FC868764

Overview
NameFC868764
Unique NameFC868764
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868764 vs. ExPASy Swiss-Prot
Match: RPE_YEAST (Ribulose-phosphate 3-epimerase OS=Saccharomyces cerevisiae GN=RPE1 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.905e-24
Identity = 63/157 (40.13%), Postives = 89/157 (56.69%), Query Frame = 2
Query:  272 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLP-------------LDVHLMIVEPEQRVPDFIKAGADIVSVHCEQS-STIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFG 700
            I++PSIL+++FA LG +   V  AG DW+H+DVMDG FVPNIT+G  +V +LR     P              D H+M+  PE+ V DF K GAD  + H E +   +HL   +  IK  G KA   + P TS+  +  +   +D+ L+M+V PGFG
Sbjct:    5 IIAPSILASDFANLGCECHKVINAGADWLHIDVMDGHFVPNITLGQPIVTSLRRSVPRPGDASNTEKKPTAFFDCHMMVENPEKWVDDFAKCGADQFTFHYEATQDPLHL---VKLIKSKGIKAACAIKPGTSVDVLFELAPHLDMALVMTVEPGFG 158          
BLAST of FC868764 vs. ExPASy Swiss-Prot
Match: RPE1_ORYSJ (Ribulose-phosphate 3-epimerase, cytoplasmic isoform OS=Oryza sativa subsp. japonica GN=Os09g0505700 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.306e-23
Identity = 58/145 (40.00%), Postives = 84/145 (57.93%), Query Frame = 2
Query:  275 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDV---VDLVLIMSVNPGFG 700
            ++PS+LS++FA L  +   +   G DW+H+D+MDG FVPN+TIG  V+ +LR  T   LD HLM+  P   V    KAGA   + H E S   +    +  IK  G + GV L P T +  +  +++    V+LVL+M+V PGFG
Sbjct:    9 IAPSMLSSDFANLAAEADRMVRLGADWLHMDIMDGHFVPNLTIGAPVIQSLRKHTKAYLDCHLMVTNPSDYVEPLAKAGASGFTFHIEVSRD-NWQELIQSIKAKGMRPGVSLRPGTPVEEVFPLVEAENPVELVLVMTVEPGFG 152          
BLAST of FC868764 vs. ExPASy Swiss-Prot
Match: RPE_CANGA (Ribulose-phosphate 3-epimerase OS=Candida glabrata GN=RPE1 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.143e-22
Identity = 60/159 (37.74%), Postives = 88/159 (55.35%), Query Frame = 2
Query:  272 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLP----------------LDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFG 700
            I++PSIL+++FA LG +   V  +G +W+H+DVMDG FVPNIT+G  +V +LR                       D H+M+ EPE+ V DF KAGAD  + H E  +T      +  IK+ G KA   + P T +  +  +   +D+ L+M+V PGFG
Sbjct:    5 IIAPSILASDFANLGCECHRVINSGAEWLHIDVMDGHFVPNITLGQPIVTSLRRAVPRSQEEEKASGEVARPTAFFDCHMMVEEPEKWVADFAKAGADQFTFHYE--ATKDPLSLVKLIKENGIKAACAIKPGTPVDVLFELAPYLDMALVMTVEPGFG 161          
BLAST of FC868764 vs. ExPASy Swiss-Prot
Match: ALSE_ECOLI (D-allulose-6-phosphate 3-epimerase OS=Escherichia coli (strain K12) GN=alsE PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.655e-22
Identity = 47/141 (33.33%), Postives = 86/141 (60.99%), Query Frame = 2
Query:  275 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGF 697
            +SPS++  +  K  EQ++ ++ +  D+ H+D+MDG FVPN+T+ P  V  ++ +   PLD HLM+  P+  +    +AGAD +++H E  +     R +++I+    K G++LNP T + A++  +   D + +M+V+PGF
Sbjct:    3 ISPSLMCMDLLKFKEQIEFID-SHADYFHIDIMDGHFVPNLTLSPFFVSQVKKLATKPLDCHLMVTRPQDYIAQLARAGADFITLHPETING-QAFRLIDEIRRHDMKVGLILNPETPVEAMKYYIHKADKITVMTVDPGF 141          
BLAST of FC868764 vs. ExPASy Swiss-Prot
Match: RPE_SCHPO (Ribulose-phosphate 3-epimerase OS=Schizosaccharomyces pombe GN=SPAC31G5.05c PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.235e-22
Identity = 55/145 (37.93%), Postives = 86/145 (59.31%), Query Frame = 2
Query:  275 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALR---PVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFG 700
            ++PS+L+ +FA L ++V  +   G DW+HVDVMD +FVPN+TIGP+VV A+R      +   D HLM++EPE+ +     AGA +   H E  +T      +++  + G   G  L P T +  I   ++ +D+VL+M+V PG G
Sbjct:    6 IAPSLLAGDFANLEKEVGRMLKYGSDWLHVDVMDAQFVPNLTIGPIVVKAMRNHYTKEEAFFDCHLMVIEPERYIDQLADAGASLFCFHYE--ATEKHEEIISRAHEKGMLVGCALKPKTPVEVILPFVEKLDMVLVMTVEPGKG 148          
BLAST of FC868764 vs. ExPASy Swiss-Prot
Match: RPE_ASHGO (Ribulose-phosphate 3-epimerase OS=Ashbya gossypii GN=RPE1 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.064e-21
Identity = 59/154 (38.31%), Postives = 89/154 (57.79%), Query Frame = 2
Query:  272 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV--------TDLP---LDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFG 700
            I++PSIL+++FA L      V  AG +W+H+DVMDG FVPNIT+GP +V +LR          +D P    D H+M+ EPE+ V  F++ GAD  + H E  +T +    +  IK  G +A   + P T +  +  +   +D+ L+M+V PGFG
Sbjct:    5 IIAPSILASDFANLECGCHRVINAGAEWLHIDVMDGHFVPNITLGPPIVKSLRKAVPRVGDKESDKPKAFFDCHMMVAEPEKWVDVFVENGADQFTFHYE--ATKNPLELVKLIKSRGIRAACAIKPDTPVDVLFELAPYLDMALVMTVEPGFG 156          
BLAST of FC868764 vs. ExPASy Swiss-Prot
Match: RPE_PONAB (Ribulose-phosphate 3-epimerase OS=Pongo abelii GN=RPE PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.003e-21
Identity = 55/144 (38.19%), Postives = 87/144 (60.42%), Query Frame = 2
Query:  275 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV--TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFG 700
            + PSIL+++ A LG +   +  +G D++H+DVMDG FVPNIT G  VV++LR     D   D+H+M+ +PEQ V     AGA+  + H E  +T +    +  I++ G K G+ + P TS+  +    + +D+ L+M+V PGFG
Sbjct:    7 IGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQLGQDPFFDMHMMVSKPEQWVKPMAVAGANQYAFHLE--ATENPGALIKDIRENGMKVGLAIKPGTSVEYLAPWANQIDMALVMTVEPGFG 148          
BLAST of FC868764 vs. ExPASy Swiss-Prot
Match: RPE_HUMAN (Ribulose-phosphate 3-epimerase OS=Homo sapiens GN=RPE PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.003e-21
Identity = 55/144 (38.19%), Postives = 87/144 (60.42%), Query Frame = 2
Query:  275 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV--TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFG 700
            + PSIL+++ A LG +   +  +G D++H+DVMDG FVPNIT G  VV++LR     D   D+H+M+ +PEQ V     AGA+  + H E  +T +    +  I++ G K G+ + P TS+  +    + +D+ L+M+V PGFG
Sbjct:    7 IGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQLGQDPFFDMHMMVSKPEQWVKPMAVAGANQYTFHLE--ATENPGALIKDIRENGMKVGLAIKPGTSVEYLAPWANQIDMALVMTVEPGFG 148          
BLAST of FC868764 vs. ExPASy Swiss-Prot
Match: RPE_MOUSE (Ribulose-phosphate 3-epimerase OS=Mus musculus GN=Rpe PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.620e-20
Identity = 54/144 (37.50%), Postives = 86/144 (59.72%), Query Frame = 2
Query:  275 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV--TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFG 700
            + PSIL+++ A LG +   +  +G D++H+DVMDG FVPNIT G  VV++LR     D   D+H+M+  PEQ V     AGA+  + H E  +T +    +  I++ G K G+ + P T++  +    + +D+ L+M+V PGFG
Sbjct:    7 IGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQLGQDPFFDMHMMVSRPEQWVKPMAVAGANQYTFHLE--ATENPGALIKDIRENGMKVGLAIKPGTTVEYLAPWANQIDMALVMTVEPGFG 148          
BLAST of FC868764 vs. ExPASy Swiss-Prot
Match: LSRE_SALPA (Putative epimerase lsrE OS=Salmonella paratyphi A GN=lsrE PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.664e-14
Identity = 49/151 (32.45%), Postives = 81/151 (53.64%), Query Frame = 2
Query:  275 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQI---------KDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFG 700
            +S  IL+  +  L   ++ +E      +H+D+MDG+F P  T+GP  V+ L P T +  DVHLM+ +        +KAGA  +++  E    IHLH TL+ +          ++    G+ L PAT L  I  +L  V+++ +++VNPG+G
Sbjct:   22 LSVGILAGQWIALHRYLQQLEALNQPLLHLDLMDGQFCPQFTVGPWAVEQL-PQTFIK-DVHLMVADQWTAAQACVKAGAHCITLQAE--GDIHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPILSDVEVIQLLAVNPGYG 168          
The following BLAST results are available for this feature:
BLAST of FC868764 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
RPE_YEAST3.905e-2440.13Ribulose-phosphate 3-epimerase OS=Saccharomyces ce... [more]
RPE1_ORYSJ3.306e-2340.00Ribulose-phosphate 3-epimerase, cytoplasmic isofor... [more]
RPE_CANGA2.143e-2237.74Ribulose-phosphate 3-epimerase OS=Candida glabrata... [more]
ALSE_ECOLI3.655e-2233.33D-allulose-6-phosphate 3-epimerase OS=Escherichia ... [more]
RPE_SCHPO6.235e-2237.93Ribulose-phosphate 3-epimerase OS=Schizosaccharomy... [more]
RPE_ASHGO1.064e-2138.31Ribulose-phosphate 3-epimerase OS=Ashbya gossypii ... [more]
RPE_PONAB9.003e-2138.19Ribulose-phosphate 3-epimerase OS=Pongo abelii GN=... [more]
RPE_HUMAN9.003e-2138.19Ribulose-phosphate 3-epimerase OS=Homo sapiens GN=... [more]
RPE_MOUSE2.620e-2037.50Ribulose-phosphate 3-epimerase OS=Mus musculus GN=... [more]
LSRE_SALPA3.664e-1432.45Putative epimerase lsrE OS=Salmonella paratyphi A ... [more]

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Properties
Property NameValue
Genbank descriptionC31004E04EF AbioticL1 Citrus clementina cDNA clone C31004E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868764 ID=FC868764; Name=FC868764; organism=Citrus clementina; type=EST; length=702bp
TCGCCGGGGAACGAAAACAGATACCATATTTCCTCTCACTAGCCATAACC
AAACCAACAGTTACGTTTTAGAGAGAGAAACAAAAAAGAGCGTCAAGATG
TCTACAGGCTCGCTGTGTTCATCAACGACTCAGATCAATGGCTTTACAGG
TGGTTTCATGTTGCAGAAAACCAATCTTAATCAGCCCAGTTCACTTAGTT
TTACAAGGAGGAGAATTCATACTATAGTGAAGGCATCAGCTCGTGTGGAT
AAGTTCTCGAAAAGTGATATTATTGTTTCTCCATCTATTCTCTCTGCTAA
TTTCGCGAAGTTAGGCGAGCAGGTAAAAGCAGTGGAATTGGCTGGTTGTG
ATTGGATTCATGTTGATGTCATGGATGGTCGTTTTGTTCCAAACATTACA
ATTGGACCTCTTGTGGTTGATGCCTTGCGCCCTGTGACAGACCTTCCTTT
GGATGTTCATTTGATGATTGTCGAACCTGAACAACGAGTGCCTGATTTTA
TCAAGGCTGGAGCAGACATAGTCAGCGTCCACTGTGAGCAATCATCCACC
ATTCATTTGCACCGCACTCTTAACCAAATAAAAGATTTGGGAGCTAAAGC
TGGAGTTGTCCTTAACCCTGCTACCTCACTGAGTGCAATAGAATGTGTCC
TTGATGTGGTTGATCTTGTCTTGATCATGTCGGTGAACCCTGGCTTTGGT
GG
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