FC868764

Overview
NameFC868764
Unique NameFC868764
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868764 vs. ExPASy Swiss-Prot
Match: RPE_RHOCA (Ribulose-phosphate 3-epimerase OS=Rhodobacter capsulatus GN=cbbE PE=3 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 9.908e-36
Identity = 72/144 (50.00%), Postives = 97/144 (67.36%), Query Frame = 2
Query:  269 IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFG 700
            I ++PSILSA+FA  G +++A+E  G DW+HVDVMDG FVPN+T GP  V A R      +DVHLMI   +  +  + +AGAD+++ H E     H+HRTL  I+  G K+GV +NP T   AIE VLD+ D+V +M+VNPGFG
Sbjct:    7 IKIAPSILSADFADFGREIQAIEAQGADWVHVDVMDGHFVPNLTFGPPAVAAFRKHVKTVMDVHLMISPVDAYIDAYAQAGADVLTAHVEAGP--HIHRTLQAIRAAGMKSGVAINPGTPAEAIEHVLDIADVVCVMTVNPGFG 148          
BLAST of FC868764 vs. ExPASy Swiss-Prot
Match: RPE_BUCAI (Ribulose-phosphate 3-epimerase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=rpe PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.883e-35
Identity = 72/143 (50.35%), Postives = 105/143 (73.43%), Query Frame = 2
Query:  275 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVT-DLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFG 700
            ++PSILSA+FA+LGE +K V  AG D IH DVMD  +VPN+++GP+++++LR      P+DVHLM+   +  +P F KAGA  ++ H E  +T+H+ RTLN IK+ G KAG+  NPAT L+ ++ +L+ +DL+L+MSVNPGFG
Sbjct:    6 LAPSILSADFARLGEDIKKVIDAGSDLIHFDVMDNHYVPNLSMGPMILESLRNYNITAPIDVHLMVKPVDNLIPQFAKAGATFITFHPE--ATLHIERTLNLIKENGCKAGLAFNPATPLNFLDYILEKLDLILLMSVNPGFG 146          
BLAST of FC868764 vs. ExPASy Swiss-Prot
Match: RPE_SHIFL (Ribulose-phosphate 3-epimerase OS=Shigella flexneri GN=rpe PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.422e-35
Identity = 75/144 (52.08%), Postives = 102/144 (70.83%), Query Frame = 2
Query:  272 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFG 700
            +++PSILSA+FA+LGE       AG D +H DVMD  +VPN+TIGP+V+ +LR      P+DVHLM+   ++ VPDF  AGA I++ H E S   H+ RTL  IK+ G KAG+V NPAT LS ++ V+D +D++L+MSVNPGFG
Sbjct:    5 LIAPSILSADFARLGEDTAKALAAGADVVHFDVMDNHYVPNLTIGPMVLKSLRNYGITAPIDVHLMVKPVDRIVPDFAAAGASIITFHPEASE--HVDRTLQLIKENGCKAGLVFNPATPLSYLDYVMDKLDVILLMSVNPGFG 146          
BLAST of FC868764 vs. ExPASy Swiss-Prot
Match: RPE_ECOLI (Ribulose-phosphate 3-epimerase OS=Escherichia coli (strain K12) GN=rpe PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.422e-35
Identity = 75/144 (52.08%), Postives = 102/144 (70.83%), Query Frame = 2
Query:  272 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFG 700
            +++PSILSA+FA+LGE       AG D +H DVMD  +VPN+TIGP+V+ +LR      P+DVHLM+   ++ VPDF  AGA I++ H E S   H+ RTL  IK+ G KAG+V NPAT LS ++ V+D +D++L+MSVNPGFG
Sbjct:    5 LIAPSILSADFARLGEDTAKALAAGADVVHFDVMDNHYVPNLTIGPMVLKSLRNYGITAPIDVHLMVKPVDRIVPDFAAAGASIITFHPEASE--HVDRTLQLIKENGCKAGLVFNPATPLSYLDYVMDKLDVILLMSVNPGFG 146          
BLAST of FC868764 vs. ExPASy Swiss-Prot
Match: RPE_ECOL6 (Ribulose-phosphate 3-epimerase OS=Escherichia coli O6 GN=rpe PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.422e-35
Identity = 75/144 (52.08%), Postives = 102/144 (70.83%), Query Frame = 2
Query:  272 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFG 700
            +++PSILSA+FA+LGE       AG D +H DVMD  +VPN+TIGP+V+ +LR      P+DVHLM+   ++ VPDF  AGA I++ H E S   H+ RTL  IK+ G KAG+V NPAT LS ++ V+D +D++L+MSVNPGFG
Sbjct:    5 LIAPSILSADFARLGEDTAKALAAGADVVHFDVMDNHYVPNLTIGPMVLKSLRNYGITAPIDVHLMVKPVDRIVPDFAAAGASIITFHPEASE--HVDRTLQLIKENGCKAGLVFNPATPLSYLDYVMDKLDVILLMSVNPGFG 146          
BLAST of FC868764 vs. ExPASy Swiss-Prot
Match: RPE_ECO57 (Ribulose-phosphate 3-epimerase OS=Escherichia coli O157:H7 GN=rpe PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.422e-35
Identity = 75/144 (52.08%), Postives = 102/144 (70.83%), Query Frame = 2
Query:  272 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFG 700
            +++PSILSA+FA+LGE       AG D +H DVMD  +VPN+TIGP+V+ +LR      P+DVHLM+   ++ VPDF  AGA I++ H E S   H+ RTL  IK+ G KAG+V NPAT LS ++ V+D +D++L+MSVNPGFG
Sbjct:    5 LIAPSILSADFARLGEDTAKALAAGADVVHFDVMDNHYVPNLTIGPMVLKSLRNYGITAPIDVHLMVKPVDRIVPDFAAAGASIITFHPEASE--HVDRTLQLIKENGCKAGLVFNPATPLSYLDYVMDKLDVILLMSVNPGFG 146          
BLAST of FC868764 vs. ExPASy Swiss-Prot
Match: RPE_HAEIN (Ribulose-phosphate 3-epimerase OS=Haemophilus influenzae GN=rpe PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.187e-34
Identity = 75/144 (52.08%), Postives = 101/144 (70.14%), Query Frame = 2
Query:  272 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFG 700
            +++PSILSA+ A+LG+ V+ V  AG D IH DVMD  +VPN+T GP V  ALR      P+DVHLM+   ++ +PDF KAGA+ ++ H E S   H+ R+L  I+D G K+G+V NPA  LS ++ VLD VD+VL+MSVNPGFG
Sbjct:    5 LIAPSILSADLARLGDDVQNVLNAGADVIHFDVMDNHYVPNLTFGPAVCQALRDYGITAPIDVHLMVKPVDRIIPDFAKAGANYITFHPESSE--HIDRSLQLIRDCGCKSGLVFNPAMPLSYLDYVLDKVDVVLLMSVNPGFG 146          
BLAST of FC868764 vs. ExPASy Swiss-Prot
Match: RPE_RHORU (Ribulose-phosphate 3-epimerase OS=Rhodospirillum rubrum GN=cbbE PE=3 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 1.025e-32
Identity = 72/144 (50.00%), Postives = 99/144 (68.75%), Query Frame = 2
Query:  269 IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFG 700
            I ++PS+LSA+FA    +  +    G D +H DVMD  +VPN+T+GPLV  ALRP T LP+DVHLM    +  +  F +AGAD+++ H E S   H+HR++  I+  G KAGV LNPA+ LS ++ +L+ +DLVLIMSVNPGFG
Sbjct:    5 IRIAPSLLSADFAISRPRCPSDGRTGADILHFDVMDNHYVPNLTVGPLVCAALRPHTSLPIDVHLMTRPVDPLIDSFAEAGADMITFHPEASD--HVHRSVQMIRKRGLKAGVALNPASPLSLLDHILEDLDLVLIMSVNPGFG 146          
BLAST of FC868764 vs. ExPASy Swiss-Prot
Match: RPE_TREPA (Ribulose-phosphate 3-epimerase OS=Treponema pallidum GN=rpe PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.089e-32
Identity = 66/141 (46.81%), Postives = 95/141 (67.38%), Query Frame = 2
Query:  275 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGF 697
            ++PS+LSA+F+ L   +  +E  G  W+H+DVMDG FVPN+T G  V+  LR  T LP DVHLM+  P   + DF++AGAD ++ H E  + +H HR ++ I+  G K G+ L P+T ++A+  VL  VDLVL+M+VNPGF
Sbjct:    7 LAPSLLSADFSALDRALVYLEAHGAQWVHLDVMDGHFVPNLTFGAPVLRCLRSKTHLPFDVHLMVSRPADLIEDFVQAGADFLTFHIE--AEVHAHRLIHAIRGRGVKVGISLVPSTPVAALSEVLPFVDLVLVMTVNPGF 145          
BLAST of FC868764 vs. ExPASy Swiss-Prot
Match: RPE_STRCO (Ribulose-phosphate 3-epimerase OS=Streptomyces coelicolor GN=rpe PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.253e-30
Identity = 68/142 (47.89%), Postives = 97/142 (68.31%), Query Frame = 2
Query:  275 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFG 700
            ++PSILSA+FA+L ++ KAVE  G DW+HVDVMD  FVPN+T+G  VV++L   TD PLD HLMI  P++  P +++AGA  V+ H E ++     R   +I+  GA+A + L PAT +   E +L  +D++LIM+V PGFG
Sbjct:    5 INPSILSADFARLADEAKAVE--GADWLHVDVMDNHFVPNLTLGVPVVESLARATDTPLDCHLMIEAPDRWAPQYVEAGAGSVTFHAEAAAA--PVRLAREIRAKGARASMALKPATPVEPYEDLLPELDMLLIMTVEPGFG 142          
The following BLAST results are available for this feature:
BLAST of FC868764 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
RPE_RHOCA9.908e-3650.00Ribulose-phosphate 3-epimerase OS=Rhodobacter caps... [more]
RPE_BUCAI2.883e-3550.35Ribulose-phosphate 3-epimerase OS=Buchnera aphidic... [more]
RPE_SHIFL6.422e-3552.08Ribulose-phosphate 3-epimerase OS=Shigella flexner... [more]
RPE_ECOLI6.422e-3552.08Ribulose-phosphate 3-epimerase OS=Escherichia coli... [more]
RPE_ECOL66.422e-3552.08Ribulose-phosphate 3-epimerase OS=Escherichia coli... [more]
RPE_ECO576.422e-3552.08Ribulose-phosphate 3-epimerase OS=Escherichia coli... [more]
RPE_HAEIN3.187e-3452.08Ribulose-phosphate 3-epimerase OS=Haemophilus infl... [more]
RPE_RHORU1.025e-3250.00Ribulose-phosphate 3-epimerase OS=Rhodospirillum r... [more]
RPE_TREPA5.089e-3246.81Ribulose-phosphate 3-epimerase OS=Treponema pallid... [more]
RPE_STRCO1.253e-3047.89Ribulose-phosphate 3-epimerase OS=Streptomyces coe... [more]

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Properties
Property NameValue
Genbank descriptionC31004E04EF AbioticL1 Citrus clementina cDNA clone C31004E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868764 ID=FC868764; Name=FC868764; organism=Citrus clementina; type=EST; length=702bp
TCGCCGGGGAACGAAAACAGATACCATATTTCCTCTCACTAGCCATAACC
AAACCAACAGTTACGTTTTAGAGAGAGAAACAAAAAAGAGCGTCAAGATG
TCTACAGGCTCGCTGTGTTCATCAACGACTCAGATCAATGGCTTTACAGG
TGGTTTCATGTTGCAGAAAACCAATCTTAATCAGCCCAGTTCACTTAGTT
TTACAAGGAGGAGAATTCATACTATAGTGAAGGCATCAGCTCGTGTGGAT
AAGTTCTCGAAAAGTGATATTATTGTTTCTCCATCTATTCTCTCTGCTAA
TTTCGCGAAGTTAGGCGAGCAGGTAAAAGCAGTGGAATTGGCTGGTTGTG
ATTGGATTCATGTTGATGTCATGGATGGTCGTTTTGTTCCAAACATTACA
ATTGGACCTCTTGTGGTTGATGCCTTGCGCCCTGTGACAGACCTTCCTTT
GGATGTTCATTTGATGATTGTCGAACCTGAACAACGAGTGCCTGATTTTA
TCAAGGCTGGAGCAGACATAGTCAGCGTCCACTGTGAGCAATCATCCACC
ATTCATTTGCACCGCACTCTTAACCAAATAAAAGATTTGGGAGCTAAAGC
TGGAGTTGTCCTTAACCCTGCTACCTCACTGAGTGCAATAGAATGTGTCC
TTGATGTGGTTGATCTTGTCTTGATCATGTCGGTGAACCCTGGCTTTGGT
GG
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