FC868767

Overview
NameFC868767
Unique NameFC868767
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC868767_ssr6 microsatellite FC868767_ssr6:6..17. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig4556 contig Ccv1_Contig4556:81..786. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: PABP1_PONAB (Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.161e-22
Identity = 56/152 (36.84%), Postives = 92/152 (60.53%), Query Frame = 3
Query:  177 AGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS-YAYKKDTKGE 626
            AGP++++ V +D +T    GY +V F+   DA+ A+  +N   + GKP+R+  + +D      G  N+FI NLD  +D K LYDTFSAFG I++   +    D   S+G+GF+ +++ EA++ AIE MNG  L +R++ V  +  +K+ + E
Sbjct:   34 AGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC---DENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182          

HSP 2 Score: 85.1149 bits (209), Expect = 3.947e-16
Identity = 57/175 (32.57%), Postives = 91/175 (52.00%), Query Frame = 3
Query:  147 LRSYFGSCFQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS-----------------QDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK 620
            L+  FG   + GP ++V V  D  +   +G+GFV F   EDA  A+  +N  +L GK I V +A                  QD+ +   G NL++ NLD  +D++ L   FS FG I T+ K+M +   G S+GFGF+ + S E +  A+  MNG+ +  + + V+ A +K+ +
Sbjct:  207 LKDLFG---KFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTI-TSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374          

HSP 3 Score: 82.0333 bits (201), Expect = 3.341e-15
Identity = 49/137 (35.77%), Postives = 83/137 (60.58%), Query Frame = 3
Query:  222 NLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNK-ASQDKKSLDVGA------NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 611
            N  +GYGFV F ++E A+ AI+ +N + L  + + V +  S+ ++  ++GA      N++I N   D+D++ L D F  FG  ++  K+M D ++G S+GFGF+S++  E +  A++ MNG+ L  +QI V  A KK
Sbjct:  135 NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALS-VKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269          
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: PAP1L_HUMAN (Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.249e-22
Identity = 53/142 (37.32%), Postives = 82/142 (57.75%), Query Frame = 3
Query:  177 AGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSY 599
            AGP++++ V +D  T    GY ++ F+   DA+ A+  +N   L G+PIR+  + +D      G  N+FI NL+  +D K LYDTFS FG I++        D   SRGFGF+ +++ EA+  AI  MNG  L +R++ V +
Sbjct:   34 AGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVAC---DEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGH 172          

HSP 2 Score: 28.4906 bits (62), Expect = 2.249e-22
Identity = 12/21 (57.14%), Postives = 16/21 (76.19%), Query Frame = 2
Query:  110 ATAYVGNLDPQVTEELLWELF 172
            A+ YVG+L P VTE +L+E F
Sbjct:   11 ASLYVGDLHPDVTEAMLYEKF 31          

HSP 3 Score: 71.633 bits (174), Expect = 4.516e-12
Identity = 48/166 (28.92%), Postives = 86/166 (51.81%), Query Frame = 3
Query:  174 QAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS-----------------QDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK 620
            Q G +++V V +D  +   + +GFV F   E+A  A+  +N  ++ G+ +   +A                  QD+     G NL++ NLD  +D+  L   FS +GVI T+ K+M +   G+S+GFGF+ + S E +  A+  MNG+ +  + + V+ A +K+ +
Sbjct:  213 QFGKMLSVKVMRDN-SGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVI-TSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEER 374          
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: HSH49_YEAST (Protein HSH49 OS=Saccharomyces cerevisiae GN=HSH49 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.211e-22
Identity = 59/187 (31.55%), Postives = 103/187 (55.08%), Query Frame = 3
Query:  138 PRLLRSYFGSCF-QAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVL-NMIKLYGKPIRVNKASQDKKSLDVGAN-----------LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGE-RHGTPAERIL 656
            PR+ +      F Q  PV+ +  PKD+V   +QGY F+EF ++ DA YAIK++ N ++LY + I+V + +    + ++ +N           LFI NL   +D   L   F+ FG ++  P+I     +       ++ ++ FE +D AI+++N Q + N +ITV YA+K++ KG  ++G   +R+L
Sbjct:   18 PRITKEQLYELFIQINPVLRIKYPKDKVLQAYQGYAFIEFYNQGDAQYAIKIMNNTVRLYDRLIKVRQVTNSTGTTNLPSNISKDMILPIAKLFIKNLADSIDSDQLVKIFNKFGKLIREPEIFY--LSNGKLKCAYVYFEDFEKADLAIKSLNNQLVANNRITVDYAFKENGKGNAKYGDDVDRLL 202          
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: PABP5_ARATH (Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5 PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 8.368e-22
Identity = 54/150 (36.00%), Postives = 91/150 (60.67%), Query Frame = 3
Query:  174 QAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKS-LDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK 620
            Q  PV N+ V +D +T+   GY +V F + EDA  A++ LN   +  +PIR+  +++D  + L    N+FI NLD  +D K LY+TFS+FG I+ + K+  D   G S+G+GF+ ++  E + AAI+ +NG  L ++Q+ V +  ++  +
Sbjct:   67 QVAPVHNLRVCRD-LTHRSLGYAYVNFANPEDASRAMESLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTIL-SCKVAMDV-VGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDR 213          

HSP 2 Score: 28.1054 bits (61), Expect = 8.368e-22
Identity = 13/37 (35.14%), Postives = 21/37 (56.76%), Query Frame = 2
Query:   62 VGANLLGQHSAERNQDATAYVGNLDPQVTEELLWELF 172
            V A      + + + +++ YVG+LDP V E  L +LF
Sbjct:   29 VAAAAAAAEALQTHPNSSLYVGDLDPSVNESHLLDLF 65          

HSP 3 Score: 75.485 bits (184), Expect = 3.127e-13
Identity = 55/156 (35.26%), Postives = 83/156 (53.21%), Query Frame = 3
Query:  180 GPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNK--ASQDKKSLDVGA-----NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGE 626
            G +++  V  D V    +GYGFV+F  EE A  AI  LN + L  K + V      QD+   + GA     N+++ NL  ++ +  L  TF  +G I ++  +M+D  +GNSR FGF+++ S EA+  A+E MNG  L    + V  A KK  + E
Sbjct:  156 GTILSCKVAMD-VVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDI-SSAVVMKD-QSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREE 308          

HSP 4 Score: 68.5514 bits (166), Expect = 3.823e-11
Identity = 55/176 (31.25%), Postives = 94/176 (53.41%), Query Frame = 3
Query:  147 LRSYFGSCFQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPI----RVNKASQDKKSLD--------------VGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK 620
            L+  FG   + G + +  V KD+  N  + +GFV F S E A  A++ +N I L G+ +    R  K S  ++ L                G+NL++ NLD  V+++ L + FS +G  VT+ K+M +   G SRGFGF++Y + E +  A++ MNG+ +  + + V+ A +K+ +
Sbjct:  241 LKKTFG---KYGDISSAVVMKDQSGN-SRSFGFVNFVSPEAAAVAVEKMNGISL-GEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGN-VTSCKVMMNSQ-GLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQRKEER 409          
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: PABP_YARLI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Yarrowia lipolytica GN=PAB1 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.072e-21
Identity = 57/139 (41.01%), Postives = 89/139 (64.03%), Query Frame = 3
Query:  180 GPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITV 593
            GPV +V V +D +T    GY +V F ++ D   A++ LN   +  +P R+  + +D      GA N++I NLDP +D K L+DTFSAFG I++  KI  D + GNSRGFGF+ Y+S E++++AI+ +NG  L ++++ V
Sbjct:   70 GPVTSVRVCRDAITRRSLGYAYVNFHNQADGIRALEELNYSPIKERPCRIMWSQRDPALRKTGAGNIYIKNLDPAIDNKALHDTFSAFGQILSC-KIATD-EFGNSRGFGFVHYESAESAESAIQHVNGMLLNDKKVFV 206          
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: PABP_PICST (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Pichia stipitis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.120e-21
Identity = 58/151 (38.41%), Postives = 91/151 (60.26%), Query Frame = 3
Query:  180 GPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITV-SYAYKKDTKGE 626
            G V ++ V +D V+    GY +V +   ED + AI+ LN   + G+P R+  + +D  +   G  N+FI NL P +D K L+DTFS FG I++  K+  D D G S+ FGF+ Y++ EA++AAIE +NG  L +R++ V  +  KKD + +
Sbjct:   76 GQVSSIRVCRDAVSKKSLGYAYVNYHKMEDGEKAIEELNYSPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSTFGKILSC-KVATD-DMGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESK 224          

HSP 2 Score: 23.8682 bits (50), Expect = 3.120e-21
Identity = 10/21 (47.62%), Postives = 14/21 (66.67%), Query Frame = 2
Query:  110 ATAYVGNLDPQVTEELLWELF 172
            A+ YVG L+  V E  L+E+F
Sbjct:   52 ASLYVGELNTSVNEATLFEIF 72          

HSP 3 Score: 83.1889 bits (204), Expect = 1.500e-15
Identity = 57/189 (30.16%), Postives = 94/189 (49.74%), Query Frame = 3
Query:  180 GPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDV-----------------GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERILAANNPSSQKSRPT 695
            G + ++Y+ KD      +G+GFV +   E A  A++ LN  ++ G+ I V +A + ++ ++                  G NLFI NLD  +D + L + F  FG I T+ ++M D +TG S+GFGF+ + S E +  AI  MN +    + + V+ A +KD    R     ++I A N    Q +  T
Sbjct:  257 GAITSIYLEKD-AEGKSKGFGFVNYEGHEAAVKAVEELNDKEINGQKIYVGRAQKKRERMEELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSEKLEEEFKPFGTI-TSARVMVD-ETGKSKGFGFVCFSSPEEATKAITEMNQRMFFGKPLYVALAQRKDV---RRSQLEQQIQARNQMRMQNAAAT 439          
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: PABP_EMENI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Emericella nidulans GN=pab1 PE=2 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 4.048e-21
Identity = 51/145 (35.17%), Postives = 85/145 (58.62%), Query Frame = 3
Query:  180 GPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 611
            G V ++ V +D VT    GY +V +      + A+  LN   + GKP R+  + +D      G  N+FI NLD  +D K L+DTF+AFG I+ + K+ +D + G S+G+GF+ Y++ EA++ AI+ +NG  L ++++ V +   K
Sbjct:   66 GQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNIL-SCKVAQD-EFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISK 208          

HSP 2 Score: 33.113 bits (74), Expect = 4.048e-21
Identity = 14/21 (66.67%), Postives = 17/21 (80.95%), Query Frame = 2
Query:  110 ATAYVGNLDPQVTEELLWELF 172
            A+ YVG LDP VTE +L+ELF
Sbjct:   42 ASLYVGELDPSVTEAMLYELF 62          

HSP 3 Score: 79.337 bits (194), Expect = 2.166e-14
Identity = 50/156 (32.05%), Postives = 91/156 (58.33%), Query Frame = 3
Query:  180 GPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPI----RVNKASQDKKSLDVGAN---LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGE 626
            G +++  V +D    + +GYGFV + + E A+ AIK +N + L  K +     ++K  +  K  ++ AN   ++I N+DP+V+++     F  FG I T+  + RD + G SRGFGF+++ + E++ AA+E MN + + ++++ V  A KK  + E
Sbjct:  154 GNILSCKVAQDEF-GVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEI-TSATLSRDSE-GKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQKKHEREE 306          
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: PABP_YEAST (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Saccharomyces cerevisiae GN=PAB1 PE=1 SV=4)

HSP 1 Score: 93.5893 bits (231), Expect = 4.066e-21
Identity = 54/140 (38.57%), Postives = 82/140 (58.57%), Query Frame = 3
Query:  180 GPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS 596
            G V ++ V +D +T    GY +V F   E    AI+ LN   + G+  R+  + +D      G+ N+FI NL PD+D K LYDTFS FG I+++ KI  D + G S+GFGF+ ++   A+  AI+A+NG  L  ++I V+
Sbjct:   62 GSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSS-KIATD-ENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVA 199          

HSP 2 Score: 28.8758 bits (63), Expect = 4.066e-21
Identity = 11/24 (45.83%), Postives = 18/24 (75.00%), Query Frame = 2
Query:  101 NQDATAYVGNLDPQVTEELLWELF 172
            N  A+ YVG+L+P V+E  L+++F
Sbjct:   35 NSSASLYVGDLEPSVSEAHLYDIF 58          

HSP 3 Score: 88.5817 bits (218), Expect = 3.075e-17
Identity = 59/186 (31.72%), Postives = 97/186 (52.15%), Query Frame = 3
Query:  180 GPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDV-----------------GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERILAANNPSSQKS 686
            GP+V+  + KD    L +G+GFV +   EDA  A++ LN  +L G+ + V +A +  + + V                 G NLF+ NLD  VD++ L + F+ +G I T+ K+MR  + G S+GFGF+ + + E +  AI   N Q +  + + V+ A +KD    R    A++I A N    Q++
Sbjct:  243 GPIVSASLEKDADGKL-KGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTI-TSAKVMRT-ENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDV---RRSQLAQQIQARNQMRYQQA 422          

HSP 4 Score: 20.7866 bits (42), Expect = 3.075e-17
Identity = 8/18 (44.44%), Postives = 12/18 (66.67%), Query Frame = 2
Query:  119 YVGNLDPQVTEELLWELF 172
            YV N++ + T+E   ELF
Sbjct:  222 YVKNINSETTDEQFQELF 239          
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: EPAB_XENTR (Embryonic polyadenylate-binding protein OS=Xenopus tropicalis GN=epabp PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.951e-21
Identity = 53/142 (37.32%), Postives = 86/142 (60.56%), Query Frame = 3
Query:  177 AGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSY 599
            AGP++++ V +D  T    GY ++ F+   DA+ A+  +N   + G+PIR+  + +D      G  N+FI NLD  +D K LYDTFSAFG I++   +    D   SRG+GF+ +++ EA++ AI+ MNG  L +R++ V +
Sbjct:   34 AGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVC---DEHGSRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGH 172          

HSP 2 Score: 85.8853 bits (211), Expect = 2.314e-16
Identity = 54/140 (38.57%), Postives = 85/140 (60.71%), Query Frame = 3
Query:  231 QGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNK-ASQDKKSLDVGA------NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK-DTKGE 626
            +GYGFV F ++E A+ AI+ +N + L  + + V    S+ ++ L+ GA      N++I N   D+D+K L + FSAFG  ++  K+M D DTG SRGFGF++Y + E +  A+  MNG+ +  R I V  A K+ + +GE
Sbjct:  138 RGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLS-VKVMMD-DTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQGE 275          

HSP 3 Score: 73.1738 bits (178), Expect = 1.552e-12
Identity = 48/164 (29.27%), Postives = 86/164 (52.44%), Query Frame = 3
Query:  180 GPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS-----------------QDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK 620
            G  ++V V  D  T   +G+GFV + + E+A  A+  +N  ++ G+ I V +A                  Q++ +   G NL++ NLD  +D+  L   FS +G I T+ K+M +   G+S+GFGF+ + S E +  A+  MNG+ +  + + V+ A +K+ +
Sbjct:  215 GNTLSVKVMMDD-TGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTI-TSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEER 374          
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: EPABB_XENLA (Embryonic polyadenylate-binding protein B OS=Xenopus laevis GN=epabp-B PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.078e-21
Identity = 53/142 (37.32%), Postives = 86/142 (60.56%), Query Frame = 3
Query:  177 AGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSY 599
            AGP++++ V +D  T    GY ++ F+   DA+ A+  +N   + G+PIR+  + +D      G  N+FI NLD  +D K LYDTFSAFG I++   +    D   SRG+GF+ +++ EA++ AI+ MNG  L +R++ V +
Sbjct:   34 AGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGDILSCKVVC---DEYGSRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGH 172          

HSP 2 Score: 81.6481 bits (200), Expect = 4.364e-15
Identity = 51/140 (36.43%), Postives = 85/140 (60.71%), Query Frame = 3
Query:  231 QGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNK-ASQDKKSLDVGA------NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK-DTKGE 626
            +GYGFV F ++E A+ AI+ +N + L  + + V    S+ ++ L+ GA      N++I N   D+D+K L + FSAFG  ++  K+M D ++G SRGFGF++Y + E +  A+  MNG+ +  R + V  A K+ + +GE
Sbjct:  138 RGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLKEIFSAFGNTLS-VKVMMD-NSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKRIERQGE 275          

HSP 3 Score: 71.633 bits (174), Expect = 4.516e-12
Identity = 46/164 (28.05%), Postives = 86/164 (52.44%), Query Frame = 3
Query:  180 GPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS-----------------QDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK 620
            G  ++V V  D  +   +G+GFV + + E+A  A+  +N  ++ G+ + V +A                  Q++ +   G NL++ NLD  +D+  L   FS +G I T+ K+M +   G+S+GFGF+ + S E +  A+  MNG+ +  + + V+ A +K+ +
Sbjct:  215 GNTLSVKVMMDN-SGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTI-TSTKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEER 374          
The following BLAST results are available for this feature:
BLAST of FC868767 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 126
Match NameE-valueIdentityDescription
PABP1_PONAB2.161e-2236.84Polyadenylate-binding protein 1 OS=Pongo abelii GN... [more]
PAP1L_HUMAN2.249e-2237.32Polyadenylate-binding protein 1-like OS=Homo sapie... [more]
HSH49_YEAST8.211e-2231.55Protein HSH49 OS=Saccharomyces cerevisiae GN=HSH49... [more]
PABP5_ARATH8.368e-2236.00Polyadenylate-binding protein 5 OS=Arabidopsis tha... [more]
PABP_YARLI1.072e-2141.01Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_PICST3.120e-2138.41Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_EMENI4.048e-2135.17Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_YEAST4.066e-2138.57Polyadenylate-binding protein, cytoplasmic and nuc... [more]
EPAB_XENTR6.951e-2137.32Embryonic polyadenylate-binding protein OS=Xenopus... [more]
EPABB_XENLA9.078e-2137.32Embryonic polyadenylate-binding protein B OS=Xenop... [more]

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Properties
Property NameValue
Genbank descriptionC31004E08EF AbioticL1 Citrus clementina cDNA clone C31004E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868767 ID=FC868767; Name=FC868767; organism=Citrus clementina; type=EST; length=704bp
GAAGTAGAAGAAGAAGAAGTAATTCCGAGTAAAAGGCATGACCACTCGAA
TCGCTCCTGGAGTTGGGGCCAATTTGCTGGGCCAACACTCCGCCGAGAGA
AATCAAGATGCCACAGCTTATGTCGGCAATCTCGATCCCCAGGTTACTGA
GGAGCTACTTTGGGAGTTGTTTTCAAGCAGGTCCTGTTGTTAATGTGTAT
GTTCCAAAAGATAGAGTGACAAACCTTCATCAAGGATACGGATTTGTAGA
GTTCCGAAGTGAGGAAGATGCTGATTATGCAATAAAGGTGCTGAATATGA
TAAAGCTTTATGGGAAGCCGATACGTGTGAATAAGGCATCCCAAGACAAA
AAGAGCTTAGATGTGGGGGCAAACCTTTTTATTGGAAACCTTGACCCAGA
TGTGGATGAGAAACTACTATATGATACATTCAGTGCGTTTGGAGTCATTG
TTACAAATCCCAAGATTATGCGAGATCCTGACACTGGAAATTCTCGTGGT
TTTGGTTTCATTAGCTATGATTCCTTTGAGGCATCCGATGCAGCTATTGA
GGCAATGAATGGCCAATACCTTTGCAACCGTCAAATTACTGTCTCATATG
CATATAAGAAAGACACTAAAGGAGAGCGCCATGGTACTCCGGCAGAGAGA
ATTTTGGCGGCAAACAATCCGAGTTCCCAGAAGAGTAGGCCCACACTTTA
TTTG
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