FC868758

Overview
NameFC868758
Unique NameFC868758
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868758 vs. ExPASy Swiss-Prot
Match: ARL2_CAEBR (ADP-ribosylation factor-like protein 2 OS=Caenorhabditis briggsae GN=evl-20.1 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.302e-14
Identity = 32/68 (47.06%), Postives = 50/68 (73.53%), Query Frame = 1
Query:  496 GFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEVRKS 699
            GF+++TV +K+    +WDVGGQ  +R  W++YF++T  LI+VVDS+DRER+ +  +EL ++L E R S
Sbjct:   49 GFDIKTVHFKDFQLNLWDVGGQKSLRSYWKNYFESTDALIWVVDSSDRERLTQCSEELKKLLQEERLS 116          
BLAST of FC868758 vs. ExPASy Swiss-Prot
Match: ARL4D_PONAB (ADP-ribosylation factor-like protein 4D OS=Pongo abelii GN=ARL4D PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.230e-14
Identity = 35/67 (52.24%), Postives = 48/67 (71.64%), Query Frame = 1
Query:  493 QGFNVETVEY-----KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRM 678
            +GFN E +       + ++F VWDVGGQ+K+RPLWR Y + T GL+FVVD+ + ER+ EAK ELHR+
Sbjct:   53 KGFNTEKIRVPLGGSRGITFQVWDVGGQEKLRPLWRSYTRRTDGLVFVVDAAEAERLEEAKVELHRI 119          
BLAST of FC868758 vs. ExPASy Swiss-Prot
Match: ARL4D_HUMAN (ADP-ribosylation factor-like protein 4D OS=Homo sapiens GN=ARL4D PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 8.230e-14
Identity = 35/67 (52.24%), Postives = 48/67 (71.64%), Query Frame = 1
Query:  493 QGFNVETVEY-----KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRM 678
            +GFN E +       + ++F VWDVGGQ+K+RPLWR Y + T GL+FVVD+ + ER+ EAK ELHR+
Sbjct:   53 KGFNTEKIRVPLGGSRGITFQVWDVGGQEKLRPLWRSYTRRTDGLVFVVDAAEAERLEEAKVELHRI 119          
BLAST of FC868758 vs. ExPASy Swiss-Prot
Match: ARL4D_BOVIN (ADP-ribosylation factor-like protein 4D OS=Bos taurus GN=ARL4D PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.230e-14
Identity = 35/67 (52.24%), Postives = 48/67 (71.64%), Query Frame = 1
Query:  493 QGFNVETVEY-----KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRM 678
            +GFN E +       + ++F VWDVGGQ+K+RPLWR Y + T GL+FVVD+ + ER+ EAK ELHR+
Sbjct:   52 KGFNTEKIRVPLGGSRGITFQVWDVGGQEKLRPLWRSYTRRTDGLVFVVDAAEAERLEEAKVELHRI 118          
BLAST of FC868758 vs. ExPASy Swiss-Prot
Match: ARL2_BOVIN (ADP-ribosylation factor-like protein 2 OS=Bos taurus GN=ARL2 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.075e-13
Identity = 32/66 (48.48%), Postives = 48/66 (72.73%), Query Frame = 1
Query:  496 GFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEVR 693
            GFN++T+E++     +WDVGGQ  +R  WR+YF++T GLI+VVDS DR+R+ + + EL  +L E R
Sbjct:   49 GFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQNLLVEER 114          
BLAST of FC868758 vs. ExPASy Swiss-Prot
Match: ARL2_RAT (ADP-ribosylation factor-like protein 2 OS=Rattus norvegicus GN=Arl2 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.404e-13
Identity = 32/66 (48.48%), Postives = 48/66 (72.73%), Query Frame = 1
Query:  496 GFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEVR 693
            GFN++T+E++     +WDVGGQ  +R  WR+YF++T GLI+VVDS DR+R+ + + EL  +L E R
Sbjct:   49 GFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEER 114          
BLAST of FC868758 vs. ExPASy Swiss-Prot
Match: ARL2_MOUSE (ADP-ribosylation factor-like protein 2 OS=Mus musculus GN=Arl2 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.404e-13
Identity = 32/66 (48.48%), Postives = 48/66 (72.73%), Query Frame = 1
Query:  496 GFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEVR 693
            GFN++T+E++     +WDVGGQ  +R  WR+YF++T GLI+VVDS DR+R+ + + EL  +L E R
Sbjct:   49 GFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEER 114          
BLAST of FC868758 vs. ExPASy Swiss-Prot
Match: ARL2_HUMAN (ADP-ribosylation factor-like protein 2 OS=Homo sapiens GN=ARL2 PE=1 SV=4)

HSP 1 Score: 76.6406 bits (187), Expect = 1.404e-13
Identity = 32/66 (48.48%), Postives = 48/66 (72.73%), Query Frame = 1
Query:  496 GFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEVR 693
            GFN++T+E++     +WDVGGQ  +R  WR+YF++T GLI+VVDS DR+R+ + + EL  +L E R
Sbjct:   49 GFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEER 114          
BLAST of FC868758 vs. ExPASy Swiss-Prot
Match: ARL2_CAEEL (ADP-ribosylation factor-like protein 2 OS=Caenorhabditis elegans GN=evl-20 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.833e-13
Identity = 31/66 (46.97%), Postives = 49/66 (74.24%), Query Frame = 1
Query:  496 GFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEVR 693
            GF+++TV +K+    +WDVGGQ  +R  W++YF++T  LI+VVDS+DRER+ +  +EL ++L E R
Sbjct:   49 GFDIKTVHFKDFQLNLWDVGGQKSLRSYWKNYFESTDALIWVVDSSDRERLLQCSEELKKLLGEER 114          
BLAST of FC868758 vs. ExPASy Swiss-Prot
Match: ARF5_ARATH (Probable ADP-ribosylation factor At2g18390 OS=Arabidopsis thaliana GN=At2g18390 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.833e-13
Identity = 32/66 (48.48%), Postives = 46/66 (69.70%), Query Frame = 1
Query:  496 GFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEVR 693
            GFN++T+ Y+  +  +WDVGGQ  IR  WR+YF+ T GL++VVDS+D  R+ + K EL  +L E R
Sbjct:   49 GFNIKTIIYQKYTLNIWDVGGQKTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEER 114          
The following BLAST results are available for this feature:
BLAST of FC868758 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
ARL2_CAEBR6.302e-1447.06ADP-ribosylation factor-like protein 2 OS=Caenorha... [more]
ARL4D_PONAB8.230e-1452.24ADP-ribosylation factor-like protein 4D OS=Pongo a... [more]
ARL4D_HUMAN8.230e-1452.24ADP-ribosylation factor-like protein 4D OS=Homo sa... [more]
ARL4D_BOVIN8.230e-1452.24ADP-ribosylation factor-like protein 4D OS=Bos tau... [more]
ARL2_BOVIN1.075e-1348.48ADP-ribosylation factor-like protein 2 OS=Bos taur... [more]
ARL2_RAT1.404e-1348.48ADP-ribosylation factor-like protein 2 OS=Rattus n... [more]
ARL2_MOUSE1.404e-1348.48ADP-ribosylation factor-like protein 2 OS=Mus musc... [more]
ARL2_HUMAN1.404e-1348.48ADP-ribosylation factor-like protein 2 OS=Homo sap... [more]
ARL2_CAEEL1.833e-1346.97ADP-ribosylation factor-like protein 2 OS=Caenorha... [more]
ARF5_ARATH1.833e-1348.48Probable ADP-ribosylation factor At2g18390 OS=Arab... [more]

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Properties
Property NameValue
Genbank descriptionC31004D09EF AbioticL1 Citrus clementina cDNA clone C31004D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868758 ID=FC868758; Name=FC868758; organism=Citrus clementina; type=EST; length=704bp
GTCTCTAATTTGCTTCCCTATAGTCCTCAGTTCTCTAGAGTTACAGGTCG
CAGCTCATAATTTCTTCTTCAATTTTCAAGAGAAACAATGGGTATGGTAA
TATCAAGACTGAAAATGCTGTTTGCGAGGAAAGAAATGAGGATTTTAATG
GTGGGTCTTGATGCTGCTGGAAAAACAACCATTCTTTACAAGCTCAAACT
TGGAGAGATTGTTACTACCATACCCACAATTGGTATTTTCAAATTCACCC
TCTGTTTTATCTATTACTACTCTGTGATCATTTTGTGAATTAGATTATAT
CATATTCATATATAGTTGATTAAAGAAGATGATTCCTTTTGCTTTTTTTT
TTTTTTTGAAAAACTATTATTTGTATTCATCTGCCTATAACTGGACGGCT
TTGCATCTTTTCCTTAGAATACAAGTCGATTCTTTTTTAAAATTCGAAGA
GAAAATGAGAATGTTTGATAACTGGTTTGATTTTGGACGAGGCAAGGATT
CAATGTGGAAACTGTTGAGTACAAAAATGTAAGCTTCACGGTGTGGGATG
TAGGAGGGCAGGATAAGATAAGACCATTGTGGCGACACTACTTTCAAAAC
ACACATGGTCTGATATTCGTGGTCGATAGTAATGATCGAGAAAGAATTGG
GGAAGCCAAAGATGAACTGCATAGAATGCTGAGCGAGGTTCGCAAAAGTT
TCAT
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