FC868765

Overview
NameFC868765
Unique NameFC868765
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length732
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868765 vs. ExPASy Swiss-Prot
Match: AGO17_ORYSJ (Protein argonaute 17 OS=Oryza sativa subsp. japonica GN=AGO17 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.131e-24
Identity = 82/242 (33.88%), Postives = 116/242 (47.93%), Query Frame = 3
Query:   60 LQELLEDVTSRAYKIGKGHLQILICVMSRKDDG-YKYLKWISETKVGVVTQCCLSTNANKGKGQDQYXXXXXXXXXXXXGGSNAELID----RLPYFKGEDHVMFVGADVNHPGASNKTSPSIAAVVATVNWPAANRYVARVRPQDHRTEKILNF-------------AGMCLEVVKSYVQLNKVRPQEIIVFRDGVSEGQFDMVLNEELVPLKMAFRSM--DYHPRITLIVAQKRHQTRLF 725
            L+ L +DV       G+  L +LI ++   +   Y  +K I ET +G+++QCCL+ +  K      Y            GG N  L+D    RLP+ +    ++F GA V HP      S SIAAVVA+ +WP   +Y   +  Q    E I                +GM  E + S+ +  K +P  II +RDGVS+GQ    L  EL  +KMA  SM  DY+P +T +V QK   TRLF
Sbjct:  494 LRTLHDDVMDILRPQGR-KLDLLIVILPNNNGSLYGDVKRICETDIGLISQCCLAKHVLKMN--KWYLASVALKINAKMGGRNTVLVDALEMRLPHVRDTPTIVF-GAHVTHPHPGKANSSSIAAVVASQDWPEVTKYAGLISVQACHQESIQGLFKVQDDPERGTTTSGMIKEHLMSFYRATKRKPGRIIFYRDGVSKGQLPQALMHELGAIKMACASMGPDYNPLVTYVVLQKCRHTRLF 731          
BLAST of FC868765 vs. ExPASy Swiss-Prot
Match: AGO1_HUMAN (Protein argonaute-1 OS=Homo sapiens GN=EIF2C1 PE=1 SV=3)

HSP 1 Score: 109.768 bits (273), Expect = 1.589e-23
Identity = 73/205 (35.61%), Postives = 106/205 (51.71%), Query Frame = 3
Query:  117 LQILICVMSRKDDGYKYLKWISETKVGVVTQCCLSTNANKGKGQDQYXXXXXXXXXXXXGGSNAELIDRLPYFKGEDHVMFVGADVNHPGASNKTSPSIAAVVATVNWPAANRYVARVRPQDHRTEKILNFAGMCLEVVKSYVQLNKVRPQEIIVFRDGVSEGQFDMVLNEELVPLKMAFRSM--DYHPRITLIVAQKRHQTRLF 725
            LQ++I ++  K   Y  +K + +T +G+ TQC    N  K   Q               GG N  L+        +  V+F+GADV HP A +   PSI AVV +++    +RY A VR Q  R E I + + M  E++  + +  + +P  II +RDGV EGQ   +L+ EL+ ++ A   +  DY P IT IV QKRH TRLF
Sbjct:  513 LQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQT--LSNLCLKINVKLGGINNILVPHQRSAVFQQPVIFLGADVTHPPAGDGKKPSITAVVGSMD-AHPSRYCATVRVQRPRQEIIEDLSYMVRELLIQFYKSTRFKPTRIIFYRDGVPEGQLPQILHYELLAIRDACIKLEKDYQPGITYIVVQKRHHTRLF 714          
BLAST of FC868765 vs. ExPASy Swiss-Prot
Match: AGO4A_ORYSJ (Protein argonaute 4A OS=Oryza sativa subsp. japonica GN=AGO4A PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.756e-22
Identity = 81/255 (31.76%), Postives = 120/255 (47.06%), Query Frame = 3
Query:   12 VLSEPASMRLFSNVGGLQELLEDVTSRAYKIGKGHLQILICVMSRKDDGYKYLKWISE--TKVGVVTQCCLSTNANKGKGQDQYXXXXXXXXXXXXGGSNAEL-IDRLPYFKGEDHV--MFVGADVNHPGASNKTSPSIAAVVATVNWPAANRYVARVRPQDHRTEKILNFA---------GMCLEV-VKSYVQLNKVRPQEIIVFRDGVSEGQFDMVLNEELVPLKMAFRSMD--YHPRITLIVAQKRHQTRLF 725
            V+ E  SMR       +  +++ +  +      G  + L+CV++ + +   Y  W  +   + G++TQC   T  N     DQY            GG N+ L I+  P       V  + +G DV+H        PSIAAVV++  WP  ++Y A VR Q  + E I             G+  E+ V  Y    K +P ++I+FRDGVSE QF  VLN EL  +  A + +D  + P+ TLIVAQK H T+ F
Sbjct:  524 VIEEDPSMRRAPAARRVDGMIDKMQKKL----PGQPKFLLCVLAERKNSDIYGPWKRKCLAEFGIITQCVAPTRVN-----DQYITNVLLKINAKLGGLNSLLQIETSPSIPLVSKVPTIILGMDVSHGSPGQSDIPSIAAVVSSREWPLVSKYRASVRSQSPKLEMIDGLFKPQGAQEDDGLIRELLVDFYTSTGKRKPDQVIIFRDGVSESQFTQVLNIELDQIIEACKFLDENWSPKFTLIVAQKNHHTKFF 769          
BLAST of FC868765 vs. ExPASy Swiss-Prot
Match: AGO4_CHICK (Protein argonaute-4 OS=Gallus gallus GN=EIF2C4 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.675e-22
Identity = 74/215 (34.42%), Postives = 105/215 (48.84%), Query Frame = 3
Query:  117 LQILICVMSRKDDGYKYLKWISETKVGVVTQCCLSTNANKGKGQDQYXXXXXXXXXXXXGGSNAELIDRLPYFKGEDHVMFVGADVNHPGASNKTSPSIAAVVATVNWPAANRYVARVRPQDHRTEK----------ILNFAGMCLEVVKSYVQLNKVRPQEIIVFRDGVSEGQFDMVLNEELVPLKMAFRSM--DYHPRITLIVAQKRHQTRLF 725
            LQ+++ ++  K   Y  +K + +T +G+ TQC    N  K   Q               GG N  L+        +  V+F+GADV HP A +   PSIAAVV +++    +RY A VR Q  R E           I +   M  E++  + +  + +P  II +R GVSEGQ   V   EL+ ++ A  S+  DY P IT IV QKRH TRLF
Sbjct:  440 LQLIVVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQT--LSNLCLKINAKLGGINNVLVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMD-GHPSRYCATVRVQTSRQETSQELLYSQEVIQDLTNMVRELLIQFYKSTRFKPTRIIYYRGGVSEGQMKQVAWPELIAIRKACISLEEDYRPGITYIVVQKRHHTRLF 651          
BLAST of FC868765 vs. ExPASy Swiss-Prot
Match: AGO4_MOUSE (Protein argonaute-4 OS=Mus musculus GN=Eif2c4 PE=2 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 8.717e-22
Identity = 73/215 (33.95%), Postives = 105/215 (48.84%), Query Frame = 3
Query:  117 LQILICVMSRKDDGYKYLKWISETKVGVVTQCCLSTNANKGKGQDQYXXXXXXXXXXXXGGSNAELIDRLPYFKGEDHVMFVGADVNHPGASNKTSPSIAAVVATVNWPAANRYVARVRPQDHR----------TEKILNFAGMCLEVVKSYVQLNKVRPQEIIVFRDGVSEGQFDMVLNEELVPLKMAFRSM--DYHPRITLIVAQKRHQTRLF 725
            LQ+++ ++  K   Y  +K + +T +G+ TQC    N  K   Q               GG N  L+        +  V+F+GADV HP A +   PSIAAVV +++    +RY A VR Q  R           E + +   M  E++  + +  + +P  II +R GVSEGQ   V   EL+ ++ A  S+  DY P IT IV QKRH TRLF
Sbjct:  507 LQLIVVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQT--LSNLCLKMNAKLGGINNVLVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMD-GHPSRYCATVRVQTSRQEITQELLYSQEVVQDLTSMARELLIQFYKSTRFKPTRIIYYRGGVSEGQMKQVAWPELIAIRKACISLEEDYRPGITYIVVQKRHHTRLF 718          
BLAST of FC868765 vs. ExPASy Swiss-Prot
Match: AGO4_HUMAN (Protein argonaute-4 OS=Homo sapiens GN=EIF2C4 PE=1 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 8.717e-22
Identity = 74/215 (34.42%), Postives = 105/215 (48.84%), Query Frame = 3
Query:  117 LQILICVMSRKDDGYKYLKWISETKVGVVTQCCLSTNANKGKGQDQYXXXXXXXXXXXXGGSNAELIDRLPYFKGEDHVMFVGADVNHPGASNKTSPSIAAVVATVNWPAANRYVARVRPQDHR----------TEKILNFAGMCLEVVKSYVQLNKVRPQEIIVFRDGVSEGQFDMVLNEELVPLKMAFRSM--DYHPRITLIVAQKRHQTRLF 725
            LQ+++ ++  K   Y  +K + +T +G+ TQC    N  K   Q               GG N  L+        +  V+F+GADV HP A +   PSIAAVV +++    +RY A VR Q  R           E I +   M  E++  + +  + +P  II +R GVSEGQ   V   EL+ ++ A  S+  DY P IT IV QKRH TRLF
Sbjct:  507 LQLIVVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQT--LSNLCLKINAKLGGINNVLVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMD-GHPSRYCATVRVQTSRQEISQELLYSQEVIQDLTNMVRELLIQFYKSTRFKPTRIIYYRGGVSEGQMKQVAWPELIAIRKACISLEEDYRPGITYIVVQKRHHTRLF 718          
BLAST of FC868765 vs. ExPASy Swiss-Prot
Match: AGO1_SCHPO (Protein argonaute OS=Schizosaccharomyces pombe GN=ago1 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.717e-22
Identity = 72/227 (31.72%), Postives = 112/227 (49.34%), Query Frame = 3
Query:   54 GGLQELLEDVTSRAYKIGKGHLQILICVMSRKD-DGYKYLKWISETKVGVVTQCCLSTNANKGKGQDQYXXXXXXXXXXXXGGSNAELIDRLPYFKGEDHVMFVGADVNHPGASNKTSPSIAAVVATVNWPAANRYVARVRPQDHRTEKILNFAGMCLEVVKSYVQLNKVRPQEIIVFRDGVSEGQFDMVLNEELVPLKMAFRSMD--YHPRITLIVAQKRHQTRLF 725
            G ++EL   +  +A ++G      L  ++ +   + Y  +K +  T +GV +QC +S +  + K   QY            GG N  LI +     G    + +G DV HPG    T  SIA++VA+V+     +Y A  R Q    E I     + + +++ +  + K +PQ II FRDG SEGQF  V+N+EL  +K A  S+   Y+P+I +   QKRH  R F
Sbjct:  477 GSVEELCITLYKKAEQVGNAPPDYLFFILDKNSPEPYGSIKRVCNTMLGVPSQCAISKHILQSK--PQYCANLGMKINVKVGGINCSLIPKSNPL-GNVPTLILGGDVYHPGVG-ATGVSIASIVASVDLNGC-KYTAVSRSQPRHQEVIEGMKDIVVYLLQGFRAMTKQQPQRIIYFRDGTSEGQFLSVINDELSQIKEACHSLSPKYNPKILVCTTQKRHHARFF 698          
BLAST of FC868765 vs. ExPASy Swiss-Prot
Match: AGO4_XENLA (Protein argonaute-4 OS=Xenopus laevis GN=eif2c4 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.139e-21
Identity = 74/215 (34.42%), Postives = 105/215 (48.84%), Query Frame = 3
Query:  117 LQILICVMSRKDDGYKYLKWISETKVGVVTQCCLSTNANKGKGQDQYXXXXXXXXXXXXGGSNAELIDRLPYFKGEDHVMFVGADVNHPGASNKTSPSIAAVVATVNWPAANRYVARVRPQDHRTEK----------ILNFAGMCLEVVKSYVQLNKVRPQEIIVFRDGVSEGQFDMVLNEELVPLKMAFRSM--DYHPRITLIVAQKRHQTRLF 725
            LQ+++ ++  K   Y  +K + +T +G+ TQC    N  K   Q               GG N  L+        +  V+F+GADV HP A +   PSIAAVV +++    +RY A VR Q  R E           I +   M  E++  + +  + +P  II +R GVSEGQ   V   EL+ ++ A  S+  DY P IT IV QKRH TRLF
Sbjct:  530 LQLIVVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQT--LSNLCLKINAKLGGINNVLVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMD-GHPSRYCATVRVQTSRQETTQELLYSQEVIQDLCNMVRELLIQFYKSTRFKPTRIIYYRGGVSEGQMKQVAWPELMAIRKACISLEEDYRPGITYIVVQKRHHTRLF 741          
BLAST of FC868765 vs. ExPASy Swiss-Prot
Match: AGO16_ORYSJ (Protein argonaute 16 OS=Oryza sativa subsp. japonica GN=AGO16 PE=2 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.139e-21
Identity = 78/256 (30.47%), Postives = 126/256 (49.22%), Query Frame = 3
Query:   12 VLSEPASMRLFSNVGGLQELLEDVTSRAYKIGKGHLQILICVMSRKDDGYKYLKWISET--KVGVVTQCCLSTNANKGKGQDQYXXXXXXXXXXXXGGSNAELI----DRLPYFKGEDHVMFVGADVNHPGASNKTSPSIAAVVATVNWPAANRYVARVRPQDHRTEKILNFA---------GMCLEVVKSYVQLNKVR-PQEIIVFRDGVSEGQFDMVLNEELVPLKMAFRSMDYH--PRITLIVAQKRHQTRLF 725
            ++ E +  R  + V  ++ + E V +       G  + L+CV+  + +   Y  W  +   ++G++TQC + +     K  DQY            GG N++L       +P    +   + +G DV+H        PSIAAVV +  WP  +RY A VR Q  + E I +           G+  E++  + + ++ R P++II+FRDGVSE QF  VLN EL  +  A++ MD    P+ T+I+AQK H T+LF
Sbjct:  502 LVDEDSQSRRCTPVVRVESMFEKVKANL----PGPPEFLLCVLPERKNCDLYGPWKKKNLHEMGIITQCIVPSV----KMNDQYYTNVLLKINAKLGGMNSKLSLEHRHMIPIVN-QTPTLILGMDVSHGSPGRADVPSIAAVVGSRCWPLISRYRASVRTQSPKVEMIDSLFKPLDDGKDDGIIRELLLDFYKTSQQRKPKQIIIFRDGVSESQFSQVLNVELNQIIKAYQYMDQGPIPKFTVIIAQKNHHTKLF 748          
BLAST of FC868765 vs. ExPASy Swiss-Prot
Match: AGO4B_ORYSJ (Protein argonaute 4B OS=Oryza sativa subsp. japonica GN=AGO4B PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.247e-20
Identity = 76/254 (29.92%), Postives = 117/254 (46.06%), Query Frame = 3
Query:   12 VLSEPASMRLFSNVGGLQELLEDVTSRAYKIGKGHLQILICVMSRKDDGYKYLKWISE--TKVGVVTQCCLSTNANKGKGQDQYXXXXXXXXXXXXGGSNAEL-IDRLPYFK--GEDHVMFVGADVNHPGASNKTSPSIAAVVATVNWPAANRYVARVRPQDHRTEKILNFA--------GMCLE-VVKSYVQLNKVRPQEIIVFRDGVSEGQFDMVLNEELVPLKMAFRSMD--YHPRITLIVAQKRHQTRLF 725
            V  E  S+R       + ++ E + S+      G  + L+C++  + +   Y  W  +   + G+VTQC      N     DQY            GG N+ L I+  P      +   + +G DV+H        PSIAAVV++  WP  ++Y A V  Q  + E + +          G+  E ++  Y    K +P  +IVFRDGVSE QF  V+N EL  +  A + +D  + P+ T+IVAQK H T+ F
Sbjct:  532 VFEESPSLRRAPVSRRVDDMFEQIKSKL----PGAPKFLLCLLPERKNCEVYGPWKRKCLAEFGIVTQCLAPQRVN-----DQYLLNLLLKINAKLGGINSLLQIEASPSIPLVSKTPTIILGMDVSHGQPGQSDRPSIAAVVSSRQWPLISKYRASVHTQSPKLEMMSSLFKPRGTEDDGLIRESLIDFYTSSGKRKPDHVIVFRDGVSESQFTQVINIELDQIIEACKFLDEKWSPKFTVIVAQKNHHTKFF 776          
The following BLAST results are available for this feature:
BLAST of FC868765 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
AGO17_ORYSJ7.131e-2433.88Protein argonaute 17 OS=Oryza sativa subsp. japoni... [more]
AGO1_HUMAN1.589e-2335.61Protein argonaute-1 OS=Homo sapiens GN=EIF2C1 PE=1... [more]
AGO4A_ORYSJ1.756e-2231.76Protein argonaute 4A OS=Oryza sativa subsp. japoni... [more]
AGO4_CHICK6.675e-2234.42Protein argonaute-4 OS=Gallus gallus GN=EIF2C4 PE=... [more]
AGO4_MOUSE8.717e-2233.95Protein argonaute-4 OS=Mus musculus GN=Eif2c4 PE=2... [more]
AGO4_HUMAN8.717e-2234.42Protein argonaute-4 OS=Homo sapiens GN=EIF2C4 PE=1... [more]
AGO1_SCHPO8.717e-2231.72Protein argonaute OS=Schizosaccharomyces pombe GN=... [more]
AGO4_XENLA1.139e-2134.42Protein argonaute-4 OS=Xenopus laevis GN=eif2c4 PE... [more]
AGO16_ORYSJ1.139e-2130.47Protein argonaute 16 OS=Oryza sativa subsp. japoni... [more]
AGO4B_ORYSJ6.247e-2029.92Protein argonaute 4B OS=Oryza sativa subsp. japoni... [more]

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Properties
Property NameValue
Genbank descriptionC31004E05EF AbioticL1 Citrus clementina cDNA clone C31004E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868765 ID=FC868765; Name=FC868765; organism=Citrus clementina; type=EST; length=732bp
TGCAGTGGCCTGTCTTATCTGAACCTGCTTCAATGCGTCTGTTCTCTAAT
GTTGGAGGGCTTCAGGAACTCCTTGAAGATGTTACTTCAAGGGCTTACAA
AATTGGCAAAGGTCATCTGCAGATTCTTATTTGTGTAATGTCTCGGAAGG
ATGACGGTTACAAGTATCTCAAGTGGATTTCTGAGACTAAAGTTGGTGTG
GTGACTCAGTGTTGTTTGTCCACGAATGCCAACAAAGGTAAAGGTCAAGA
TCAATATCTTGCCAATCTTGCACTCAAGATCAATGCGAAGCTTGGAGGCA
GCAACGCAGAGCTCATTGACAGGCTGCCTTACTTCAAGGGTGAAGACCAT
GTTATGTTTGTGGGTGCAGATGTTAATCATCCTGGTGCGAGTAACAAAAC
TAGTCCATCTATAGCAGCTGTTGTTGCCACTGTAAATTGGCCTGCTGCAA
ACAGATATGTGGCAAGGGTGCGCCCCCAAGATCATAGGACAGAGAAAATT
CTGAATTTTGCTGGCATGTGCTTGGAGGTTGTTAAATCTTATGTTCAGTT
GAATAAAGTCAGGCCACAAGAGATTATAGTGTTTCGAGATGGAGTAAGCG
AGGGCCAGTTCGATATGGTTCTCAATGAAGAGTTGGTACCACTAAAGATG
GCATTCAGATCAATGGATTACCACCCAAGAATCACACTTATTGTGGCCCA
GAAGCGACATCAAACTCGTCTATTTCCAAGGG
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