FC868756

Overview
NameFC868756
Unique NameFC868756
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length715
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868756 vs. ExPASy Swiss-Prot
Match: ATKB_MYCTU (Potassium-transporting ATPase B chain OS=Mycobacterium tuberculosis GN=kdpB PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.304e-18
Identity = 55/145 (37.93%), Postives = 82/145 (56.55%), Query Frame = 1
Query:  295 KLLNESGITIPDHVESFVVELEESARTGILVA-YDDN----LIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIA 714
            K + + G    + V + V  +     T ++VA + DN     IGV+ + D VK       + + +M +R VM+TGDN  TA A+A+E G+ D +A+  P  K   ++  Q+ G +VAM GDG ND+PALA ADVG+A+  GT  A
Sbjct:  425 KWVRDHGGHPTEEVGAIVDGISSGGGTPLVVAEWTDNSSARAIGVVHLKDIVKVGIRERFDEMRRMSIRTVMITGDNPATAKAIAQEAGVDDFLAEATPEDKLALIKREQQGGRLVAMTGDGTNDAPALAQADVGVAMNTGTQAA 569          
BLAST of FC868756 vs. ExPASy Swiss-Prot
Match: ATKB_MYCBO (Potassium-transporting ATPase B chain OS=Mycobacterium bovis GN=kdpB PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.304e-18
Identity = 55/145 (37.93%), Postives = 82/145 (56.55%), Query Frame = 1
Query:  295 KLLNESGITIPDHVESFVVELEESARTGILVA-YDDN----LIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIA 714
            K + + G    + V + V  +     T ++VA + DN     IGV+ + D VK       + + +M +R VM+TGDN  TA A+A+E G+ D +A+  P  K   ++  Q+ G +VAM GDG ND+PALA ADVG+A+  GT  A
Sbjct:  425 KWVRDHGGHPTEEVGAIVDGISSGGGTPLVVAEWTDNSSARAIGVVHLKDIVKVGIRERFDEMRRMSIRTVMITGDNPATAKAIAQEAGVDDFLAEATPEDKLALIKREQQGGRLVAMTGDGTNDAPALAQADVGVAMNTGTQAA 569          
BLAST of FC868756 vs. ExPASy Swiss-Prot
Match: COPA3_HELPY (Copper-transporting ATPase OS=Helicobacter pylori GN=copA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.621e-18
Identity = 67/237 (28.27%), Postives = 116/237 (48.95%), Query Frame = 1
Query:   28 VFTKMDRGEFLTLVASAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFISGKQVL-VGNRKLLNESGITIPDHVESFVVELEESARTGILVAY-------DDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIA 714
            V +K++  E L+L  S E SSEH +AK +VEYA+      + +      S  K  TG G +   +D+  +           K+++ VGN +  N              +E++E+   GILV         +D L+GV  + D  K+     +  +  +G+   +++GDN       A E+GI   +++  P  K + ++  ++ G IV MVGDG+ND+P+LA  DV + +  G+D++
Sbjct:  450 VHSKIELLELLSLAGSIEKSSEHVIAKGIVEYAK------ERNAPLKEMSEVKVKTGFG-ISAKTDYQGI-----------KEIIKVGNSEFFNPIN----------TLEIKEN---GILVFVGRAISEKEDELLGVFVLEDLPKKGVKEHIAQIKNLGINTFLLSGDNRENVKKCALELGIDGYISNAKPQDKLNKIKELKEQGQIVMMVGDGLNDAPSLAMNDVAVVMAKGSDVS 655          
BLAST of FC868756 vs. ExPASy Swiss-Prot
Match: COPA_HELPJ (Copper-transporting ATPase OS=Helicobacter pylori J99 GN=copA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.587e-18
Identity = 64/232 (27.59%), Postives = 110/232 (47.41%), Query Frame = 1
Query:   52 EFLTLVASAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFIS---GKQVL-VGNRKLLNESGITIPDHVESFVVELEESARTGILVAY-------DDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIA 714
            E L+L +S E SSEH +AK +VEYA+                       +  L D+S+     G GI   +     K+++ VGN +  N              +E++E+   GILV         +D L+G   + D  K+     +  +  +G+   +++GDN       A E+GI   +++  P  K + ++  ++ G IV MVGDG+ND+P+LA +DV + +  G+D++
Sbjct:  458 ELLSLASSIEKSSEHVIAKGIVEYAKE---------------------RNAPLKDISEVKVKTGFGISAKVDYQGAKEIIKVGNSEFFNPIN----------TLEIKEN---GILVFVGRAINEKEDELLGAFVLEDLPKKGVKEHIAQIKNLGINTFLLSGDNRENVKKCALELGIDGYISNAKPQDKLNKIKELKEKGRIVMMVGDGLNDAPSLAMSDVAVVMAKGSDVS 655          
BLAST of FC868756 vs. ExPASy Swiss-Prot
Match: COPA1_HELPY (Copper-transporting ATPase OS=Helicobacter pylori GN=copA PE=3 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.252e-17
Identity = 66/240 (27.50%), Postives = 114/240 (47.50%), Query Frame = 1
Query:   28 VFTKMDRGEFLTLVASAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQC---FISGKQVL-VGNRKLLNESGITIPDHVESFVVELEESARTGILVAY-------DDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIA 714
            V +K++  E L+L  S E SSEH +AK +VEYA+  +                       L ++S+     G GI     +   K+++ VGN +  N              +E++E+   GILV         +D L+G   + D  K+     V  +  +G+   +++GDN       A E+GI   +++  P  K + ++  ++ G IV MVGDG+ND+P+LA +DV + +  G+D++
Sbjct:  450 VHSKIELLELLSLANSIEKSSEHVIAKGIVEYAKEHN---------------------APLKEMSEVKVKTGFGISAKTDYQGTKEIIKVGNSEFFNPIN----------TLEIQEN---GILVLVGRAINEKEDELLGAFVLEDLPKKGVKEHVAQIKNLGINTFLLSGDNRENVKKCALELGIDGYISNAKPQDKLNKIKELKEKGRIVMMVGDGLNDAPSLAMSDVAVVMAKGSDVS 655          
BLAST of FC868756 vs. ExPASy Swiss-Prot
Match: ATKB_BACCN (Potassium-transporting ATPase B chain OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=kdpB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.136e-17
Identity = 48/131 (36.64%), Postives = 76/131 (58.02%), Query Frame = 1
Query:  322 IPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIA 714
            IP  +      + +   T + VA  + + G++ + D VK       E L +MG++ +M TGDN  TA  +A+E G+ + +A+  P  K   +++ Q+ G +VAM GDG ND+PALA ADVG+A+ +GT  A
Sbjct:  429 IPTDLHQKADLIAKEGGTPLAVAAGNRIFGLIYLKDTVKPGMRERFEQLRQMGIKTMMCTGDNPLTAATIAKEAGVDEFVAECKPEDKIAVIKAEQELGKLVAMTGDGTNDAPALAQADVGLAMNSGTAAA 559          
BLAST of FC868756 vs. ExPASy Swiss-Prot
Match: COPA_HELPY (Copper-transporting ATPase OS=Helicobacter pylori GN=copA PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.643e-17
Identity = 65/236 (27.54%), Postives = 113/236 (47.88%), Query Frame = 1
Query:   28 VFTKMDRGEFLTLVASAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFISGKQVLVGNRKLLNESGITIPDHVESFVVELEESARTGILVAY-------DDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIA 714
            V +K++  E L+L  S E SSEH +AK +VEYA+  +    P     G    K  TG G                   IS K    G ++++        + + +  +E++E+   GILV         +D L+G   + D  K+     +  +  +G+   +++GDN       A E+GI   +++  P  K + ++  ++ G IV MVGDG+ND+P+LA +DV + +  G+D++
Sbjct:  450 VHSKIELLELLSLALSIEKSSEHVIAKGIVEYAKEHNA---PLKEMSGV---KVKTGFG-------------------ISAKTDYQGTKEIIKVGNSEFFNPINT--LEIKEN---GILVFVGRAISEKEDELLGAFVLEDLPKKGVKEHIAQIKNLGINTFLLSGDNRENVQKCAFELGIDGYISNAKPQDKLNKIKELKEKGQIVMMVGDGLNDAPSLAMSDVAVVMAKGSDVS 655          
BLAST of FC868756 vs. ExPASy Swiss-Prot
Match: ATKB_THEVO (Potassium-transporting ATPase B chain OS=Thermoplasma volcanium GN=kdpB PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.261e-16
Identity = 49/146 (33.56%), Postives = 78/146 (53.42%), Query Frame = 1
Query:  277 VLVGNRKLLNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIA 714
            V+ G+ K L E      + +E+   E+     T I V ++    GV+ + D +K      +  +  M ++ VM TGD+  TA  ++ + GI + +A+  P  K + V   ++   +VAMVGDG ND+PALA ADVG+A+  GT  A
Sbjct:  383 VIKGSLKALKEKFQVADEFIEALCKEISMRGGTAIPVVHNGKFAGVIELQDLIKPGIKERISEIKNMDIKTVMCTGDDEVTAQYISAQAGIDEYIANSKPVDKYNVVIREKEGQRMVAMVGDGTNDAPALAKADVGLAMNNGTQAA 528          
BLAST of FC868756 vs. ExPASy Swiss-Prot
Match: Y290_HAEIN (Probable cation-transporting ATPase HI0290 OS=Haemophilus influenzae GN=HI0290 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.871e-16
Identity = 57/216 (26.39%), Postives = 102/216 (47.22%), Query Frame = 1
Query:   70 ASAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALP-GRGIQCFISGKQVLVGNRKLLNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIA 714
            A+ E  + HP+AKA+V+ A      +   L       SK   G G   ++     +  G+   C                  G+ +P ++E           + + V+ +D  IG   + D +K ++   ++ L +  +  V+++GD       +A+++GI+     + P  KA+ ++  +  G IVAMVGDGIND+PALA+A+V  A+ + +DIA
Sbjct:  455 AAVERQANHPIAKAIVQAA------EXKMLEIPTALFSKMEVGQGIQAELEQVGTIKVGKPDYC------------------GLILPKNLEDIW-----QIASIVAVSINDEPIGAFALTDTLKNDSLHAIQRLQQQNIDVVIMSGDQQSVVDYIAKQLGIKKAFGKLTPRDKAEQIQKLKDLGHIVAMVGDGINDAPALASANVSFAMKSSSDIA 641          
BLAST of FC868756 vs. ExPASy Swiss-Prot
Match: ATKB_THEAC (Potassium-transporting ATPase B chain OS=Thermoplasma acidophilum GN=kdpB PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.453e-15
Identity = 46/146 (31.51%), Postives = 78/146 (53.42%), Query Frame = 1
Query:  277 VLVGNRKLLNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIA 714
            ++ G+   L E      + +E+   E+     T I V ++    GV+ + D +K      +  +  M ++ VM TGD+  TA  ++ ++G+ + +A+  P  K + V   ++   +VAMVGDG ND+PALA ADVG+A+  GT  A
Sbjct:  380 IIKGSLHALKEKFHVADEFIEALCKEISMRGGTAIPVVHNGKFAGVIELQDLIKPGIKERIAEIKNMDIKTVMCTGDDEVTAQYISAQVGLDEYIANSKPIDKYNVVIREKERQRMVAMVGDGTNDAPALAKADVGLAMNNGTQAA 525          
The following BLAST results are available for this feature:
BLAST of FC868756 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 258
Match NameE-valueIdentityDescription
ATKB_MYCTU4.304e-1837.93Potassium-transporting ATPase B chain OS=Mycobacte... [more]
ATKB_MYCBO4.304e-1837.93Potassium-transporting ATPase B chain OS=Mycobacte... [more]
COPA3_HELPY5.621e-1828.27Copper-transporting ATPase OS=Helicobacter pylori ... [more]
COPA_HELPJ9.587e-1827.59Copper-transporting ATPase OS=Helicobacter pylori ... [more]
COPA1_HELPY1.252e-1727.50Copper-transporting ATPase OS=Helicobacter pylori ... [more]
ATKB_BACCN2.136e-1736.64Potassium-transporting ATPase B chain OS=Bacillus ... [more]
COPA_HELPY3.643e-1727.54Copper-transporting ATPase OS=Helicobacter pylori ... [more]
ATKB_THEVO5.261e-1633.56Potassium-transporting ATPase B chain OS=Thermopla... [more]
Y290_HAEIN6.871e-1626.39Probable cation-transporting ATPase HI0290 OS=Haem... [more]
ATKB_THEAC4.453e-1531.51Potassium-transporting ATPase B chain OS=Thermopla... [more]

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Properties
Property NameValue
Genbank descriptionC31004D06EF AbioticL1 Citrus clementina cDNA clone C31004D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868756 ID=FC868756; Name=FC868756; organism=Citrus clementina; type=EST; length=715bp
GGGAGAGCTACTGTTACAACTGCTAAGGTTTTCACGAAAATGGATCGTGG
TGAATTTCTTACATTGGTGGCTTCAGCAGAGGCTAGCAGTGAACATCCAT
TGGCCAAAGCAGTTGTGGAGTATGCACGTCATTTCCATTTCTTTGATGAT
CCCTCTTTGAACCCCGATGGCCAAAGCCACAGCAAAGAGTCCACTGGTTC
TGGATGGCTTCTTGATGTCTCGGATTTCTCTGCTCTGCCTGGAAGAGGTA
TCCAGTGCTTTATAAGTGGAAAACAGGTTTTGGTGGGTAACCGGAAGTTG
CTGAATGAAAGTGGAATCACCATTCCAGACCATGTAGAAAGTTTTGTTGT
GGAACTGGAGGAAAGTGCTAGGACGGGCATACTTGTTGCGTATGATGATA
ACTTGATCGGTGTTATGGGAATTGCTGACCCAGTTAAGAGGGAAGCTGCT
GTAGTTGTAGAGGGCCTTTTAAAAATGGGTGTGAGACCCGTCATGGTAAC
TGGAGATAATTGGAGGACAGCGCATGCTGTTGCTAGAGAGATCGGCATTC
AAGATGTGATGGCAGATGTAATGCCAGCAGGAAAAGCTGATGCCGTCCGC
TCATTTCAGAAAGACGGAAGCATAGTAGCTATGGTTGGGGATGGAATCAA
TGATTCTCCAGCTCTAGCTGCGGCTGATGTTGGTATGGCTATTGGGGCAG
GTACAGATATTGCCA
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