FC868758

Overview
NameFC868758
Unique NameFC868758
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868758 vs. ExPASy Swiss-Prot
Match: ARF6_CHICK (ADP-ribosylation factor 6 OS=Gallus gallus GN=ARF6 PE=2 SV=3)

HSP 1 Score: 106.686 bits (265), Expect = 1.267e-22
Identity = 47/64 (73.44%), Postives = 54/64 (84.38%), Query Frame = 1
Query:  496 GFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSE 687
            GFNVETV YKNV F VWDVGGQDKIRPLWRHY+  T GLIFVVD  DR+RI EA+ ELHR++++
Sbjct:   46 GFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIIND 109          

HSP 2 Score: 71.2478 bits (173), Expect = 5.898e-12
Identity = 36/49 (73.47%), Postives = 42/49 (85.71%), Query Frame = 1
Query:   88 MGMVISRLKMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG 234
            MG V+S++   F  KEMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+G
Sbjct:    1 MGKVLSKI---FGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVG 46          
BLAST of FC868758 vs. ExPASy Swiss-Prot
Match: ARF3_DROME (ADP-ribosylation factor 3 OS=Drosophila melanogaster GN=Arf51F PE=2 SV=3)

HSP 1 Score: 106.301 bits (264), Expect = 1.654e-22
Identity = 47/64 (73.44%), Postives = 54/64 (84.38%), Query Frame = 1
Query:  496 GFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSE 687
            GFNVETV YKNV F VWDVGGQDKIRPLWRHY+  T GLIFVVD  DR+RI EA+ ELHR++++
Sbjct:   46 GFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARTELHRIIND 109          

HSP 2 Score: 70.0922 bits (170), Expect = 1.314e-11
Identity = 35/49 (71.43%), Postives = 42/49 (85.71%), Query Frame = 1
Query:   88 MGMVISRLKMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG 234
            MG ++S++   F  KEMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+G
Sbjct:    1 MGKLLSKI---FGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVG 46          
BLAST of FC868758 vs. ExPASy Swiss-Prot
Match: ARF_GIALA (ADP-ribosylation factor OS=Giardia lamblia PE=3 SV=3)

HSP 1 Score: 104.375 bits (259), Expect = 6.287e-22
Identity = 48/66 (72.73%), Postives = 56/66 (84.85%), Query Frame = 1
Query:  496 GFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRE--RIGEAKDELHRMLSE 687
            GFNVETVEYKN++FTVWDVGGQD IRPLWRHY+QNT  LI+V+DS D E  RI +AK+ELH +L E
Sbjct:   50 GFNVETVEYKNINFTVWDVGGQDSIRPLWRHYYQNTDALIYVIDSADLEPKRIEDAKNELHTLLGE 115          

HSP 2 Score: 70.4774 bits (171), Expect = 1.006e-11
Identity = 33/39 (84.62%), Postives = 38/39 (97.44%), Query Frame = 1
Query:  118 LFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG 234
            LF++KE+RILMVGLDAAGKTTILYKL LGE+VTT+PTIG
Sbjct:   12 LFSKKEVRILMVGLDAAGKTTILYKLMLGEVVTTVPTIG 50          
BLAST of FC868758 vs. ExPASy Swiss-Prot
Match: ARD1_MOUSE (GTP-binding protein ARD-1 OS=Mus musculus GN=Trim23 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.506e-20
Identity = 41/64 (64.06%), Postives = 54/64 (84.38%), Query Frame = 1
Query:  496 GFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSE 687
            GFNVETVEYKN+ FT+WDVGG+ K+RPLW+HY+ NT  ++FVVDS+ R+RI EA  EL ++L+E
Sbjct:  437 GFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRISEAHSELAKLLTE 500          
BLAST of FC868758 vs. ExPASy Swiss-Prot
Match: ARD1_HUMAN (GTP-binding protein ARD-1 OS=Homo sapiens GN=TRIM23 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.506e-20
Identity = 41/64 (64.06%), Postives = 54/64 (84.38%), Query Frame = 1
Query:  496 GFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSE 687
            GFNVETVEYKN+ FT+WDVGG+ K+RPLW+HY+ NT  ++FVVDS+ R+RI EA  EL ++L+E
Sbjct:  437 GFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRISEAHSELAKLLTE 500          
BLAST of FC868758 vs. ExPASy Swiss-Prot
Match: ARFJ_DICDI (ADP-ribosylation factor J OS=Dictyostelium discoideum GN=arrJ PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.685e-20
Identity = 41/62 (66.13%), Postives = 52/62 (83.87%), Query Frame = 1
Query:  496 GFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRML 681
            GFNVET+EYKN+S TVWDVGGQ KIRPLW+HY+  ++ +IFVVDS DRER+ E K+E+  +L
Sbjct:   58 GFNVETIEYKNLSMTVWDVGGQHKIRPLWKHYYHGSNAVIFVVDSTDRERMDEVKEEIDNLL 119          
BLAST of FC868758 vs. ExPASy Swiss-Prot
Match: ARFH_DICDI (ADP-ribosylation factor H OS=Dictyostelium discoideum GN=arrH PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.814e-19
Identity = 41/62 (66.13%), Postives = 51/62 (82.26%), Query Frame = 1
Query:  496 GFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRML 681
            GFNVET+EYKN+S TVWDVGGQ KIR LW+HY+  T+ +IFVVDS DRER+ E K+E+  +L
Sbjct:   58 GFNVETIEYKNLSMTVWDVGGQYKIRALWKHYYHGTNAIIFVVDSTDRERMDEVKEEIDTLL 119          
BLAST of FC868758 vs. ExPASy Swiss-Prot
Match: ARD1_RAT (GTP-binding protein ARD-1 (Fragment) OS=Rattus norvegicus GN=Trim23 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.814e-19
Identity = 40/64 (62.50%), Postives = 53/64 (82.81%), Query Frame = 1
Query:  496 GFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSE 687
            GFNVETVEYKN+ FT+WDVG + K+RPLW+HY+ NT  ++FVVDS+ R+RI EA  EL ++L+E
Sbjct:  417 GFNVETVEYKNLKFTIWDVGEKHKLRPLWKHYYLNTQAVVFVVDSSHRDRISEAHSELAKLLTE 480          
BLAST of FC868758 vs. ExPASy Swiss-Prot
Match: ARF3_YEAST (ADP-ribosylation factor 3 OS=Saccharomyces cerevisiae GN=ARF3 PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 8.497e-19
Identity = 41/64 (64.06%), Postives = 51/64 (79.69%), Query Frame = 1
Query:  496 GFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSE 687
            GFNVETV YKNV F +WDVGGQ ++RPLWRHYF  T  LIFV+DS+ R R+ EAK+EL+ ++ E
Sbjct:   50 GFNVETVTYKNVKFNMWDVGGQQRLRPLWRHYFPATTALIFVIDSSARNRMEEAKEELYSIIGE 113          
BLAST of FC868758 vs. ExPASy Swiss-Prot
Match: ARFK_DICDI (ADP-ribosylation factor K OS=Dictyostelium discoideum GN=arrK PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.110e-18
Identity = 40/62 (64.52%), Postives = 50/62 (80.65%), Query Frame = 1
Query:  496 GFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRML 681
            GFNVET+ YKN+S TVWDVGGQ KIR LW+HY+  T+ +IFVVDS DRER+ E K+E+  +L
Sbjct:   58 GFNVETIVYKNLSMTVWDVGGQHKIRALWKHYYHGTNAIIFVVDSTDRERMDEVKEEIDNLL 119          
The following BLAST results are available for this feature:
BLAST of FC868758 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
ARF6_CHICK1.267e-2273.44ADP-ribosylation factor 6 OS=Gallus gallus GN=ARF6... [more]
ARF3_DROME1.654e-2273.44ADP-ribosylation factor 3 OS=Drosophila melanogast... [more]
ARF_GIALA6.287e-2272.73ADP-ribosylation factor OS=Giardia lamblia PE=3 SV... [more]
ARD1_MOUSE4.506e-2064.06GTP-binding protein ARD-1 OS=Mus musculus GN=Trim2... [more]
ARD1_HUMAN4.506e-2064.06GTP-binding protein ARD-1 OS=Homo sapiens GN=TRIM2... [more]
ARFJ_DICDI7.685e-2066.13ADP-ribosylation factor J OS=Dictyostelium discoid... [more]
ARFH_DICDI3.814e-1966.13ADP-ribosylation factor H OS=Dictyostelium discoid... [more]
ARD1_RAT3.814e-1962.50GTP-binding protein ARD-1 (Fragment) OS=Rattus nor... [more]
ARF3_YEAST8.497e-1964.06ADP-ribosylation factor 3 OS=Saccharomyces cerevis... [more]
ARFK_DICDI1.110e-1864.52ADP-ribosylation factor K OS=Dictyostelium discoid... [more]

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Properties
Property NameValue
Genbank descriptionC31004D09EF AbioticL1 Citrus clementina cDNA clone C31004D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868758 ID=FC868758; Name=FC868758; organism=Citrus clementina; type=EST; length=704bp
GTCTCTAATTTGCTTCCCTATAGTCCTCAGTTCTCTAGAGTTACAGGTCG
CAGCTCATAATTTCTTCTTCAATTTTCAAGAGAAACAATGGGTATGGTAA
TATCAAGACTGAAAATGCTGTTTGCGAGGAAAGAAATGAGGATTTTAATG
GTGGGTCTTGATGCTGCTGGAAAAACAACCATTCTTTACAAGCTCAAACT
TGGAGAGATTGTTACTACCATACCCACAATTGGTATTTTCAAATTCACCC
TCTGTTTTATCTATTACTACTCTGTGATCATTTTGTGAATTAGATTATAT
CATATTCATATATAGTTGATTAAAGAAGATGATTCCTTTTGCTTTTTTTT
TTTTTTTGAAAAACTATTATTTGTATTCATCTGCCTATAACTGGACGGCT
TTGCATCTTTTCCTTAGAATACAAGTCGATTCTTTTTTAAAATTCGAAGA
GAAAATGAGAATGTTTGATAACTGGTTTGATTTTGGACGAGGCAAGGATT
CAATGTGGAAACTGTTGAGTACAAAAATGTAAGCTTCACGGTGTGGGATG
TAGGAGGGCAGGATAAGATAAGACCATTGTGGCGACACTACTTTCAAAAC
ACACATGGTCTGATATTCGTGGTCGATAGTAATGATCGAGAAAGAATTGG
GGAAGCCAAAGATGAACTGCATAGAATGCTGAGCGAGGTTCGCAAAAGTT
TCAT
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