FC868764

Overview
NameFC868764
Unique NameFC868764
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868764 vs. ExPASy Swiss-Prot
Match: LSRE_SALTY (Putative epimerase lsrE OS=Salmonella typhimurium GN=lsrE PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.162e-14
Identity = 49/151 (32.45%), Postives = 80/151 (52.98%), Query Frame = 2
Query:  275 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQI---------KDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFG 700
            +S  IL+  +  L   ++ +E      +H+D+MDG+F P  T+GP  V  L P T +  DVHLM+ +        +KAGA  +++  E    IHLH TL+ +          ++    G+ L PAT L  I  +L  V+++ +++VNPG+G
Sbjct:   22 LSVGILAGQWIALHRYLQQLEALNQPLLHLDLMDGQFCPQFTVGPWAVGQL-PQTFIK-DVHLMVADQWTAAQACVKAGAHCITLQAE--GDIHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPILSDVEVIQLLAVNPGYG 168          
BLAST of FC868764 vs. ExPASy Swiss-Prot
Match: LSRE_SALTI (Putative epimerase lsrE OS=Salmonella typhi GN=lsrE PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.162e-14
Identity = 49/151 (32.45%), Postives = 80/151 (52.98%), Query Frame = 2
Query:  275 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQI---------KDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFG 700
            +S  IL+  +  L   ++ +E      +H+D+MDG+F P  T+GP  V  L P T +  DVHLM+ +        +KAGA  +++  E    IHLH TL+ +          ++    G+ L PAT L  I  +L  V+++ +++VNPG+G
Sbjct:   22 LSVGILAGQWIALHRYLQQLEALNQPLLHLDLMDGQFCPQFTVGPWAVGQL-PQTFIK-DVHLMVADQWAAAQACVKAGAHCITLQAE--GDIHLHHTLSWLGQQTVPVIDGEMPVIRGISLCPATPLDVIIPILSDVEVIQLLAVNPGYG 168          
BLAST of FC868764 vs. ExPASy Swiss-Prot
Match: LSRE_SALPB (Putative epimerase lsrE OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=lsrE PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.162e-14
Identity = 49/151 (32.45%), Postives = 80/151 (52.98%), Query Frame = 2
Query:  275 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQI---------KDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFG 700
            +S  IL+  +  L   ++ +E      +H+D+MDG+F P  T+GP  V  L P T +  DVHLM+ +        +KAGA  +++  E    IHLH TL+ +          ++    G+ L PAT L  I  +L  V+++ +++VNPG+G
Sbjct:   22 LSVGILAGQWIALHRYLQQLEALNQPLLHLDLMDGQFCPQFTVGPWAVGQL-PQTFIK-DVHLMVADQWTAAQACVKAGAHCITLQAE--GDIHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPILSDVEVIQLLAVNPGYG 168          
BLAST of FC868764 vs. ExPASy Swiss-Prot
Match: LSRE_SALCH (Putative epimerase lsrE OS=Salmonella choleraesuis GN=lsrE PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.162e-14
Identity = 49/151 (32.45%), Postives = 80/151 (52.98%), Query Frame = 2
Query:  275 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQI---------KDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFG 700
            +S  IL+  +  L   ++ +E      +H+D+MDG+F P  T+GP  V  L P T +  DVHLM+ +        +KAGA  +++  E    IHLH TL+ +          ++    G+ L PAT L  I  +L  V+++ +++VNPG+G
Sbjct:   22 LSVGILAGQWIALHRYLQQLEALNQPLLHLDLMDGQFCPQFTVGPWAVGQL-PQTFIK-DVHLMVADQWTAAQACVKAGAHCITLQAE--GDIHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPILSDVEVIQLLAVNPGYG 168          
BLAST of FC868764 vs. ExPASy Swiss-Prot
Match: RPE_ENCCU (Ribulose-phosphate 3-epimerase OS=Encephalitozoon cuniculi GN=RPE1 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.818e-13
Identity = 49/142 (34.51%), Postives = 71/142 (50.00%), Query Frame = 2
Query:  284 SILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVH---CEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFG 700
            SIL  NF  L E++  ++  G   IH+DVMD  FV NIT GP +++ +    D   DVH+M+  P   +         +V++H   C+++      R  N +       G+ LNP T +   E  +   D VLIMSV PGFG
Sbjct:   13 SILDCNFGNLEEELGELKRNGVTNIHLDVMDTTFVKNITFGPCIINRILE-HDFVFDVHMMVESPLDIIMQIDLERVSLVTIHSEVCDKAGVAEYLRKRNVL------FGIALNPETQVDDAE--MRSADFVLIMSVKPGFG 145          
BLAST of FC868764 vs. ExPASy Swiss-Prot
Match: SGCE_ECOLI (Protein sgcE OS=Escherichia coli (strain K12) GN=sgcE PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.051e-13
Identity = 44/141 (31.21%), Postives = 73/141 (51.77%), Query Frame = 2
Query:  269 IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNP 691
            +I+ PS+ SAN    G ++ A++      +H+D+ D  F+ NIT G   V A+   T  PL  H M+  P++      +     + VH E  +  +   TL +I+  GA+AG+V NPAT + A   +   +D V++M+  P
Sbjct:    1 MILHPSLASANPLHYGRELTALDNLDFGSLHLDIEDSSFINNITFGMKTVQAVARQTPHPLSFHFMLARPQRWFNALAEIRPAWIFVHAE--TLDYPSETLTEIRHTGARAGLVFNPATPIDAWRYLASELDGVMVMTSEP 139          
The following BLAST results are available for this feature:
BLAST of FC868764 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
LSRE_SALTY8.162e-1432.45Putative epimerase lsrE OS=Salmonella typhimurium ... [more]
LSRE_SALTI8.162e-1432.45Putative epimerase lsrE OS=Salmonella typhi GN=lsr... [more]
LSRE_SALPB8.162e-1432.45Putative epimerase lsrE OS=Salmonella paratyphi B ... [more]
LSRE_SALCH8.162e-1432.45Putative epimerase lsrE OS=Salmonella choleraesuis... [more]
RPE_ENCCU1.818e-1334.51Ribulose-phosphate 3-epimerase OS=Encephalitozoon ... [more]
SGCE_ECOLI4.051e-1331.21Protein sgcE OS=Escherichia coli (strain K12) GN=s... [more]

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Properties
Property NameValue
Genbank descriptionC31004E04EF AbioticL1 Citrus clementina cDNA clone C31004E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868764 ID=FC868764; Name=FC868764; organism=Citrus clementina; type=EST; length=702bp
TCGCCGGGGAACGAAAACAGATACCATATTTCCTCTCACTAGCCATAACC
AAACCAACAGTTACGTTTTAGAGAGAGAAACAAAAAAGAGCGTCAAGATG
TCTACAGGCTCGCTGTGTTCATCAACGACTCAGATCAATGGCTTTACAGG
TGGTTTCATGTTGCAGAAAACCAATCTTAATCAGCCCAGTTCACTTAGTT
TTACAAGGAGGAGAATTCATACTATAGTGAAGGCATCAGCTCGTGTGGAT
AAGTTCTCGAAAAGTGATATTATTGTTTCTCCATCTATTCTCTCTGCTAA
TTTCGCGAAGTTAGGCGAGCAGGTAAAAGCAGTGGAATTGGCTGGTTGTG
ATTGGATTCATGTTGATGTCATGGATGGTCGTTTTGTTCCAAACATTACA
ATTGGACCTCTTGTGGTTGATGCCTTGCGCCCTGTGACAGACCTTCCTTT
GGATGTTCATTTGATGATTGTCGAACCTGAACAACGAGTGCCTGATTTTA
TCAAGGCTGGAGCAGACATAGTCAGCGTCCACTGTGAGCAATCATCCACC
ATTCATTTGCACCGCACTCTTAACCAAATAAAAGATTTGGGAGCTAAAGC
TGGAGTTGTCCTTAACCCTGCTACCTCACTGAGTGCAATAGAATGTGTCC
TTGATGTGGTTGATCTTGTCTTGATCATGTCGGTGAACCCTGGCTTTGGT
GG
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