FC868766

Overview
NameFC868766
Unique NameFC868766
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868766 vs. ExPASy Swiss-Prot
Match: GLNA1_BRAJA (Glutamine synthetase 1 OS=Bradyrhizobium japonicum GN=glnA PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.669e-12
Identity = 63/232 (27.16%), Postives = 97/232 (41.81%), Query Frame = 1
Query:   58 DGTNLSGTGEIR-----LMPDLSTRWRIPWQKQEEMIMADMHLKP--GEPWEYCPREALRKVSRLLKEE-FNLVLNAGFEIEFYLLKSV----------LREGKEEWVPIDFTPY---------------CSTAAYDAVSPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVATKAADNLIFTREVVRAVARKHGLLATFVPKFALDDIGSGSHVHLSLWQNGENVF 654
            DG++++G   I      LMPD  T    P+  +  M++    L+P  GEP+   PR   +K   ++K       +  G E EF++   V           R    E      T Y                     D+V  +  E+L  +  + + VE+ H E    Q E+ +     T  AD+L   +  +  VA  +G  ATF+PK    D GSG HVH S+W++G+ VF
Sbjct:   52 DGSSIAGWKAINESDMCLMPDPVTATIDPFFAETTMVITCDVLEPTTGEPYNRDPRGIAKKAEAMVKSMGVGDTVFVGPEAEFFVFDDVRFSSSPYNTGFRLDSSELPTNTDTEYEGGNLGHRVRTKGGYFPVPPQDSVQDMRSEMLGAMAKMGVKVEKHHHEVASAQHELGMKFDTLTLMADHLQIYKYCIHQVAHIYGKTATFMPKPVYGDNGSGMHVHQSIWKDGKPVF 283          
BLAST of FC868766 vs. ExPASy Swiss-Prot
Match: GLNA_ANASP (Glutamine synthetase OS=Anabaena sp. (strain PCC 7120) GN=glnA PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 5.947e-12
Identity = 68/259 (26.25%), Postives = 117/259 (45.17%), Query Frame = 1
Query:   34 TSAVDG-PADGTNLSG-----TGEIRLMPDLSTRWRIPWQKQEEMIMADMHLKP--GEPWEYCPREALRKVSRLL-------------KEEFNLVLNAGFEIE----FYLLKSVL------REGKEEWVPIDFTP-----YCSTAAYDAVSPVFQEVLADLHSLNISVEQLHAE-AGKGQFEIALGHTVATKAADNLIFTREVVRAVARKHGLLATFVPKFALDDIGSGSHVHLSLWQNGENVFMASDSSSKHGMSSVG 699
            +S  DG P DG+++ G       ++ ++ D +T W  P+ +   + +     +P  GE +  CPR   +K    L             + EF +  +A F       +Y L SV       +EG  +   + + P     Y   +  D+   +  E+L  +  L + +E+ H E A  GQ E+        +AAD L+  + V++ VA+K+G   TF+PK    D GSG H H S+W++G+ +F     +   G+S +G
Sbjct:   43 SSFSDGVPFDGSSIRGWKAINESDMTMVLDPNTAWIDPFMEVPTLSIVCSIKEPRTGEWYNRCPRVIAQKAIDYLVSTGIGDTAFFGPEAEFFIFDSARFAQNANEGYYFLDSVEGAWNSGKEGTADKPNLAYKPRFKEGYFPVSPTDSFQDIRTEMLLTMAKLGVPIEKHHHEVATGGQCELGFRFGKLIEAADWLMIYKYVIKNVAKKYGKTVTFMPKPIFGDNGSGMHCHQSIWKDGKPLFAGDQYA---GLSEMG 298          
BLAST of FC868766 vs. ExPASy Swiss-Prot
Match: GLNA_HAEIN (Glutamine synthetase OS=Haemophilus influenzae GN=glnA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.951e-11
Identity = 47/143 (32.87%), Postives = 70/143 (48.95%), Query Frame = 1
Query:  244 FNLVLN-AGFEIE----FYLLKSVLREGKEEWVPIDFTPYCSTAAYDAVSPVFQEVLADLHSLNISVEQLHAE-AGKGQFEIALGHTVATKAADNLIFTREVVRAVARKHGLLATFVPKFALDDIGSGSHVHLSLWQNGENVF 654
            FN+ +N A F I+     +       EG   + P+    YC+ A  D+   +  E+   L  + + +E  H E A  GQ EIA      T  AD     + VV+ VA +HG  A F+PK    D GSG H ++SL ++G+N+F
Sbjct:  145 FNVSMNKASFSIDDIEAAWNTNKKYEEGNNAYRPLKKGGYCAVAPIDSAHDIRSEMCLILEEMGLVIEAHHHEVATAGQNEIATKFNTLTLKADETQIYKHVVQNVALEHGKTACFMPKPITGDNGSGMHCNMSLSKDGKNIF 287          
BLAST of FC868766 vs. ExPASy Swiss-Prot
Match: GLNA_PASMU (Glutamine synthetase OS=Pasteurella multocida GN=glnA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 41/117 (35.04%), Postives = 60/117 (51.28%), Query Frame = 1
Query:  307 EGKEEWVPIDFTPYCSTAAYDAVSPVFQEVLADLHSLNISVEQLHAE-AGKGQFEIALGHTVATKAADNLIFTREVVRAVARKHGLLATFVPKFALDDIGSGSHVHLSLWQNGENVF 654
            +G   + P+    YC+ A  D+   +  E+   L  + + +E  H E A  GQ EIA      T  AD     + VV+ VA +HG  A F+PK    D GSG H ++SL ++G+NVF
Sbjct:  171 DGNNAYRPLKKGGYCAVAPIDSAHDIRSEMCLILEEMGLVIEAHHHEVATAGQNEIATRFNTLTTKADETQIYKYVVQNVAYEHGKTACFMPKPITGDNGSGMHCNMSLSKDGKNVF 287          
The following BLAST results are available for this feature:
BLAST of FC868766 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
GLNA1_BRAJA2.669e-1227.16Glutamine synthetase 1 OS=Bradyrhizobium japonicum... [more]
GLNA_ANASP5.947e-1226.25Glutamine synthetase OS=Anabaena sp. (strain PCC 7... [more]
GLNA_HAEIN2.951e-1132.87Glutamine synthetase OS=Haemophilus influenzae GN=... [more]
GLNA_PASMU8.587e-1135.04Glutamine synthetase OS=Pasteurella multocida GN=g... [more]

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Properties
Property NameValue
Genbank descriptionC31004E06EF AbioticL1 Citrus clementina cDNA clone C31004E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868766 ID=FC868766; Name=FC868766; organism=Citrus clementina; type=EST; length=707bp
GGTGTTGGTTTGACATTTGCATGCATGGGAATGACTTCAGCTGTTGATGG
TCCAGCTGATGGGACAAATCTGTCTGGAACTGGTGAGATCAGATTGATGC
CTGATTTATCGACTAGATGGAGAATTCCATGGCAAAAACAAGAGGAGATG
ATTATGGCTGACATGCATCTTAAACCTGGTGAACCGTGGGAATATTGCCC
AAGAGAGGCTCTACGAAAAGTTTCAAGACTTCTGAAAGAGGAGTTTAATT
TGGTACTGAATGCAGGATTTGAAATTGAATTTTATCTCTTAAAGAGTGTA
CTTAGGGAAGGGAAAGAAGAATGGGTGCCAATTGACTTCACACCTTACTG
CTCTACAGCAGCATATGATGCTGTTTCCCCTGTATTTCAAGAAGTCCTCG
CTGACCTTCACTCCTTGAATATTTCTGTGGAACAGTTACATGCAGAAGCT
GGGAAAGGTCAGTTTGAAATTGCTCTGGGCCACACTGTTGCTACAAAAGC
TGCTGACAATTTGATTTTCACACGTGAAGTTGTAAGGGCTGTTGCAAGGA
AACATGGACTGTTGGCAACTTTTGTTCCAAAGTTTGCATTAGATGACATT
GGTTCTGGATCCCATGTGCATCTCAGCTTGTGGCAGAATGGAGAAAATGT
ATTTATGGCATCTGACAGTTCCTCTAAACATGGAATGTCCTCGGTTGGGG
AGAAAGT
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