FC868767
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: NUCL_MOUSE (Nucleolin OS=Mus musculus GN=Ncl PE=1 SV=2) HSP 1 Score: 72.7886 bits (177), Expect = 2.027e-12 Identity = 42/131 (32.06%), Postives = 70/131 (53.44%), Query Frame = 3 Query: 231 QGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKG 623 +GY F+EF S EDA A+ N +++ G+ IR+ + +S LF+ L D E+ L ++F +I+ D +TG+S+GFGF+ ++S E + AA EAM + ++T+ +A K G Sbjct: 524 KGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGSNSRS-QPSKTLFVKGLSEDTTEETLKESFEGS----VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGG 649
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: NUCL_MESAU (Nucleolin OS=Mesocricetus auratus GN=NCL PE=1 SV=2) HSP 1 Score: 69.707 bits (169), Expect = 2.369e-12 Identity = 43/135 (31.85%), Postives = 72/135 (53.33%), Query Frame = 3 Query: 231 QGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN----KASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKG 623 +GY F+EF S EDA A+ N +++ G+ IR+ + S + +S LF+ L D E+ L ++F +I+ D +TG+S+GFGF+ ++S E + AA EAM + ++T+ +A K G Sbjct: 523 KGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRGSPNARS-QPSKTLFVKGLSEDTTEETLKESFEGS----VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGG 652 HSP 2 Score: 23.0978 bits (48), Expect = 2.369e-12 Identity = 11/31 (35.48%), Postives = 16/31 (51.61%), Query Frame = 2 Query: 80 GQHSAERNQDATAYVGNLDPQVTEELLWELF 172 G++S + T + NL TEE L E+F Sbjct: 476 GKNSTWSGESKTLVLSNLSYSATEETLQEVF 506
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: NUCL_RAT (Nucleolin OS=Rattus norvegicus GN=Ncl PE=1 SV=3) HSP 1 Score: 69.707 bits (169), Expect = 2.369e-12 Identity = 43/135 (31.85%), Postives = 72/135 (53.33%), Query Frame = 3 Query: 231 QGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN----KASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKG 623 +GY F+EF S EDA A+ N +++ G+ IR+ + S + +S LF+ L D E+ L ++F +I+ D +TG+S+GFGF+ ++S E + AA EAM + ++T+ +A K G Sbjct: 526 KGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRGSPNARS-QPSKTLFVKGLSEDTTEETLKESFEGS----VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGG 655 HSP 2 Score: 23.0978 bits (48), Expect = 2.369e-12 Identity = 11/31 (35.48%), Postives = 16/31 (51.61%), Query Frame = 2 Query: 80 GQHSAERNQDATAYVGNLDPQVTEELLWELF 172 G++S + T + NL TEE L E+F Sbjct: 479 GKNSTWSGESKTLVLSNLSYSATEETLQEVF 509
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: YG41_SCHPO (Uncharacterized RNA-binding protein C23E6.01c OS=Schizosaccharomyces pombe GN=SPBC23E6.01c PE=1 SV=2) HSP 1 Score: 70.0922 bits (170), Expect = 3.111e-12 Identity = 51/156 (32.69%), Postives = 80/156 (51.28%), Query Frame = 3 Query: 180 GPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPI-------RVNKASQD---KKSLDVGA--NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 611 G V V + ++R T ++ GY FVEF S +A A+ + N KPI ++N AS +KS+ + ++F+G+L P+V+E +Y F++ + KIM DP T SRG+GF+ + +A+ M GQ +R I V A K Sbjct: 117 GKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAMSMNN------KPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPK 266 HSP 2 Score: 22.3274 bits (46), Expect = 3.111e-12 Identity = 13/51 (25.49%), Postives = 23/51 (45.10%), Query Frame = 2 Query: 50 IAPGVGANLLGQHSAERN----------QDATAYVGNLDPQVTEELLWELF 172 I+P + +N G N Q T ++G L+P VTE + +++ Sbjct: 63 ISPNMASNESGNSENTSNYGSSRDENVYQKTTLWMGELEPWVTEAFIQQVW 113
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: RBM7_MOUSE (RNA-binding protein 7 OS=Mus musculus GN=Rbm7 PE=1 SV=1) HSP 1 Score: 56.6102 bits (135), Expect = 5.345e-12 Identity = 31/79 (39.24%), Postives = 46/79 (58.23%), Query Frame = 3 Query: 174 QAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN-KASQDKKSLDVGANL---FIGNLDP 398 QAGPV+ V +PKD+ L Q + FV F+ E YA+ +LN IKL+G+PI++ ++ S D + +GNL P Sbjct: 32 QAGPVIKVKIPKDKDGKLKQ-FAFVNFKHEVSVPYAMNLLNGIKLFGRPIKIQFRSGSSHASQDASVSYPQHHVGNLSP 109 HSP 2 Score: 35.039 bits (79), Expect = 5.345e-12 Identity = 16/28 (57.14%), Postives = 21/28 (75.00%), Query Frame = 2 Query: 89 SAERNQDATAYVGNLDPQVTEELLWELF 172 +A D T +VGNL+ +VTEELL+ELF Sbjct: 3 AAAAEADRTLFVGNLETKVTEELLFELF 30
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: NUCL_PONAB (Nucleolin OS=Pongo abelii GN=NCL PE=2 SV=3) HSP 1 Score: 68.1662 bits (165), Expect = 6.732e-12 Identity = 43/135 (31.85%), Postives = 71/135 (52.59%), Query Frame = 3 Query: 231 QGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN----KASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKG 623 +GY F+EF S EDA A+ N ++ G+ IR+ + S + +S LF+ L D E+ L ++F +I+ D +TG+S+GFGF+ ++S E + AA EAM + ++T+ +A K G Sbjct: 525 KGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARS-QPSKTLFVKGLSEDTTEETLKESFDGS----VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGG 654 HSP 2 Score: 23.0978 bits (48), Expect = 6.732e-12 Identity = 11/31 (35.48%), Postives = 16/31 (51.61%), Query Frame = 2 Query: 80 GQHSAERNQDATAYVGNLDPQVTEELLWELF 172 G++S + T + NL TEE L E+F Sbjct: 478 GKNSTWSGESKTLVLSNLSYSATEETLQEVF 508
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: NUCL_MACFA (Nucleolin OS=Macaca fascicularis GN=NCL PE=2 SV=3) HSP 1 Score: 68.1662 bits (165), Expect = 6.732e-12 Identity = 43/135 (31.85%), Postives = 71/135 (52.59%), Query Frame = 3 Query: 231 QGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN----KASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKG 623 +GY F+EF S EDA A+ N ++ G+ IR+ + S + +S LF+ L D E+ L ++F +I+ D +TG+S+GFGF+ ++S E + AA EAM + ++T+ +A K G Sbjct: 524 KGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARS-QPSKTLFVKGLSEDTTEETLKESFDGS----VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGG 653 HSP 2 Score: 23.0978 bits (48), Expect = 6.732e-12 Identity = 11/31 (35.48%), Postives = 16/31 (51.61%), Query Frame = 2 Query: 80 GQHSAERNQDATAYVGNLDPQVTEELLWELF 172 G++S + T + NL TEE L E+F Sbjct: 477 GKNSTWSGESKTLVLSNLSYSATEETLQEVF 507
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: NUCL_HUMAN (Nucleolin OS=Homo sapiens GN=NCL PE=1 SV=3) HSP 1 Score: 68.1662 bits (165), Expect = 6.733e-12 Identity = 43/135 (31.85%), Postives = 71/135 (52.59%), Query Frame = 3 Query: 231 QGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN----KASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKG 623 +GY F+EF S EDA A+ N ++ G+ IR+ + S + +S LF+ L D E+ L ++F +I+ D +TG+S+GFGF+ ++S E + AA EAM + ++T+ +A K G Sbjct: 523 KGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARS-QPSKTLFVKGLSEDTTEETLKESFDGS----VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGG 652 HSP 2 Score: 23.0978 bits (48), Expect = 6.733e-12 Identity = 11/31 (35.48%), Postives = 16/31 (51.61%), Query Frame = 2 Query: 80 GQHSAERNQDATAYVGNLDPQVTEELLWELF 172 G++S + T + NL TEE L E+F Sbjct: 476 GKNSTWSGESKTLVLSNLSYSATEETLQEVF 506
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: SXL_CERCA (Sex-lethal homolog OS=Ceratitis capitata GN=SXL PE=2 SV=2) HSP 1 Score: 70.8626 bits (172), Expect = 7.703e-12 Identity = 43/127 (33.86%), Postives = 67/127 (52.76%), Query Frame = 3 Query: 180 GPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN 560 GP+ + +D T GY FV+F +E D+ AIK LN I + K ++V+ A +S+ NL++ NL + + L F +G+IV I+RD TG RG F+ ++ E + AI A+N Sbjct: 134 GPINTCRIMRDYKTGYSFGYAFVDFAAETDSQRAIKSLNGITVRNKRLKVSYARPGGESIK-DTNLYVTNLPRTITDDQLDTIFGKYGMIV-QKNILRDKLTGKPRGVAFVRFNKREEAQEAISALN 258
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: ELAV_DROVI (Protein elav OS=Drosophila virilis GN=elav PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.006e-11 Identity = 38/110 (34.55%), Postives = 63/110 (57.27%), Query Frame = 3 Query: 234 GYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNG 563 GYGFV + +DA+ A+ VLN ++L K I+V+ A ++ GANL++ L + ++ L F+ FG I+T+ + + ++G GFI +D E + AI A+NG Sbjct: 240 GYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAIK-GANLYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAIIALNG 348 The following BLAST results are available for this feature:
BLAST of FC868767 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 126
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Sequences
The
following sequences are available for this feature:
EST sequence >FC868767 ID=FC868767; Name=FC868767; organism=Citrus clementina; type=EST; length=704bpback to top |