FC868756

Overview
NameFC868756
Unique NameFC868756
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length715
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868756 vs. ExPASy Swiss-Prot
Match: COPA_ENTHR (Probable copper-importing P-type ATPase A OS=Enterococcus hirae GN=copA PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.874e-35
Identity = 86/223 (38.57%), Postives = 125/223 (56.05%), Query Frame = 1
Query:   52 EFLTLVASAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFISGKQVLVGNRKLLNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQD--VMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIA 714
            E ++L  S E +SEHPL KA+V Y         P                     ++DF A PG GI   I+G     G RK L E  ++  D  +   +ELE++ +T + +A ++ ++G++ +AD +K +A   +E L + GV   MVTGDN R A A+ +++GI    + A+V+P  KA+ V   QK G  V MVGDGIND+PAL  ADVG+A+G+GTDIA
Sbjct:  445 EIISLFYSLEHASEHPLGKAIVAYGAKVGAKTQP---------------------ITDFVAHPGAGISGTINGVHYFAGTRKRLAEMNLSF-DEFQEQALELEQAGKTVMFLANEEQVLGMIAVADQIKEDAKQAIEQLQQKGVDVFMVTGDNQRAAQAIGKQVGIDSDHIFAEVLPEEKANYVEKLQKAGKKVGMVGDGINDAPALRLADVGIAMGSGTDIA 645          
BLAST of FC868756 vs. ExPASy Swiss-Prot
Match: ATP7A_CRIGR (Copper-transporting ATPase 1 (Fragment) OS=Cricetulus griseus GN=ATP7A PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.127e-34
Identity = 94/275 (34.18%), Postives = 142/275 (51.64%), Query Frame = 1
Query:    1 GRATVTTAKVFT---KMDRGEFLTLVASAEASSEHPLAKAVVEYARHFHFFDDPSL-------------------NPDGQSHS------KESTGSGWLLDVSDFSALPGRGIQCFISGK----------QVLVGNRKLLNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDI 711
            G   V   KV     K+ R + L +V +AE++SEHPL  AV +Y +     D  +L                   N +G  H       + +T +  L+ +   +          I             +VL+GNR+ +  +G+ I + V+  +++     R  +LV  DD L G++ IAD VK EA + V  L  MG+  V++TGDN +TA ++A ++GI  V A+V+P+ K   V+  Q++G  VAMVGDGINDSPALA A+VG+AIG GTD+
Sbjct: 1042 GTPVVNQVKVLVESNKIPRSKILAIVGTAESNSEHPLGAAVTKYCKQE--LDTETLGTCTDFQVVPGCGISCKVTNIEGLLHKSNLKIEENNTKNASLVQIDAINEQSSTSSSMIIDAPLSNAVDTQQYKVLIGNREWMIRNGLVISNDVDDSMIDHGRKGRPAVLVTIDDELCGLIAIADTVKPEAELAVHILKSMGLEVVLMTGDNSKTARSIASQVGITKVFAEVLPSHKVAKVKQLQEEGKRVAMVGDGINDSPALAMANVGIAIGTGTDV 1314          
BLAST of FC868756 vs. ExPASy Swiss-Prot
Match: COPA_ARCFU (Probable copper-exporting P-type ATPase A OS=Archaeoglobus fulgidus GN=copA PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.923e-34
Identity = 81/224 (36.16%), Postives = 132/224 (58.93%), Query Frame = 1
Query:   43 DRGEFLTLVASAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFISGKQVLVGNRKLLNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIA 714
            D  E L L A AE  SEHP+A+A+V+ A                 H  E      L +      + G G+        +LVGN++L+ + G+ + + VE  + +LE  A+T ++VA +  + G++ ++D +K  A   V+ L +MG++  M+TGDNWR+A A++RE+ +  V+A+V+P  K++ V+  Q    +VA VGDGIND+PALA AD+G+A+G+G+D+A
Sbjct:  445 DERELLRLAAIAERRSEHPIAEAIVKKALE---------------HGIE------LGEPEKVEVIAGEGVVA----DGILVGNKRLMEDFGVAVSNEVELALEKLEREAKTAVIVARNGRVEGIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNLDLVIAEVLPHQKSEEVKKLQAK-EVVAFVGDGINDAPALAQADLGIAVGSGSDVA 642          
BLAST of FC868756 vs. ExPASy Swiss-Prot
Match: COPB_ARCFU (Probable copper-exporting P-type ATPase B OS=Archaeoglobus fulgidus GN=copB PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.284e-34
Identity = 88/238 (36.97%), Postives = 137/238 (57.56%), Query Frame = 1
Query:    1 GRATVTTAKVFTKMDRGEFLTLVASAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFISGKQVLVGNRKLLNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIA 714
            GR  VT    F   +  E L + AS EA SEHP+A A+VE A                    E  G G L +V +F A+PG+G++  ++G++ +V +   + E GI   + VE    +L++  +T + +  +  + GV+ +AD ++ E+   +  L  +G++ +M+TGDN   A  VA E+G+ D  A+V+P  KA+ V+  Q+   + AMVGDG+ND+PALA ADVG+AIGAGTD+A
Sbjct:  397 GRFGVTDIVGFNHSE-DELLQIAASLEARSEHPIAAAIVEEA--------------------EKRGFG-LTEVEEFRAIPGKGVEGIVNGRRYMVVSPGYIRELGIKTDESVE----KLKQQGKTVVFILKNGEVSGVIALADRIRPESREAISKLKAIGIKCMMLTGDNRFVAKWVAEELGLDDYFAEVLPHEKAEKVKEVQQK-YVTAMVGDGVNDAPALAQADVGIAIGAGTDVA 607          
BLAST of FC868756 vs. ExPASy Swiss-Prot
Match: SILP_SALTY (Putative cation-transporting P-type ATPase OS=Salmonella typhimurium GN=silP PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.246e-33
Identity = 86/238 (36.13%), Postives = 129/238 (54.20%), Query Frame = 1
Query:    1 GRATVTTAKVFTKMDRGEFLTLVASAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFISGKQVLVGNRKLLNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIA 714
            G  TVT             L + A+ +  S+HPL  AVV+ A+                          +  V+ F+A  G+G+   + G++V++GN   + E+ I I D+ ++    L     T I VA D +L G++ I+DPVK      ++ L + G+R VM+TGDN  TA AVAR++GI +V A ++P GK   +   +  G +VAM GDG+ND+PALAAADVG+A+G GTD+A
Sbjct:  519 GSPTVTGIISLNPGGETSLLRVTAAVDKGSQHPLGMAVVKAAQEKGIA---------------------IPAVTHFNAPSGKGVSGDVEGQRVVIGNELAMQENSIVI-DNQKAVADTLRMEGTTVIYVATDGHLAGLIAISDPVKATTPDALKALRQAGIRIVMLTGDNQLTAEAVARKLGIDEVEAGILPDGKKAVITRLKASGHVVAMAGDGVNDAPALAAADVGIAMGTGTDVA 734          
BLAST of FC868756 vs. ExPASy Swiss-Prot
Match: CTPA_MYCTU (Cation-transporting P-type ATPase A OS=Mycobacterium tuberculosis GN=ctpA PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 8.079e-33
Identity = 86/238 (36.13%), Postives = 122/238 (51.26%), Query Frame = 1
Query:    1 GRATVTTAKVFTKMDRGEFLTLVASAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFISGKQVLVGNRKLLNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIA 714
            GR  V+        +  + L L A+ EA+SEH +A A+             +   D                V+DF A+PGRG+   +SG+ V VG    +  S  +   ++ +     E    T + V  D    GV+ +AD VK  A   V  L   G+R +++TGDN  +A AVA  +GI +V+AD++P GK D +   +  G +VAMVGDGIND PALA AD+GMAIG GTD+A
Sbjct:  451 GRLQVSAVTAAPGWEADQVLALAATVEAASEHSVALAIAA----------ATTRRDA---------------VTDFRAIPGRGVSGTVSGRAVRVGKPSWIGSS--SCHPNMRAARRHAESLGETAVFVEVDGEPCGVIAVADAVKDSARDAVAALADRGLRTMLLTGDNPESAAAVATRVGIDEVIADILPEGKVDVIEQLRDRGHVVAMVGDGINDGPALARADLGMAIGRGTDVA 661          
BLAST of FC868756 vs. ExPASy Swiss-Prot
Match: COPA_YERPE (Copper-exporting P-type ATPase A OS=Yersinia pestis GN=copA PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.070e-32
Identity = 83/238 (34.87%), Postives = 127/238 (53.36%), Query Frame = 1
Query:    1 GRATVTTAKVFTKMDRGEFLTLVASAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFISGKQVLVGNRKLLNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIA 714
            G   V     F  +   + L   A+ E  S HPLA+A+++ A                           L   S F  L G G+   + G  +L+GN +LL E  I   + ++S + +  ES  T +++  +     ++ I DP++ ++   ++ L ++G   VM+TGDN  TA+A+A+E GI  V+A V+P GKADA++  Q  G  VAM+GDGIND+PALA ADVG+A+G G+DIA
Sbjct:  658 GHPQVVAIHTFNGVSEQQALGWAAALETGSNHPLARAILQRAEGLT-----------------------LATASQFRTLRGLGVSGEVDGIPLLLGNNRLLEEQQIDTRE-LQSLIQQQAESGATPVILTANGKPAALLSIRDPLREDSIGALQRLHQLGYSLVMLTGDNPITANAIAKEAGIDRVIAGVLPDGKADAIKQLQAAGHKVAMIGDGINDAPALAQADVGIAMGGGSDIA 871          
BLAST of FC868756 vs. ExPASy Swiss-Prot
Match: CTPC_MYCTU (Probable cation-transporting P-type ATPase C OS=Mycobacterium tuberculosis GN=ctpC PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.932e-32
Identity = 89/241 (36.93%), Postives = 126/241 (52.28%), Query Frame = 1
Query:    1 GRATVTTAKVFTK-MDRGEFLTLVASAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFISGKQVLVGNRKLLNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRP-VMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIG-AGTDIA 714
            GR  VT      K  +  + L   AS+E  S HPLA+AV+           P                       +   L G G++ +  G+ +L+G+  LL    + +      +V +L   A T +L+A D  L+G++ + D V+ EAA V+  L   G+R  VM+TGD+   A  VA E+GI +  A+VMP  K  AVR  Q DG +V MVGDGIND+PALAAAD+G+A+G AGTD+A
Sbjct:  416 GRPVVTNIVAMHKDWEPEQVLAYAASSEIHSRHPLAEAVIRSTEERRISIPPH---------------------EECEVLVGLGMRTWADGRTLLLGSPSLLRAEKVRVSKKASEWVDKLRRQAETPLLLAVDGTLVGLISLRDEVRPEAAQVLTKLRANGIRRIVMLTGDHPEIAQVVADELGIDEWRAEVMPEDKLAAVRELQDDGYVVGMVGDGINDAPALAAADIGIAMGLAGTDVA 635          
BLAST of FC868756 vs. ExPASy Swiss-Prot
Match: CTPC_MYCBO (Probable cation-transporting P-type ATPase C OS=Mycobacterium bovis GN=ctpC PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.932e-32
Identity = 89/241 (36.93%), Postives = 126/241 (52.28%), Query Frame = 1
Query:    1 GRATVTTAKVFTK-MDRGEFLTLVASAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFISGKQVLVGNRKLLNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRP-VMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIG-AGTDIA 714
            GR  VT      K  +  + L   AS+E  S HPLA+AV+           P                       +   L G G++ +  G+ +L+G+  LL    + +      +V +L   A T +L+A D  L+G++ + D V+ EAA V+  L   G+R  VM+TGD+   A  VA E+GI +  A+VMP  K  AVR  Q DG +V MVGDGIND+PALAAAD+G+A+G AGTD+A
Sbjct:  416 GRPVVTNIVAMHKDWEPEQVLAYAASSEIHSRHPLAEAVIRSTEERRISIPPH---------------------EECEVLVGLGMRTWADGRTLLLGSPSLLRAEKVRVSKKASEWVDKLRRQAETPLLLAVDGTLVGLISLRDEVRPEAAQVLTKLRANGIRRIVMLTGDHPEIAQVVADELGIDEWRAEVMPEDKLAAVRELQDDGYVVGMVGDGINDAPALAAADIGIAMGLAGTDVA 635          
BLAST of FC868756 vs. ExPASy Swiss-Prot
Match: COPB_STAAU (Probable copper-transporting P-type ATPase B OS=Staphylococcus aureus GN=copB PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.394e-31
Identity = 80/239 (33.47%), Postives = 131/239 (54.81%), Query Frame = 1
Query:    1 GRATVTTAKVFT-KMDRGEFLTLVASAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFISGKQVLVGNRKLLNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREIGIQDVMADVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIA 714
            G  +V   + FT +++  E L+L AS E++S HPLA  +V++A+             G++ S  +          + + +PG G++  +  K++ + N   L++S     D+ +     L +   +   + +D  +IG++   D +K  +  +V  LL   + PVM+TGDN   A  VA E+GI DV A +MP  K   ++ +Q +GS + MVGDGIND+P+L  AD+GMAIGAGTD+A
Sbjct:  373 GNFSVNHYESFTDELNNEEILSLFASLESNSNHPLATGIVDFAK-------------GKNISYATP--------QEVNNIPGVGLEGTVDNKKLKIVNVSYLDKSNF---DYNKEQFTNLAQQGNSISYLIHDRQVIGIIAQGDKIKESSKQMVSDLLSRNITPVMLTGDNKEVAQTVAEELGISDVHAQLMPEDKESIIQDYQSNGSKIMMVGDGINDAPSLIRADIGMAIGAGTDVA 587          
The following BLAST results are available for this feature:
BLAST of FC868756 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 258
Match NameE-valueIdentityDescription
COPA_ENTHR3.874e-3538.57Probable copper-importing P-type ATPase A OS=Enter... [more]
ATP7A_CRIGR1.127e-3434.18Copper-transporting ATPase 1 (Fragment) OS=Cricetu... [more]
COPA_ARCFU1.923e-3436.16Probable copper-exporting P-type ATPase A OS=Archa... [more]
COPB_ARCFU4.284e-3436.97Probable copper-exporting P-type ATPase B OS=Archa... [more]
SILP_SALTY1.246e-3336.13Putative cation-transporting P-type ATPase OS=Salm... [more]
CTPA_MYCTU8.079e-3336.13Cation-transporting P-type ATPase A OS=Mycobacteri... [more]
COPA_YERPE3.070e-3234.87Copper-exporting P-type ATPase A OS=Yersinia pesti... [more]
CTPC_MYCTU8.932e-3236.93Probable cation-transporting P-type ATPase C OS=My... [more]
CTPC_MYCBO8.932e-3236.93Probable cation-transporting P-type ATPase C OS=My... [more]
COPB_STAAU3.394e-3133.47Probable copper-transporting P-type ATPase B OS=St... [more]

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Properties
Property NameValue
Genbank descriptionC31004D06EF AbioticL1 Citrus clementina cDNA clone C31004D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868756 ID=FC868756; Name=FC868756; organism=Citrus clementina; type=EST; length=715bp
GGGAGAGCTACTGTTACAACTGCTAAGGTTTTCACGAAAATGGATCGTGG
TGAATTTCTTACATTGGTGGCTTCAGCAGAGGCTAGCAGTGAACATCCAT
TGGCCAAAGCAGTTGTGGAGTATGCACGTCATTTCCATTTCTTTGATGAT
CCCTCTTTGAACCCCGATGGCCAAAGCCACAGCAAAGAGTCCACTGGTTC
TGGATGGCTTCTTGATGTCTCGGATTTCTCTGCTCTGCCTGGAAGAGGTA
TCCAGTGCTTTATAAGTGGAAAACAGGTTTTGGTGGGTAACCGGAAGTTG
CTGAATGAAAGTGGAATCACCATTCCAGACCATGTAGAAAGTTTTGTTGT
GGAACTGGAGGAAAGTGCTAGGACGGGCATACTTGTTGCGTATGATGATA
ACTTGATCGGTGTTATGGGAATTGCTGACCCAGTTAAGAGGGAAGCTGCT
GTAGTTGTAGAGGGCCTTTTAAAAATGGGTGTGAGACCCGTCATGGTAAC
TGGAGATAATTGGAGGACAGCGCATGCTGTTGCTAGAGAGATCGGCATTC
AAGATGTGATGGCAGATGTAATGCCAGCAGGAAAAGCTGATGCCGTCCGC
TCATTTCAGAAAGACGGAAGCATAGTAGCTATGGTTGGGGATGGAATCAA
TGATTCTCCAGCTCTAGCTGCGGCTGATGTTGGTATGGCTATTGGGGCAG
GTACAGATATTGCCA
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