FC868767

Overview
NameFC868767
Unique NameFC868767
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC868767_ssr6 microsatellite FC868767_ssr6:6..17. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig4556 contig Ccv1_Contig4556:81..786. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: ELAV2_PONAB (ELAV-like protein 2 OS=Pongo abelii GN=ELAVL2 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.022e-16
Identity = 57/160 (35.62%), Postives = 87/160 (54.37%), Query Frame = 3
Query:  147 LRSYFGSCFQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQITVSYAYKKDTK 620
            L+S FGS    G + +  + +D++T    GYGFV +   +DA+ AI  LN ++L  K I+V+ A     S+   ANL++  L   + +K L   FS +G I+T+ +I+ D  TG SRG GFI +D    ++ AI+ +NGQ        ITV +A     K
Sbjct:   55 LKSLFGSI---GEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQLFSQYGRIITS-RILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQK 209          
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: ELAV2_MOUSE (ELAV-like protein 2 OS=Mus musculus GN=Elavl2 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.022e-16
Identity = 57/160 (35.62%), Postives = 87/160 (54.37%), Query Frame = 3
Query:  147 LRSYFGSCFQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQITVSYAYKKDTK 620
            L+S FGS    G + +  + +D++T    GYGFV +   +DA+ AI  LN ++L  K I+V+ A     S+   ANL++  L   + +K L   FS +G I+T+ +I+ D  TG SRG GFI +D    ++ AI+ +NGQ        ITV +A     K
Sbjct:   55 LKSLFGSI---GEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQLFSQYGRIITS-RILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQK 209          
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: ELAV2_HUMAN (ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 3.022e-16
Identity = 57/160 (35.62%), Postives = 87/160 (54.37%), Query Frame = 3
Query:  147 LRSYFGSCFQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQITVSYAYKKDTK 620
            L+S FGS    G + +  + +D++T    GYGFV +   +DA+ AI  LN ++L  K I+V+ A     S+   ANL++  L   + +K L   FS +G I+T+ +I+ D  TG SRG GFI +D    ++ AI+ +NGQ        ITV +A     K
Sbjct:   55 LKSLFGSI---GEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQLFSQYGRIITS-RILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQK 209          
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.155e-16
Identity = 56/157 (35.67%), Postives = 84/157 (53.50%), Query Frame = 3
Query:  174 QAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKK--------------SLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYA 602
            +AG V  V V  D++T   +G+GFV   S+E+ + A +  N  +L G+ +RVN     +K              S D    +++GNL   VD+  L   FS  G +V + K++ D D+G SRGFGF++Y S E  + AIE+++G  L  R I VS A
Sbjct:  109 RAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVV-DAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPA 264          
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: ELAV3_XENTR (ELAV-like protein 3 OS=Xenopus tropicalis GN=elavl3 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.793e-16
Identity = 57/160 (35.62%), Postives = 89/160 (55.62%), Query Frame = 3
Query:  150 RSYFGSCFQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGN-SRGFGFISYDSFEASDAAIEAMNGQ--YLCNRQITVSYAYKKDTK 620
            +S FGS    G + +  + +D++T    GYGFV +    DAD AI  LN +KL  K I+V+ A     S+   ANL++ +L   +++K +   FS +G I+T+ +I+ D  TG+ SRG GFI +D    ++ AI+ +NGQ     +  ITV +A     K
Sbjct:   52 KSLFGSI---GEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIR-DANLYVSSLPKTMNQKEMEQLFSQYGRIITS-RILVDQVTGSVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGASEPITVKFANNPSQK 206          
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.558e-15
Identity = 56/163 (34.36%), Postives = 84/163 (51.53%), Query Frame = 3
Query:  174 QAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKK--------------------SLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYA 602
            +AG V  V V  D++T   +G+GFV   S+E+ + A +  N  +L G+ +RVN     +K                    S D    +++GNL   VD+  L   FS  G +V + K++ D D+G SRGFGF++Y S E  + AIE+++G  L  R I VS A
Sbjct:  109 RAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVV-DAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPA 270          
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: FCA_ARATH (Flowering time control protein FCA OS=Arabidopsis thaliana GN=FCA PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.558e-15
Identity = 68/199 (34.17%), Postives = 102/199 (51.26%), Query Frame = 3
Query:  132 SIPRL-----LRSYFGSCFQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVL-NMIKLYG--KPIRVNKASQDKKSL-DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL---CNRQITVSYAYKKDTKGERHGTPAERILAANNPSSQKSRP 692
            S+PR      +R YF    Q G V+ V + KD+ T   QG  FV++ + +DAD AI+ L N I L G   P++V  A  +++ +  +   LF+G+L+    EK + + F  FG  V +  +MRD +   SRG GF+ Y S E + AAI+ +NG Y    CN+ + V +A  K  K       A  +   + P  Q S P
Sbjct:  126 SVPRTATEEEIRPYFE---QHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRALHNQITLPGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFG-HVEDVYLMRD-EYRQSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKRPKPGESREMAPPVGLGSGPRFQASGP 319          
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: TIA1_MOUSE (Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.479e-15
Identity = 50/160 (31.25%), Postives = 83/160 (51.88%), Query Frame = 3
Query:  174 QAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA---SQDKKSLDVGA-----------NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 611
            Q GP  N  +  D   N    Y FVEF     A  A+  +N  K+ GK ++VN A   S  KK                 ++F+G+L P++  + +   F+ FG I ++ ++++D  TG S+G+GF+S+ +   ++ AI+ M GQ+L  RQI  ++A +K
Sbjct:   29 QIGPCKNCKMIMDTAGN--DPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRI-SDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 185          

HSP 2 Score: 27.335 bits (59), Expect = 3.479e-15
Identity = 13/26 (50.00%), Postives = 15/26 (57.69%), Query Frame = 2
Query:   95 ERNQDATAYVGNLDPQVTEELLWELF 172
            E     T YVGNL   VTE L+ +LF
Sbjct:    2 EDEMPKTLYVGNLSRDVTEALILQLF 27          
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: TIA1_HUMAN (Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 3.479e-15
Identity = 50/160 (31.25%), Postives = 83/160 (51.88%), Query Frame = 3
Query:  174 QAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA---SQDKKSLDVGA-----------NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 611
            Q GP  N  +  D   N    Y FVEF     A  A+  +N  K+ GK ++VN A   S  KK                 ++F+G+L P++  + +   F+ FG I ++ ++++D  TG S+G+GF+S+ +   ++ AI+ M GQ+L  RQI  ++A +K
Sbjct:   29 QIGPCKNCKMIMDTAGN--DPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRI-SDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 185          

HSP 2 Score: 27.335 bits (59), Expect = 3.479e-15
Identity = 13/26 (50.00%), Postives = 15/26 (57.69%), Query Frame = 2
Query:   95 ERNQDATAYVGNLDPQVTEELLWELF 172
            E     T YVGNL   VTE L+ +LF
Sbjct:    2 EDEMPKTLYVGNLSRDVTEALILQLF 27          
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.699e-15
Identity = 50/152 (32.89%), Postives = 84/152 (55.26%), Query Frame = 3
Query:  177 AGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQ-------DKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 611
            AG V    V  +R T+  +G+GFV   + E+A+ A+++LN   + G+ + VNKA+         +   +    +++GNL  DVD   L   FS  G +V+  +++ D +TG SRGFGF++  S    + AI A++GQ L  R + V+ A ++
Sbjct:   78 AGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPRGSPERAPRGDFEPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVS-ARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAEER 228          
The following BLAST results are available for this feature:
BLAST of FC868767 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 126
Match NameE-valueIdentityDescription
ELAV2_PONAB3.022e-1635.63ELAV-like protein 2 OS=Pongo abelii GN=ELAVL2 PE=2... [more]
ELAV2_MOUSE3.022e-1635.63ELAV-like protein 2 OS=Mus musculus GN=Elavl2 PE=2... [more]
ELAV2_HUMAN3.022e-1635.63ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1... [more]
ROC1_NICSY5.155e-1635.6729 kDa ribonucleoprotein A, chloroplastic OS=Nicot... [more]
ELAV3_XENTR8.793e-1635.63ELAV-like protein 3 OS=Xenopus tropicalis GN=elavl... [more]
ROC1_NICPL2.558e-1534.3630 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
FCA_ARATH2.558e-1534.17Flowering time control protein FCA OS=Arabidopsis ... [more]
TIA1_MOUSE3.479e-1531.25Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=... [more]
TIA1_HUMAN3.479e-1531.25Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=T... [more]
ROC1_SPIOL5.699e-1532.8928 kDa ribonucleoprotein, chloroplastic OS=Spinaci... [more]

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Properties
Property NameValue
Genbank descriptionC31004E08EF AbioticL1 Citrus clementina cDNA clone C31004E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868767 ID=FC868767; Name=FC868767; organism=Citrus clementina; type=EST; length=704bp
GAAGTAGAAGAAGAAGAAGTAATTCCGAGTAAAAGGCATGACCACTCGAA
TCGCTCCTGGAGTTGGGGCCAATTTGCTGGGCCAACACTCCGCCGAGAGA
AATCAAGATGCCACAGCTTATGTCGGCAATCTCGATCCCCAGGTTACTGA
GGAGCTACTTTGGGAGTTGTTTTCAAGCAGGTCCTGTTGTTAATGTGTAT
GTTCCAAAAGATAGAGTGACAAACCTTCATCAAGGATACGGATTTGTAGA
GTTCCGAAGTGAGGAAGATGCTGATTATGCAATAAAGGTGCTGAATATGA
TAAAGCTTTATGGGAAGCCGATACGTGTGAATAAGGCATCCCAAGACAAA
AAGAGCTTAGATGTGGGGGCAAACCTTTTTATTGGAAACCTTGACCCAGA
TGTGGATGAGAAACTACTATATGATACATTCAGTGCGTTTGGAGTCATTG
TTACAAATCCCAAGATTATGCGAGATCCTGACACTGGAAATTCTCGTGGT
TTTGGTTTCATTAGCTATGATTCCTTTGAGGCATCCGATGCAGCTATTGA
GGCAATGAATGGCCAATACCTTTGCAACCGTCAAATTACTGTCTCATATG
CATATAAGAAAGACACTAAAGGAGAGCGCCATGGTACTCCGGCAGAGAGA
ATTTTGGCGGCAAACAATCCGAGTTCCCAGAAGAGTAGGCCCACACTTTA
TTTG
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