FC868767
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: ELAV_DROME (Protein elav OS=Drosophila melanogaster GN=elav PE=1 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.006e-11 Identity = 38/110 (34.55%), Postives = 63/110 (57.27%), Query Frame = 3 Query: 234 GYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNG 563 GYGFV + +DA+ A+ VLN ++L K I+V+ A ++ GANL++ L + ++ L F+ FG I+T+ + + ++G GFI +D E + AI A+NG Sbjct: 204 GYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAIK-GANLYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAIIALNG 312
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: GRP_HORVU (Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare GN=blt801 PE=1 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.716e-11 Identity = 39/88 (44.32%), Postives = 55/88 (62.50%), Query Frame = 3 Query: 360 DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKG 623 DV F+G L D++ L + FS +G ++ + KI+ D +TG SRGFGF+++ S EA AIEAMNGQ L R ITV+ A + + G Sbjct: 3 DVEYRCFVGGLRWATDDQSLQNAFSKYGDVIDS-KIITDRETGRSRGFGFVTFASDEAMRQAIEAMNGQDLDGRNITVNEAQSRRSDG 89
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: NUCL_CHICK (Nucleolin OS=Gallus gallus GN=NCL PE=1 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.823e-11 Identity = 43/136 (31.62%), Postives = 71/136 (52.21%), Query Frame = 3 Query: 231 QGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGAN---------LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 611 +GY FVEF + EDA A+ N ++ G+ IR+ +S + ++ A LF+ L D E+ L ++F + +I+ D DTG+S+GFGF+ + S E + AA EAM + ++T+ +A K Sbjct: 498 KGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRLEFSSPSWQKGNMNARGGFNQQSKTLFVRGLSEDTTEETLRESFEGS----ISARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAMEDGEIDGNKVTLDFAKPK 629
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: ROC5_NICSY (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 5.559e-11 Identity = 47/162 (29.01%), Postives = 83/162 (51.23%), Query Frame = 3 Query: 174 QAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKS----------------LDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 611 +AG V NV + DRVT+ +G+ FV S E+A AI++ + ++ G+ ++VN + +D L++ NL + + L D F+ ++ K++ D +G SRGFGFI++ S EA ++A++ MN L R + ++ A +K Sbjct: 136 EAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSWALTSQGLRDAFADQPGFMS-AKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPLRLNVAGQK 296 HSP 2 Score: 20.4014 bits (41), Expect = 5.559e-11 Identity = 10/27 (37.04%), Postives = 14/27 (51.85%), Query Frame = 2 Query: 92 AERNQDATAYVGNLDPQVTEELLWELF 172 +E + YVGNL +T L E+F Sbjct: 108 SESVEGGRLYVGNLPFSMTSSQLSEIF 134
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: RBM7_HUMAN (RNA-binding protein 7 OS=Homo sapiens GN=RBM7 PE=1 SV=1) HSP 1 Score: 52.373 bits (124), Expect = 9.440e-11 Identity = 25/52 (48.08%), Postives = 35/52 (67.31%), Query Frame = 3 Query: 174 QAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRV 329 QAGPV+ V +PKD+ Q + FV F+ E YA+ +LN IKLYG+PI++ Sbjct: 32 QAGPVIKVKIPKDKDGKPKQ-FAFVNFKHEVSVPYAMNLLNGIKLYGRPIKI 82 HSP 2 Score: 35.039 bits (79), Expect = 9.440e-11 Identity = 16/28 (57.14%), Postives = 21/28 (75.00%), Query Frame = 2 Query: 89 SAERNQDATAYVGNLDPQVTEELLWELF 172 +A D T +VGNL+ +VTEELL+ELF Sbjct: 3 AAAAEADRTLFVGNLETKVTEELLFELF 30
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: RBM7_BOVIN (RNA-binding protein 7 OS=Bos taurus GN=RBM7 PE=2 SV=1) HSP 1 Score: 52.373 bits (124), Expect = 9.444e-11 Identity = 30/79 (37.97%), Postives = 45/79 (56.96%), Query Frame = 3 Query: 174 QAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN-KASQDKKSLDVGANL---FIGNLDP 398 QAGPV+ V +PKD+ Q + FV F+ E YA+ +LN IKL+G+PI++ +A S +V + +GN P Sbjct: 32 QAGPVIKVKIPKDKDGKPKQ-FAFVNFKHEVSVPYAMNLLNGIKLFGRPIKIQFRAGSSHASQEVSLSYPQHHVGNSSP 109 HSP 2 Score: 35.039 bits (79), Expect = 9.444e-11 Identity = 16/28 (57.14%), Postives = 21/28 (75.00%), Query Frame = 2 Query: 89 SAERNQDATAYVGNLDPQVTEELLWELF 172 +A D T +VGNL+ +VTEELL+ELF Sbjct: 3 AAAAEADRTLFVGNLETKVTEELLFELF 30 The following BLAST results are available for this feature:
BLAST of FC868767 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 126
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Sequences
The
following sequences are available for this feature:
EST sequence >FC868767 ID=FC868767; Name=FC868767; organism=Citrus clementina; type=EST; length=704bpback to top |