FC868756

Overview
NameFC868756
Unique NameFC868756
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length715
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868756 vs. ExPASy Swiss-Prot
Match: COPA_ECOLI (Copper-exporting P-type ATPase A OS=Escherichia coli (strain K12) GN=copA PE=1 SV=4)

HSP 1 Score: 156.762 bits (395), Expect = 1.089e-37
Identity = 88/238 (36.97%), Postives = 133/238 (55.88%), Query Frame = 1
Query:    1 GRATVTTAKVFTKMDRGEFLTLVASAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFISGKQVLVGNRKLLNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIA 714
            G+  V   K F  +D  + L L A+ E  S HPLA+A+++ A                       G   L  V+ F  L G G+     G  +L+GN+ LLNE  +     +E+ +        T +L+A D   + ++ + DP++ ++   ++ L K G R VM+TGDN  TA+A+A+E GI +V+A V+P GKA+A++  Q +G  VAMVGDGIND+PALA ADVG+A+G G+D+A
Sbjct:  531 GKPQVVAVKTFADVDEAQALRLAAALEQGSSHPLARAILDKA-----------------------GDMQLPQVNGFRTLRGLGVSGEAEGHALLLGNQALLNEQQVGTKA-IEAEITAQASQGATPVLLAVDGKAVALLAVRDPLRSDSVAALQRLHKAGYRLVMLTGDNPTTANAIAKEAGIDEVIAGVLPDGKAEAIKHLQSEGRQVAMVGDGINDAPALAQADVGIAMGGGSDVA 744          
BLAST of FC868756 vs. ExPASy Swiss-Prot
Match: ATCU1_RHIME (Copper-transporting ATPase 1 OS=Rhizobium meliloti GN=actP1 PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.423e-37
Identity = 94/241 (39.00%), Postives = 135/241 (56.02%), Query Frame = 1
Query:    1 GRATVTTAKVFTKMDRGEFLTLVASAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFISGKQVLVGNRKLLNESGITIPDHVESFVVELEESARTG---ILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIA 714
            GR  +T        +  E L+ VAS EA SEHP+A+A+V  A+                    S G   L+  +DF A PG G++  +SG  V VG  +  +  GI     V  FVVE E    +G   +  A D  L  ++ ++DP+K      ++ L  +G++  M+TGDN RTA A+AR++GI +V+A+V+P GK DAV+  ++ G  VA +GDGIND+PAL  ADVG+A+G GTDIA
Sbjct:  522 GRPELTDIVPADGFEADEVLSFVASLEALSEHPIAEAIVSAAK--------------------SRGIA-LVPATDFEATPGFGVRGAVSGLPVQVGADRAFSGVGID----VSPFVVEAERLGNSGKSPLYAAIDGRLAAIIAVSDPIKDTTPQAIKALHDLGLKVAMITGDNRRTADAIARQLGIDEVVAEVLPDGKVDAVKRLREGGRKVAFIGDGINDAPALTEADVGIAVGTGTDIA 737          
BLAST of FC868756 vs. ExPASy Swiss-Prot
Match: COPA_ECO57 (Copper-exporting P-type ATPase A OS=Escherichia coli O157:H7 GN=copA PE=3 SV=3)

HSP 1 Score: 153.68 bits (387), Expect = 9.222e-37
Identity = 86/238 (36.13%), Postives = 131/238 (55.04%), Query Frame = 1
Query:    1 GRATVTTAKVFTKMDRGEFLTLVASAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFISGKQVLVGNRKLLNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIA 714
            G+  V   K F   D  + L L A+ E  S HPLA+A+++ A                           L  V+ F  L G G+     G  +L+GN+ LLN+  +     +E+ +        T +L+A D   + ++ + DP++ ++   ++ L K G R VM+TGDN  TA+A+A+E GI +V+A V+P GKA+A++  Q +G  VAMVGDGIND+PALA ADVG+A+G G+D+A
Sbjct:  531 GKPQVVAVKTFADFDEAQALRLAAALEQGSSHPLARAILDKASDMQ-----------------------LPQVNGFRTLRGLGVSGEAEGHALLLGNQALLNDQQVDTKA-IEADISAQASQGATPVLLAVDGKAVALLAVRDPLRSDSVAALQRLHKAGYRLVMLTGDNPTTANAIAKEAGIDEVIAGVLPDGKAEAIKRLQSEGRQVAMVGDGINDAPALAQADVGIAMGGGSDVA 744          
BLAST of FC868756 vs. ExPASy Swiss-Prot
Match: ATP7A_MOUSE (Copper-transporting ATPase 1 OS=Mus musculus GN=Atp7a PE=1 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 1.573e-36
Identity = 100/283 (35.34%), Postives = 147/283 (51.94%), Query Frame = 1
Query:    1 GRATVTTAKVFT---KMDRGEFLTLVASAEASSEHPLAKAVVEYARHFHFFDDPSL-------------------NPDGQSHS-----------------------KESTGSGWLLDVSDFSALPGRGIQCFISGKQVLVGNRKLLNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIA 714
            G   V   KV     K+ R + L +V +AE++SEHPL  AV +Y +     D  +L                   N +G  H                        + ST S  ++D    +A+  +  +       VL+GNR+ +  +G+ I + V+  ++E E   RT +LV  DD L G++ IAD VK EA + V  L  MG+  V++TGDN +TA ++A ++GI  V A+V+P+ K   V+  Q++G  VAMVGDGINDSPALA A+VG+AIG GTD+A
Sbjct: 1043 GTPVVNQVKVLVESNKISRNKILAIVGTAESNSEHPLGAAVTKYCKKE--LDTETLGTCTDFQVVPGCGISCKVTNIEGLLHKSNLKIEENNIKNASLVQIDAINEQSSTSSSMIIDAHLSNAVNTQQYK-------VLIGNREWMIRNGLVISNDVDESMIEHERRGRTAVLVTIDDELCGLIAIADTVKPEAELAVHILKSMGLEVVLMTGDNSKTARSIASQVGITKVFAEVLPSHKVAKVKQLQEEGKRVAMVGDGINDSPALAMANVGIAIGTGTDVA 1316          
BLAST of FC868756 vs. ExPASy Swiss-Prot
Match: ATCU_RHILV (Copper-transporting P-type ATPase OS=Rhizobium leguminosarum bv. viciae GN=actP PE=1 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.573e-36
Identity = 88/238 (36.97%), Postives = 130/238 (54.62%), Query Frame = 1
Query:    1 GRATVTTAKVFTKMDRGEFLTLVASAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFISGKQVLVGNRKLLNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIA 714
            G+  +T    F ++     L+L AS E  SEHPLA+A+V  A                    E  G  ++ +V+ F A  G+G+Q    G  V +GN  +L + GI  P  +      L    +T + V +D  L G++ +AD +K   A  ++ L   G++ +M TGDN RTA AVA+ +GI +V ADV+P GK   +   +  G+I+AM GDG+ND+PALAAADVG+A+G G D+A
Sbjct:  538 GKPKLTDIAAFGRVGEDRLLSLAASLERGSEHPLAEAIVSGA--------------------EERGVPFV-EVTGFEAKTGKGVQGIADGTMVALGNSAMLADLGID-PAALSEKTEALRGDGKTVMFVVFDGALAGLVAVADRIKPTTAAAIQALHDSGLKIIMATGDNERTARAVAKSLGIDEVRADVLPEGKKALIDELRSKGAIIAMAGDGVNDAPALAAADVGIAMGTGADVA 753          
BLAST of FC868756 vs. ExPASy Swiss-Prot
Match: ATP7A_RAT (Copper-transporting ATPase 1 OS=Rattus norvegicus GN=Atp7a PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.054e-36
Identity = 100/276 (36.23%), Postives = 144/276 (52.17%), Query Frame = 1
Query:    1 GRATVTTAKVFT---KMDRGEFLTLVASAEASSEHPLAKAVVEYARHFHFFDDPSL-------------------NPDGQSHSKE--------STGSGWLLDVSDFSALPGRG--IQCFISGK------QVLVGNRKLLNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIA 714
            G   V   KV     K+ R + L +V +AE++SEHPL  AV +Y +     D  +L                   N +G  H              S   +D  +  + P     I   +S        +VL+GNR+ +  +G+ I + V+  ++E E   RT +LV  DD L G++ IAD VK EA + V  L  MG+  V++TGDN +TA ++A ++GI  V A+V+P+ K   V+  Q++G  VAMVGDGINDSPALA A VG+AIG GTD+A
Sbjct: 1044 GTPVVNQVKVLVESNKISRNKILAIVGTAESNSEHPLGAAVTKYCKQE--LDTETLGTCTDFQVVPGCGISCKVTNIEGLLHKSNLKIEENNIKNASLVQIDAINEQSSPSSSMIIDAHLSNAVNTQQYKVLIGNREWMIRNGLVISNDVDESMIEHERRGRTAVLVTIDDELCGLIAIADTVKPEAELAVHILKSMGLEVVLMTGDNSKTARSIASQVGITKVFAEVLPSHKVAKVKQLQEEGKRVAMVGDGINDSPALAMASVGIAIGTGTDVA 1317          
BLAST of FC868756 vs. ExPASy Swiss-Prot
Match: COPA_VIBCH (Copper-exporting P-type ATPase A OS=Vibrio cholerae GN=copA PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.504e-36
Identity = 86/224 (38.39%), Postives = 132/224 (58.93%), Query Frame = 1
Query:   43 DRGEFLTLVASAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFISGKQVLVGNRKLLNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIA 714
            D  + L L  + E  SEHPLAKA+ +YA+        +++P               +++S F+   GRG+      + VLVG+   + E GI +    ES + +    A T + VAY   L GV+ IADP+K  +A  V  L ++G+  VM+TGD+   A+A+A+E+GI  V+A V+P  KA  +++ Q+ G  VAM+GDGIND+PALA AD+G+A+G+G+D+A
Sbjct:  619 DENQLLALAYALEQQSEHPLAKAICDYAKQ------RNISP---------------VEISQFTNQRGRGLLADYQNQTVLVGSLAFMQEQGIDL-SMAESTLEKFAAQAWTPVAVAYRGMLQGVLAIADPIKPTSAQAVRKLNELGIHTVMLTGDHTSVANAIAKELGISQVIAQVLPDQKAQHIQALQQQGRKVAMIGDGINDAPALALADIGIAMGSGSDVA 820          
BLAST of FC868756 vs. ExPASy Swiss-Prot
Match: ATCS_SYNE7 (Cation-transporting ATPase pacS OS=Synechococcus elongatus (strain PCC 7942) GN=pacS PE=3 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 1.020e-35
Identity = 94/227 (41.41%), Postives = 133/227 (58.59%), Query Frame = 1
Query:   43 DRGEFLTLV---ASAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFISGKQVLVGNRKLLNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIA 714
            DR +  TL+   AS E  SEHPLA+A+V Y                     E+ G   L  V+DF A+PG G+Q  + G  + +G ++ L E GI     +++   + E + +T + VA D +L  ++ IAD +K  +  VV  L ++G++ VM+TGDN RTA A+A+ +GI  V+A+V P  KA  V   Q  G +VAMVGDGIND+PALA ADVG+AIG GTD+A
Sbjct:  454 DRDQQQTLLGWAASLENYSEHPLAEAIVRYG--------------------EAQGIT-LSTVTDFEAIPGSGVQGQVEGIWLQIGTQRWLGELGIET-SALQNQWEDWEAAGKTVVGVAADGHLQAILSIADQLKPSSVAVVRSLQRLGLQVVMLTGDNRRTADAIAQAVGITQVLAEVRPDQKAAQVAQLQSRGQVVAMVGDGINDAPALAQADVGIAIGTGTDVA 658          
BLAST of FC868756 vs. ExPASy Swiss-Prot
Match: ATCS_SYNY3 (Cation-transporting ATPase pacS OS=Synechocystis sp. (strain PCC 6803) GN=pacS PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.332e-35
Identity = 95/243 (39.09%), Postives = 134/243 (55.14%), Query Frame = 1
Query:    1 GRATVTTAKVFTKMDRGEFLTLV---ASAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFISGKQVLVGNRKLLNESGITIPDHV--ESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIA 714
            G+ +VT     +     E L L+   AS E  SEHPLA+AVV Y               GQS          LL++ +F A+ G G+     G+ + +G    L + G+T  +H   +S   + E+  +T I +A D  +  ++ IAD +K  +  VV+ L K+G+   M+TGDN  TA A+A  +GI+ V+A V P  KA  V   Q+ G+IVAMVGDGIND+PALA ADVG+AIG GTD+A
Sbjct:  436 GKPSVTNFFTLSPTSTEESLQLIQWAASVEQYSEHPLAEAVVNY---------------GQSQQVS------LLEIDNFQAIAGCGVAGQWQGQWIRLGTSNWLTDLGVTGTEHQPWQSQAQQWEKEQKTVIWLAVDTEVKALLAIADAIKPSSPQVVQALKKLGLSVYMLTGDNQATAQAIADTVGIRHVLAQVRPGDKAQQVEQLQQKGNIVAMVGDGINDAPALAQADVGIAIGTGTDVA 657          
BLAST of FC868756 vs. ExPASy Swiss-Prot
Match: COPA_BACSU (Copper-exporting P-type ATPase A OS=Bacillus subtilis GN=copA PE=1 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 1.739e-35
Identity = 90/240 (37.50%), Postives = 134/240 (55.83%), Query Frame = 1
Query:    1 GRATVTTAKVFTKMDRGEFLTLVASAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFISGKQVLVGNRKLLNESGITIPDH--VESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIA 714
            G+  +T A  F + +  + L   A+AE  SEHPL +A++   +      D  L                +  ++ F A  G GI     GK +LVG RKL+    +   +H  + + + ELE   +T +LV+ D    G++ +AD +K  +   V  L ++G+  +M+TGDN RTA A+A+E GI +++A+V+P  KA  +   QK+G   AMVGDGIND+PALA AD+GMAIG GTDIA
Sbjct:  507 GKPRLTDAIPFGRFEEKDLLQFAAAAETGSEHPLGEAIIAGVK------DKGLE---------------IPKLTRFEAKVGAGILAEAGGKSILVGTRKLMESEQV---EHGALLAQMEELEAEGKTVMLVSIDGEAAGLVAVADTIKDTSRKAVARLKELGLDVIMMTGDNRRTAEAIAKEAGIANIIAEVLPEQKAAEIARLQKEGRQTAMVGDGINDAPALATADIGMAIGTGTDIA 722          
The following BLAST results are available for this feature:
BLAST of FC868756 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 258
Match NameE-valueIdentityDescription
COPA_ECOLI1.089e-3736.97Copper-exporting P-type ATPase A OS=Escherichia co... [more]
ATCU1_RHIME1.423e-3739.00Copper-transporting ATPase 1 OS=Rhizobium meliloti... [more]
COPA_ECO579.222e-3736.13Copper-exporting P-type ATPase A OS=Escherichia co... [more]
ATP7A_MOUSE1.573e-3635.34Copper-transporting ATPase 1 OS=Mus musculus GN=At... [more]
ATCU_RHILV1.573e-3636.97Copper-transporting P-type ATPase OS=Rhizobium leg... [more]
ATP7A_RAT2.054e-3636.23Copper-transporting ATPase 1 OS=Rattus norvegicus ... [more]
COPA_VIBCH3.504e-3638.39Copper-exporting P-type ATPase A OS=Vibrio cholera... [more]
ATCS_SYNE71.020e-3541.41Cation-transporting ATPase pacS OS=Synechococcus e... [more]
ATCS_SYNY31.332e-3539.09Cation-transporting ATPase pacS OS=Synechocystis s... [more]
COPA_BACSU1.739e-3537.50Copper-exporting P-type ATPase A OS=Bacillus subti... [more]

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Properties
Property NameValue
Genbank descriptionC31004D06EF AbioticL1 Citrus clementina cDNA clone C31004D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868756 ID=FC868756; Name=FC868756; organism=Citrus clementina; type=EST; length=715bp
GGGAGAGCTACTGTTACAACTGCTAAGGTTTTCACGAAAATGGATCGTGG
TGAATTTCTTACATTGGTGGCTTCAGCAGAGGCTAGCAGTGAACATCCAT
TGGCCAAAGCAGTTGTGGAGTATGCACGTCATTTCCATTTCTTTGATGAT
CCCTCTTTGAACCCCGATGGCCAAAGCCACAGCAAAGAGTCCACTGGTTC
TGGATGGCTTCTTGATGTCTCGGATTTCTCTGCTCTGCCTGGAAGAGGTA
TCCAGTGCTTTATAAGTGGAAAACAGGTTTTGGTGGGTAACCGGAAGTTG
CTGAATGAAAGTGGAATCACCATTCCAGACCATGTAGAAAGTTTTGTTGT
GGAACTGGAGGAAAGTGCTAGGACGGGCATACTTGTTGCGTATGATGATA
ACTTGATCGGTGTTATGGGAATTGCTGACCCAGTTAAGAGGGAAGCTGCT
GTAGTTGTAGAGGGCCTTTTAAAAATGGGTGTGAGACCCGTCATGGTAAC
TGGAGATAATTGGAGGACAGCGCATGCTGTTGCTAGAGAGATCGGCATTC
AAGATGTGATGGCAGATGTAATGCCAGCAGGAAAAGCTGATGCCGTCCGC
TCATTTCAGAAAGACGGAAGCATAGTAGCTATGGTTGGGGATGGAATCAA
TGATTCTCCAGCTCTAGCTGCGGCTGATGTTGGTATGGCTATTGGGGCAG
GTACAGATATTGCCA
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