAAAGACGTCTAAATGAGGAAA
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