FC868767

Overview
NameFC868767
Unique NameFC868767
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: NUCL_MOUSE (Nucleolin OS=Mus musculus GN=Ncl PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.027e-12
Identity = 42/131 (32.06%), Postives = 70/131 (53.44%), Query Frame = 3
Query:  231 QGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKG 623
            +GY F+EF S EDA  A+   N +++ G+ IR+     + +S      LF+  L  D  E+ L ++F          +I+ D +TG+S+GFGF+ ++S E + AA EAM    +   ++T+ +A  K   G
Sbjct:  524 KGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGSNSRS-QPSKTLFVKGLSEDTTEETLKESFEGS----VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGG 649          
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: NUCL_MESAU (Nucleolin OS=Mesocricetus auratus GN=NCL PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.369e-12
Identity = 43/135 (31.85%), Postives = 72/135 (53.33%), Query Frame = 3
Query:  231 QGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN----KASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKG 623
            +GY F+EF S EDA  A+   N +++ G+ IR+     + S + +S      LF+  L  D  E+ L ++F          +I+ D +TG+S+GFGF+ ++S E + AA EAM    +   ++T+ +A  K   G
Sbjct:  523 KGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRGSPNARS-QPSKTLFVKGLSEDTTEETLKESFEGS----VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGG 652          

HSP 2 Score: 23.0978 bits (48), Expect = 2.369e-12
Identity = 11/31 (35.48%), Postives = 16/31 (51.61%), Query Frame = 2
Query:   80 GQHSAERNQDATAYVGNLDPQVTEELLWELF 172
            G++S    +  T  + NL    TEE L E+F
Sbjct:  476 GKNSTWSGESKTLVLSNLSYSATEETLQEVF 506          
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: NUCL_RAT (Nucleolin OS=Rattus norvegicus GN=Ncl PE=1 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 2.369e-12
Identity = 43/135 (31.85%), Postives = 72/135 (53.33%), Query Frame = 3
Query:  231 QGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN----KASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKG 623
            +GY F+EF S EDA  A+   N +++ G+ IR+     + S + +S      LF+  L  D  E+ L ++F          +I+ D +TG+S+GFGF+ ++S E + AA EAM    +   ++T+ +A  K   G
Sbjct:  526 KGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRGSPNARS-QPSKTLFVKGLSEDTTEETLKESFEGS----VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGG 655          

HSP 2 Score: 23.0978 bits (48), Expect = 2.369e-12
Identity = 11/31 (35.48%), Postives = 16/31 (51.61%), Query Frame = 2
Query:   80 GQHSAERNQDATAYVGNLDPQVTEELLWELF 172
            G++S    +  T  + NL    TEE L E+F
Sbjct:  479 GKNSTWSGESKTLVLSNLSYSATEETLQEVF 509          
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: YG41_SCHPO (Uncharacterized RNA-binding protein C23E6.01c OS=Schizosaccharomyces pombe GN=SPBC23E6.01c PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 3.111e-12
Identity = 51/156 (32.69%), Postives = 80/156 (51.28%), Query Frame = 3
Query:  180 GPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPI-------RVNKASQD---KKSLDVGA--NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 611
            G  V V + ++R T ++ GY FVEF S  +A  A+ + N      KPI       ++N AS     +KS+   +  ++F+G+L P+V+E  +Y  F++      + KIM DP T  SRG+GF+ +       +A+  M GQ   +R I V  A  K
Sbjct:  117 GKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAMSMNN------KPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPK 266          

HSP 2 Score: 22.3274 bits (46), Expect = 3.111e-12
Identity = 13/51 (25.49%), Postives = 23/51 (45.10%), Query Frame = 2
Query:   50 IAPGVGANLLGQHSAERN----------QDATAYVGNLDPQVTEELLWELF 172
            I+P + +N  G      N          Q  T ++G L+P VTE  + +++
Sbjct:   63 ISPNMASNESGNSENTSNYGSSRDENVYQKTTLWMGELEPWVTEAFIQQVW 113          
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: RBM7_MOUSE (RNA-binding protein 7 OS=Mus musculus GN=Rbm7 PE=1 SV=1)

HSP 1 Score: 56.6102 bits (135), Expect = 5.345e-12
Identity = 31/79 (39.24%), Postives = 46/79 (58.23%), Query Frame = 3
Query:  174 QAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN-KASQDKKSLDVGANL---FIGNLDP 398
            QAGPV+ V +PKD+   L Q + FV F+ E    YA+ +LN IKL+G+PI++  ++     S D   +     +GNL P
Sbjct:   32 QAGPVIKVKIPKDKDGKLKQ-FAFVNFKHEVSVPYAMNLLNGIKLFGRPIKIQFRSGSSHASQDASVSYPQHHVGNLSP 109          

HSP 2 Score: 35.039 bits (79), Expect = 5.345e-12
Identity = 16/28 (57.14%), Postives = 21/28 (75.00%), Query Frame = 2
Query:   89 SAERNQDATAYVGNLDPQVTEELLWELF 172
            +A    D T +VGNL+ +VTEELL+ELF
Sbjct:    3 AAAAEADRTLFVGNLETKVTEELLFELF 30          
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: NUCL_PONAB (Nucleolin OS=Pongo abelii GN=NCL PE=2 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 6.732e-12
Identity = 43/135 (31.85%), Postives = 71/135 (52.59%), Query Frame = 3
Query:  231 QGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN----KASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKG 623
            +GY F+EF S EDA  A+   N  ++ G+ IR+     + S + +S      LF+  L  D  E+ L ++F          +I+ D +TG+S+GFGF+ ++S E + AA EAM    +   ++T+ +A  K   G
Sbjct:  525 KGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARS-QPSKTLFVKGLSEDTTEETLKESFDGS----VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGG 654          

HSP 2 Score: 23.0978 bits (48), Expect = 6.732e-12
Identity = 11/31 (35.48%), Postives = 16/31 (51.61%), Query Frame = 2
Query:   80 GQHSAERNQDATAYVGNLDPQVTEELLWELF 172
            G++S    +  T  + NL    TEE L E+F
Sbjct:  478 GKNSTWSGESKTLVLSNLSYSATEETLQEVF 508          
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: NUCL_MACFA (Nucleolin OS=Macaca fascicularis GN=NCL PE=2 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 6.732e-12
Identity = 43/135 (31.85%), Postives = 71/135 (52.59%), Query Frame = 3
Query:  231 QGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN----KASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKG 623
            +GY F+EF S EDA  A+   N  ++ G+ IR+     + S + +S      LF+  L  D  E+ L ++F          +I+ D +TG+S+GFGF+ ++S E + AA EAM    +   ++T+ +A  K   G
Sbjct:  524 KGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARS-QPSKTLFVKGLSEDTTEETLKESFDGS----VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGG 653          

HSP 2 Score: 23.0978 bits (48), Expect = 6.732e-12
Identity = 11/31 (35.48%), Postives = 16/31 (51.61%), Query Frame = 2
Query:   80 GQHSAERNQDATAYVGNLDPQVTEELLWELF 172
            G++S    +  T  + NL    TEE L E+F
Sbjct:  477 GKNSTWSGESKTLVLSNLSYSATEETLQEVF 507          
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: NUCL_HUMAN (Nucleolin OS=Homo sapiens GN=NCL PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 6.733e-12
Identity = 43/135 (31.85%), Postives = 71/135 (52.59%), Query Frame = 3
Query:  231 QGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN----KASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKG 623
            +GY F+EF S EDA  A+   N  ++ G+ IR+     + S + +S      LF+  L  D  E+ L ++F          +I+ D +TG+S+GFGF+ ++S E + AA EAM    +   ++T+ +A  K   G
Sbjct:  523 KGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARS-QPSKTLFVKGLSEDTTEETLKESFDGS----VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGG 652          

HSP 2 Score: 23.0978 bits (48), Expect = 6.733e-12
Identity = 11/31 (35.48%), Postives = 16/31 (51.61%), Query Frame = 2
Query:   80 GQHSAERNQDATAYVGNLDPQVTEELLWELF 172
            G++S    +  T  + NL    TEE L E+F
Sbjct:  476 GKNSTWSGESKTLVLSNLSYSATEETLQEVF 506          
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: SXL_CERCA (Sex-lethal homolog OS=Ceratitis capitata GN=SXL PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.703e-12
Identity = 43/127 (33.86%), Postives = 67/127 (52.76%), Query Frame = 3
Query:  180 GPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN 560
            GP+    + +D  T    GY FV+F +E D+  AIK LN I +  K ++V+ A    +S+    NL++ NL   + +  L   F  +G+IV    I+RD  TG  RG  F+ ++  E +  AI A+N
Sbjct:  134 GPINTCRIMRDYKTGYSFGYAFVDFAAETDSQRAIKSLNGITVRNKRLKVSYARPGGESIK-DTNLYVTNLPRTITDDQLDTIFGKYGMIV-QKNILRDKLTGKPRGVAFVRFNKREEAQEAISALN 258          
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: ELAV_DROVI (Protein elav OS=Drosophila virilis GN=elav PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.006e-11
Identity = 38/110 (34.55%), Postives = 63/110 (57.27%), Query Frame = 3
Query:  234 GYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNG 563
            GYGFV +   +DA+ A+ VLN ++L  K I+V+ A     ++  GANL++  L   + ++ L   F+ FG I+T+  +    +   ++G GFI +D  E +  AI A+NG
Sbjct:  240 GYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAIK-GANLYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAIIALNG 348          
The following BLAST results are available for this feature:
BLAST of FC868767 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 126
Match NameE-valueIdentityDescription
NUCL_MOUSE2.027e-1232.06Nucleolin OS=Mus musculus GN=Ncl PE=1 SV=2[more]
NUCL_MESAU2.369e-1231.85Nucleolin OS=Mesocricetus auratus GN=NCL PE=1 SV=2[more]
NUCL_RAT2.369e-1231.85Nucleolin OS=Rattus norvegicus GN=Ncl PE=1 SV=3[more]
YG41_SCHPO3.111e-1232.69Uncharacterized RNA-binding protein C23E6.01c OS=S... [more]
RBM7_MOUSE5.345e-1239.24RNA-binding protein 7 OS=Mus musculus GN=Rbm7 PE=1... [more]
NUCL_PONAB6.732e-1231.85Nucleolin OS=Pongo abelii GN=NCL PE=2 SV=3[more]
NUCL_MACFA6.732e-1231.85Nucleolin OS=Macaca fascicularis GN=NCL PE=2 SV=3[more]
NUCL_HUMAN6.733e-1231.85Nucleolin OS=Homo sapiens GN=NCL PE=1 SV=3[more]
SXL_CERCA7.703e-1233.86Sex-lethal homolog OS=Ceratitis capitata GN=SXL PE... [more]
ELAV_DROVI1.006e-1134.55Protein elav OS=Drosophila virilis GN=elav PE=3 SV... [more]

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Properties
Property NameValue
Genbank descriptionC31004E08EF AbioticL1 Citrus clementina cDNA clone C31004E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868767 ID=FC868767; Name=FC868767; organism=Citrus clementina; type=EST; length=704bp
GAAGTAGAAGAAGAAGAAGTAATTCCGAGTAAAAGGCATGACCACTCGAA
TCGCTCCTGGAGTTGGGGCCAATTTGCTGGGCCAACACTCCGCCGAGAGA
AATCAAGATGCCACAGCTTATGTCGGCAATCTCGATCCCCAGGTTACTGA
GGAGCTACTTTGGGAGTTGTTTTCAAGCAGGTCCTGTTGTTAATGTGTAT
GTTCCAAAAGATAGAGTGACAAACCTTCATCAAGGATACGGATTTGTAGA
GTTCCGAAGTGAGGAAGATGCTGATTATGCAATAAAGGTGCTGAATATGA
TAAAGCTTTATGGGAAGCCGATACGTGTGAATAAGGCATCCCAAGACAAA
AAGAGCTTAGATGTGGGGGCAAACCTTTTTATTGGAAACCTTGACCCAGA
TGTGGATGAGAAACTACTATATGATACATTCAGTGCGTTTGGAGTCATTG
TTACAAATCCCAAGATTATGCGAGATCCTGACACTGGAAATTCTCGTGGT
TTTGGTTTCATTAGCTATGATTCCTTTGAGGCATCCGATGCAGCTATTGA
GGCAATGAATGGCCAATACCTTTGCAACCGTCAAATTACTGTCTCATATG
CATATAAGAAAGACACTAAAGGAGAGCGCCATGGTACTCCGGCAGAGAGA
ATTTTGGCGGCAAACAATCCGAGTTCCCAGAAGAGTAGGCCCACACTTTA
TTTG
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