FC868756

Overview
NameFC868756
Unique NameFC868756
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length715
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC868756 vs. ExPASy Swiss-Prot
Match: ATKB_ECOL6 (Potassium-transporting ATPase B chain OS=Escherichia coli O6 GN=kdpB PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.438e-21
Identity = 54/141 (38.30%), Postives = 81/141 (57.45%), Query Frame = 1 
Query:  292 RKLLNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIA 714
            R+ +  +G   P  V+  V ++     T ++V     ++GV+ + D VK         L KMG++ VM+TGDN  TA A+A E G+ D +A+  P  K   +R +Q +G +VAM GDG ND+PALA ADV +A+ +GT  A
Sbjct:  402 RRHVEANGGHFPADVDQKVDQVARQGATPLVVVEGSRVLGVIALKDIVKGGIKERFAQLRKMGIKTVMITGDNRLTAAAIAAEAGVDDFLAEATPEAKLALIRQYQAEGRLVAMTGDGTNDAPALAQADVAVAMNSGTQAA 542
[Close]
BLAST of FC868756 vs. ExPASy Swiss-Prot
Match: ATKB_ECOL5 (Potassium-transporting ATPase B chain OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=kdpB PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.438e-21
Identity = 54/141 (38.30%), Postives = 81/141 (57.45%), Query Frame = 1 
Query:  292 RKLLNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIA 714
            R+ +  +G   P  V+  V ++     T ++V     ++GV+ + D VK         L KMG++ VM+TGDN  TA A+A E G+ D +A+  P  K   +R +Q +G +VAM GDG ND+PALA ADV +A+ +GT  A
Sbjct:  402 RRHVEANGGHFPADVDQKVDQVARQGATPLVVVEGSRVLGVIALKDIVKGGIKERFAQLRKMGIKTVMITGDNRLTAAAIAAEAGVDDFLAEATPEAKLALIRQYQAEGRLVAMTGDGTNDAPALAQADVAVAMNSGTQAA 542
[Close]
BLAST of FC868756 vs. ExPASy Swiss-Prot
Match: ATKB_ECOK1 (Potassium-transporting ATPase B chain OS=Escherichia coli O1:K1 / APEC GN=kdpB PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.438e-21
Identity = 54/141 (38.30%), Postives = 81/141 (57.45%), Query Frame = 1 
Query:  292 RKLLNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIA 714
            R+ +  +G   P  V+  V ++     T ++V     ++GV+ + D VK         L KMG++ VM+TGDN  TA A+A E G+ D +A+  P  K   +R +Q +G +VAM GDG ND+PALA ADV +A+ +GT  A
Sbjct:  402 RRHVEANGGHFPADVDQKVDQVARQGATPLVVVEGSRVLGVIALKDIVKGGIKERFAQLRKMGIKTVMITGDNRLTAAAIAAEAGVDDFLAEATPEAKLALIRQYQAEGRLVAMTGDGTNDAPALAQADVAVAMNSGTQAA 542
[Close]
BLAST of FC868756 vs. ExPASy Swiss-Prot
Match: ATKB_ECOHS (Potassium-transporting ATPase B chain OS=Escherichia coli O9:H4 (strain HS) GN=kdpB PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.438e-21
Identity = 54/141 (38.30%), Postives = 81/141 (57.45%), Query Frame = 1 
Query:  292 RKLLNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIA 714
            R+ +  +G   P  V+  V ++     T ++V     ++GV+ + D VK         L KMG++ VM+TGDN  TA A+A E G+ D +A+  P  K   +R +Q +G +VAM GDG ND+PALA ADV +A+ +GT  A
Sbjct:  402 RRHVEANGGHFPADVDQKVDQVARQGATPLVVVEGSRVLGVIALKDIVKGGIKERFAQLRKMGIKTVMITGDNRLTAAAIAAEAGVDDFLAEATPEAKLALIRQYQAEGRLVAMTGDGTNDAPALAQADVAVAMNSGTQAA 542
[Close]
BLAST of FC868756 vs. ExPASy Swiss-Prot
Match: ATKB_ECO81 (Potassium-transporting ATPase B chain OS=Escherichia coli O81 (strain ED1a) GN=kdpB PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.438e-21
Identity = 54/141 (38.30%), Postives = 81/141 (57.45%), Query Frame = 1 
Query:  292 RKLLNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIA 714
            R+ +  +G   P  V+  V ++     T ++V     ++GV+ + D VK         L KMG++ VM+TGDN  TA A+A E G+ D +A+  P  K   +R +Q +G +VAM GDG ND+PALA ADV +A+ +GT  A
Sbjct:  402 RRHVEANGGHFPADVDQKVDQVARQGATPLVVVEGSRVLGVIALKDIVKGGIKERFAQLRKMGIKTVMITGDNRLTAAAIAAEAGVDDFLAEATPEAKLALIRQYQAEGRLVAMTGDGTNDAPALAQADVAVAMNSGTQAA 542
[Close]
BLAST of FC868756 vs. ExPASy Swiss-Prot
Match: ATKB_ECO7I (Potassium-transporting ATPase B chain OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=kdpB PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.438e-21
Identity = 54/141 (38.30%), Postives = 81/141 (57.45%), Query Frame = 1 
Query:  292 RKLLNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIA 714
            R+ +  +G   P  V+  V ++     T ++V     ++GV+ + D VK         L KMG++ VM+TGDN  TA A+A E G+ D +A+  P  K   +R +Q +G +VAM GDG ND+PALA ADV +A+ +GT  A
Sbjct:  402 RRHVEANGGHFPADVDQKVDQVARQGATPLVVVEGSRVLGVIALKDIVKGGIKERFAQLRKMGIKTVMITGDNRLTAAAIAAEAGVDDFLAEATPEAKLALIRQYQAEGRLVAMTGDGTNDAPALAQADVAVAMNSGTQAA 542
[Close]
BLAST of FC868756 vs. ExPASy Swiss-Prot
Match: ATKB_ECO5E (Potassium-transporting ATPase B chain OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=kdpB PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.438e-21
Identity = 54/141 (38.30%), Postives = 81/141 (57.45%), Query Frame = 1 
Query:  292 RKLLNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIA 714
            R+ +  +G   P  V+  V ++     T ++V     ++GV+ + D VK         L KMG++ VM+TGDN  TA A+A E G+ D +A+  P  K   +R +Q +G +VAM GDG ND+PALA ADV +A+ +GT  A
Sbjct:  402 RRHVEANGGHFPADVDQKVDQVARQGATPLVVVEGSRVLGVIALKDIVKGGIKERFAQLRKMGIKTVMITGDNRLTAAAIAAEAGVDDFLAEATPEAKLALIRQYQAEGRLVAMTGDGTNDAPALAQADVAVAMNSGTQAA 542
[Close]
BLAST of FC868756 vs. ExPASy Swiss-Prot
Match: ATKB_ECO57 (Potassium-transporting ATPase B chain OS=Escherichia coli O157:H7 GN=kdpB PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.438e-21
Identity = 54/141 (38.30%), Postives = 81/141 (57.45%), Query Frame = 1 
Query:  292 RKLLNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIA 714
            R+ +  +G   P  V+  V ++     T ++V     ++GV+ + D VK         L KMG++ VM+TGDN  TA A+A E G+ D +A+  P  K   +R +Q +G +VAM GDG ND+PALA ADV +A+ +GT  A
Sbjct:  402 RRHVEANGGHFPADVDQKVDQVARQGATPLVVVEGSRVLGVIALKDIVKGGIKERFAQLRKMGIKTVMITGDNRLTAAAIAAEAGVDDFLAEATPEAKLALIRQYQAEGRLVAMTGDGTNDAPALAQADVAVAMNSGTQAA 542
[Close]
BLAST of FC868756 vs. ExPASy Swiss-Prot
Match: ATKB_ECO45 (Potassium-transporting ATPase B chain OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=kdpB PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.438e-21
Identity = 54/141 (38.30%), Postives = 81/141 (57.45%), Query Frame = 1 
Query:  292 RKLLNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIA 714
            R+ +  +G   P  V+  V ++     T ++V     ++GV+ + D VK         L KMG++ VM+TGDN  TA A+A E G+ D +A+  P  K   +R +Q +G +VAM GDG ND+PALA ADV +A+ +GT  A
Sbjct:  402 RRHVEANGGHFPADVDQKVDQVARQGATPLVVVEGSRVLGVIALKDIVKGGIKERFAQLRKMGIKTVMITGDNRLTAAAIAAEAGVDDFLAEATPEAKLALIRQYQAEGRLVAMTGDGTNDAPALAQADVAVAMNSGTQAA 542
[Close]
BLAST of FC868756 vs. ExPASy Swiss-Prot
Match: ATKB_ECO27 (Potassium-transporting ATPase B chain OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=kdpB PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.438e-21
Identity = 54/141 (38.30%), Postives = 81/141 (57.45%), Query Frame = 1 
Query:  292 RKLLNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIA 714
            R+ +  +G   P  V+  V ++     T ++V     ++GV+ + D VK         L KMG++ VM+TGDN  TA A+A E G+ D +A+  P  K   +R +Q +G +VAM GDG ND+PALA ADV +A+ +GT  A
Sbjct:  402 RRHVEANGGHFPADVDQKVDQVARQGATPLVVVEGSRVLGVIALKDIVKGGIKERFAQLRKMGIKTVMITGDNRLTAAAIAAEAGVDDFLAEATPEAKLALIRQYQAEGRLVAMTGDGTNDAPALAQADVAVAMNSGTQAA 542
The following BLAST results are available for this feature:
BLAST of FC868756 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 258
Match NameE-valueIdentityDescription
ATKB_ECOL62.438e-2138.30Potassium-transporting ATPase B chain OS=Escherich... [more]
ATKB_ECOL52.438e-2138.30Potassium-transporting ATPase B chain OS=Escherich... [more]
ATKB_ECOK12.438e-2138.30Potassium-transporting ATPase B chain OS=Escherich... [more]
ATKB_ECOHS2.438e-2138.30Potassium-transporting ATPase B chain OS=Escherich... [more]
ATKB_ECO812.438e-2138.30Potassium-transporting ATPase B chain OS=Escherich... [more]
ATKB_ECO7I2.438e-2138.30Potassium-transporting ATPase B chain OS=Escherich... [more]
ATKB_ECO5E2.438e-2138.30Potassium-transporting ATPase B chain OS=Escherich... [more]
ATKB_ECO572.438e-2138.30Potassium-transporting ATPase B chain OS=Escherich... [more]
ATKB_ECO452.438e-2138.30Potassium-transporting ATPase B chain OS=Escherich... [more]
ATKB_ECO272.438e-2138.30Potassium-transporting ATPase B chain OS=Escherich... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31004D06EF AbioticL1 Citrus clementina cDNA clone C31004D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868756 ID=FC868756; Name=FC868756; organism=Citrus clementina; type=EST; length=715bp
GGGAGAGCTACTGTTACAACTGCTAAGGTTTTCACGAAAATGGATCGTGG
TGAATTTCTTACATTGGTGGCTTCAGCAGAGGCTAGCAGTGAACATCCAT
TGGCCAAAGCAGTTGTGGAGTATGCACGTCATTTCCATTTCTTTGATGAT
CCCTCTTTGAACCCCGATGGCCAAAGCCACAGCAAAGAGTCCACTGGTTC
TGGATGGCTTCTTGATGTCTCGGATTTCTCTGCTCTGCCTGGAAGAGGTA
TCCAGTGCTTTATAAGTGGAAAACAGGTTTTGGTGGGTAACCGGAAGTTG
CTGAATGAAAGTGGAATCACCATTCCAGACCATGTAGAAAGTTTTGTTGT
GGAACTGGAGGAAAGTGCTAGGACGGGCATACTTGTTGCGTATGATGATA
ACTTGATCGGTGTTATGGGAATTGCTGACCCAGTTAAGAGGGAAGCTGCT
GTAGTTGTAGAGGGCCTTTTAAAAATGGGTGTGAGACCCGTCATGGTAAC
TGGAGATAATTGGAGGACAGCGCATGCTGTTGCTAGAGAGATCGGCATTC
AAGATGTGATGGCAGATGTAATGCCAGCAGGAAAAGCTGATGCCGTCCGC
TCATTTCAGAAAGACGGAAGCATAGTAGCTATGGTTGGGGATGGAATCAA
TGATTCTCCAGCTCTAGCTGCGGCTGATGTTGGTATGGCTATTGGGGCAG
GTACAGATATTGCCA
back to top