FC868767
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: ELAV2_PONAB (ELAV-like protein 2 OS=Pongo abelii GN=ELAVL2 PE=2 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 3.022e-16 Identity = 57/160 (35.62%), Postives = 87/160 (54.37%), Query Frame = 3 Query: 147 LRSYFGSCFQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQITVSYAYKKDTK 620 L+S FGS G + + + +D++T GYGFV + +DA+ AI LN ++L K I+V+ A S+ ANL++ L + +K L FS +G I+T+ +I+ D TG SRG GFI +D ++ AI+ +NGQ ITV +A K Sbjct: 55 LKSLFGSI---GEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQLFSQYGRIITS-RILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQK 209
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: ELAV2_MOUSE (ELAV-like protein 2 OS=Mus musculus GN=Elavl2 PE=2 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 3.022e-16 Identity = 57/160 (35.62%), Postives = 87/160 (54.37%), Query Frame = 3 Query: 147 LRSYFGSCFQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQITVSYAYKKDTK 620 L+S FGS G + + + +D++T GYGFV + +DA+ AI LN ++L K I+V+ A S+ ANL++ L + +K L FS +G I+T+ +I+ D TG SRG GFI +D ++ AI+ +NGQ ITV +A K Sbjct: 55 LKSLFGSI---GEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQLFSQYGRIITS-RILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQK 209
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: ELAV2_HUMAN (ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1 SV=2) HSP 1 Score: 85.5001 bits (210), Expect = 3.022e-16 Identity = 57/160 (35.62%), Postives = 87/160 (54.37%), Query Frame = 3 Query: 147 LRSYFGSCFQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQITVSYAYKKDTK 620 L+S FGS G + + + +D++T GYGFV + +DA+ AI LN ++L K I+V+ A S+ ANL++ L + +K L FS +G I+T+ +I+ D TG SRG GFI +D ++ AI+ +NGQ ITV +A K Sbjct: 55 LKSLFGSI---GEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQLFSQYGRIITS-RILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQK 209
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 5.155e-16 Identity = 56/157 (35.67%), Postives = 84/157 (53.50%), Query Frame = 3 Query: 174 QAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKK--------------SLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYA 602 +AG V V V D++T +G+GFV S+E+ + A + N +L G+ +RVN +K S D +++GNL VD+ L FS G +V + K++ D D+G SRGFGF++Y S E + AIE+++G L R I VS A Sbjct: 109 RAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVV-DAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPA 264
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: ELAV3_XENTR (ELAV-like protein 3 OS=Xenopus tropicalis GN=elavl3 PE=2 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 8.793e-16 Identity = 57/160 (35.62%), Postives = 89/160 (55.62%), Query Frame = 3 Query: 150 RSYFGSCFQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGN-SRGFGFISYDSFEASDAAIEAMNGQ--YLCNRQITVSYAYKKDTK 620 +S FGS G + + + +D++T GYGFV + DAD AI LN +KL K I+V+ A S+ ANL++ +L +++K + FS +G I+T+ +I+ D TG+ SRG GFI +D ++ AI+ +NGQ + ITV +A K Sbjct: 52 KSLFGSI---GEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIR-DANLYVSSLPKTMNQKEMEQLFSQYGRIITS-RILVDQVTGSVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGASEPITVKFANNPSQK 206
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 2.558e-15 Identity = 56/163 (34.36%), Postives = 84/163 (51.53%), Query Frame = 3 Query: 174 QAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKK--------------------SLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYA 602 +AG V V V D++T +G+GFV S+E+ + A + N +L G+ +RVN +K S D +++GNL VD+ L FS G +V + K++ D D+G SRGFGF++Y S E + AIE+++G L R I VS A Sbjct: 109 RAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVV-DAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPA 270
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: FCA_ARATH (Flowering time control protein FCA OS=Arabidopsis thaliana GN=FCA PE=2 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 2.558e-15 Identity = 68/199 (34.17%), Postives = 102/199 (51.26%), Query Frame = 3 Query: 132 SIPRL-----LRSYFGSCFQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVL-NMIKLYG--KPIRVNKASQDKKSL-DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL---CNRQITVSYAYKKDTKGERHGTPAERILAANNPSSQKSRP 692 S+PR +R YF Q G V+ V + KD+ T QG FV++ + +DAD AI+ L N I L G P++V A +++ + + LF+G+L+ EK + + F FG V + +MRD + SRG GF+ Y S E + AAI+ +NG Y CN+ + V +A K K A + + P Q S P Sbjct: 126 SVPRTATEEEIRPYFE---QHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRALHNQITLPGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFG-HVEDVYLMRD-EYRQSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKRPKPGESREMAPPVGLGSGPRFQASGP 319
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: TIA1_MOUSE (Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 3.479e-15 Identity = 50/160 (31.25%), Postives = 83/160 (51.88%), Query Frame = 3 Query: 174 QAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA---SQDKKSLDVGA-----------NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 611 Q GP N + D N Y FVEF A A+ +N K+ GK ++VN A S KK ++F+G+L P++ + + F+ FG I ++ ++++D TG S+G+GF+S+ + ++ AI+ M GQ+L RQI ++A +K Sbjct: 29 QIGPCKNCKMIMDTAGN--DPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRI-SDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 185 HSP 2 Score: 27.335 bits (59), Expect = 3.479e-15 Identity = 13/26 (50.00%), Postives = 15/26 (57.69%), Query Frame = 2 Query: 95 ERNQDATAYVGNLDPQVTEELLWELF 172 E T YVGNL VTE L+ +LF Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLF 27
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: TIA1_HUMAN (Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3) HSP 1 Score: 75.0998 bits (183), Expect = 3.479e-15 Identity = 50/160 (31.25%), Postives = 83/160 (51.88%), Query Frame = 3 Query: 174 QAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA---SQDKKSLDVGA-----------NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 611 Q GP N + D N Y FVEF A A+ +N K+ GK ++VN A S KK ++F+G+L P++ + + F+ FG I ++ ++++D TG S+G+GF+S+ + ++ AI+ M GQ+L RQI ++A +K Sbjct: 29 QIGPCKNCKMIMDTAGN--DPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRI-SDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 185 HSP 2 Score: 27.335 bits (59), Expect = 3.479e-15 Identity = 13/26 (50.00%), Postives = 15/26 (57.69%), Query Frame = 2 Query: 95 ERNQDATAYVGNLDPQVTEELLWELF 172 E T YVGNL VTE L+ +LF Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLF 27
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 5.699e-15 Identity = 50/152 (32.89%), Postives = 84/152 (55.26%), Query Frame = 3 Query: 177 AGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQ-------DKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 611 AG V V +R T+ +G+GFV + E+A+ A+++LN + G+ + VNKA+ + + +++GNL DVD L FS G +V+ +++ D +TG SRGFGF++ S + AI A++GQ L R + V+ A ++ Sbjct: 78 AGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPRGSPERAPRGDFEPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVS-ARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAEER 228 The following BLAST results are available for this feature:
BLAST of FC868767 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 126
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Sequences
The
following sequences are available for this feature:
EST sequence >FC868767 ID=FC868767; Name=FC868767; organism=Citrus clementina; type=EST; length=704bpback to top |