FC868767
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: ELAV2_XENLA (ELAV-like protein 2 OS=Xenopus laevis GN=elavl2 PE=1 SV=2) HSP 1 Score: 81.2629 bits (199), Expect = 5.699e-15 Identity = 57/161 (35.40%), Postives = 87/161 (54.04%), Query Frame = 3 Query: 147 LRSYFGSCFQAGPVVNVYVPKDRVTNLHQ-GYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQITVSYAYKKDTK 620 L+S FGS G + + + +D++T GYGFV + +DA+ AI LN ++L K I+V+ A S+ ANL++ L + +K L FS +G I+T+ +I+ D TG SRG GFI +D ++ AI+ +NGQ ITV +A K Sbjct: 82 LKSLFGSI---GEIESCKLVRDKITEGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQLFSQYGRIITS-RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQK 237
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 9.722e-15 Identity = 51/153 (33.33%), Postives = 83/153 (54.25%), Query Frame = 3 Query: 174 QAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS-------QDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 611 QAG V V +R T+ +G+GFV S ++A+ A++ N L G+ + VNKA+ + + + +++GNL DVD L FS G +V +++ D +TG SRGFGF++ + + AI A++GQ L R I V+ A ++ Sbjct: 172 QAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVV-EARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEER 323
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: HRP1_YEAST (Nuclear polyadenylated RNA-binding protein 4 OS=Saccharomyces cerevisiae GN=HRP1 PE=1 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.270e-14 Identity = 47/131 (35.88%), Postives = 72/131 (54.96%), Query Frame = 3 Query: 147 LRSYFGSCFQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASD 539 LR YFG + G V ++ + KD T +G+GF+ F D +K +++ GK I +A + D +F+G + PDV K + FS +G I+ + ++M D DTG SRGFGF++YDS +A D Sbjct: 175 LREYFG---KYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILD--GKVIDPKRAIP-RDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTII-DAQLMLDKDTGQSRGFGFVTYDSADAVD 298
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: ELAV1_XENTR (ELAV-like protein 1 OS=Xenopus tropicalis GN=elavl1 PE=2 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.270e-14 Identity = 55/154 (35.71%), Postives = 83/154 (53.90%), Query Frame = 3 Query: 147 LRSYFGSCFQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQITVSYA 602 LRS F S G V + + +D+V GYGFV + + +DA+ AI LN ++L K I+V+ A +S+ ANL+I L + +K + D F FG I+ N +++ D TG SRG FI +D ++ AI + NG + ITV +A Sbjct: 36 LRSLFSSI---GEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSVARPSSESIK-DANLYISGLPRTMTQKDVEDMFLPFGRII-NSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHKPPGSSEPITVKFA 184
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: ELAV1_HUMAN (ELAV-like protein 1 OS=Homo sapiens GN=ELAVL1 PE=1 SV=2) HSP 1 Score: 80.1073 bits (196), Expect = 1.270e-14 Identity = 55/154 (35.71%), Postives = 83/154 (53.90%), Query Frame = 3 Query: 147 LRSYFGSCFQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQITVSYA 602 LRS F S G V + + +D+V GYGFV + + +DA+ AI LN ++L K I+V+ A + + ANL+I L + +K + D FS FG I+ N +++ D TG SRG FI +D ++ AI + NG + ITV +A Sbjct: 36 LRSLFSSI---GEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIK-DANLYISGLPRTMTQKDVEDMFSRFGRII-NSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFA 184
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.302e-14 Identity = 48/153 (31.37%), Postives = 84/153 (54.90%), Query Frame = 3 Query: 174 QAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS-------QDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 611 QAG V V +R T+ +G+GFV + E+AD A+++ + L G+ + VNKA+ + ++ +++GN+ D+D+ L FS G +V + +++ D ++G SRGFGF++ S AI ++GQ L R I V+ A ++ Sbjct: 119 QAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVNKAAPRGSRPERAPRTFQPTYRIYVGNIPWDIDDARLEQVFSEHGKVV-SARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAEER 270 HSP 2 Score: 23.483 bits (49), Expect = 1.302e-14 Identity = 11/26 (42.31%), Postives = 16/26 (61.54%), Query Frame = 2 Query: 95 ERNQDATAYVGNLDPQVTEELLWELF 172 E ++DA +VGNL + E L +LF Sbjct: 92 EPSEDAKLFVGNLPYDIDSEGLAQLF 117
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.166e-14 Identity = 54/168 (32.14%), Postives = 81/168 (48.21%), Query Frame = 3 Query: 177 AGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLD--------------------------VGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYA 602 AG V V V D++T +G+GFV S + + A + N +L G+P+RVN K D G +++GNL VD+ L FS G +V +++ D D+G S+GFGF++YDS + AI++++G L RQI VS A Sbjct: 114 AGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVV-EARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEA 280
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: ELV1B_XENLA (ELAV-like protein 1-B OS=Xenopus laevis GN=elavl1-B PE=1 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 3.694e-14 Identity = 54/154 (35.06%), Postives = 83/154 (53.90%), Query Frame = 3 Query: 147 LRSYFGSCFQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQITVSYA 602 LRS F S G V + + +D+V GYGFV + + +DA+ AI LN ++L K I+V+ A +++ ANL+I L + +K + D F FG I+ N +++ D TG SRG FI +D ++ AI + NG + ITV +A Sbjct: 36 LRSLFSSI---GEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSFARPSSETIK-DANLYISGLPRTMTQKDVEDMFLPFGHII-NSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHKPPGSSEPITVKFA 184
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: PABPX_ARATH (Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis thaliana GN=At2g36660 PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 4.714e-14 Identity = 48/144 (33.33%), Postives = 77/144 (53.47%), Query Frame = 3 Query: 186 VVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRV--NKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 611 + +V + KD + YG+ F S +DA+ AI+ N L GK IRV + + D + VG N+F+ NL V +L D F FG IV+ + + G SRG+GF+ ++ +A+ AAI+ +N + +++I V KK Sbjct: 50 LTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKKNNSLLNGKMIRVMWSVRAPDARRNGVG-NVFVKNLPESVTNAVLQDMFKKFGNIVSCK--VATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKK 190 HSP 2 Score: 27.335 bits (59), Expect = 4.714e-14 Identity = 11/21 (52.38%), Postives = 16/21 (76.19%), Query Frame = 2 Query: 110 ATAYVGNLDPQVTEELLWELF 172 A+ YVG+L P VTE +L++ F Sbjct: 24 ASLYVGDLHPSVTEGILYDAF 44 HSP 3 Score: 70.8626 bits (172), Expect = 7.703e-12 Identity = 59/204 (28.92%), Postives = 98/204 (48.04%), Query Frame = 3 Query: 144 LLRSYFGSCFQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS-----------------QDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK-DTKGERHGTPAERILAANNPSSQKSRPTLY 701 LLR F + G +V++ + KD L +GY FV F + EDA A + +N K K + V +A +++K + +N+++ N++ V E+ L FS G I T+ K+M D + G S+GFGF+ + + E + A++ +GQ + + V+ A KK D K + R+ A + SS P Y Sbjct: 216 LLREKFA---EFGKIVSLAIAKDE-NRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTI-TSTKLMCD-EKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQKKEDRKMQLQVQFGNRVEARKSSSSASVNPGTY 413 HSP 4 Score: 67.781 bits (164), Expect = 6.521e-11 Identity = 47/130 (36.15%), Postives = 71/130 (54.62%), Query Frame = 3 Query: 231 QGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDK---KSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 611 +GYGFV+F E+ A AI+ LN + K I V K + K + NL++ NLD DV E LL + F+ FG IV + I +D + RG+ F+++D+ E + A E +NG ++ + V A KK Sbjct: 152 RGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIV-SLAIAKD-ENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKK 279
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: RRP2_SPIOL (30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea GN=PSRP2 PE=1 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 4.825e-14 Identity = 49/154 (31.82%), Postives = 80/154 (51.95%), Query Frame = 3 Query: 180 GPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGAN-------------LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYA 602 G + V D+ + + +GFV ++ EDA+ I+ LN ++ G+ I+VN + + +D+ ++IGNL V +LL D FS G ++ K+ R P T S GFGF+S+ S E +AAI+A+N L ++I V+ A Sbjct: 108 GAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIEKLNDTEIGGRKIKVNITEKPLEGMDIATTQAEDSQFVESPYKVYIGNLAKTVTNELLKDFFSEKGKVL-GAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQALNNSVLEGQKIRVNKA 260 The following BLAST results are available for this feature:
BLAST of FC868767 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 126
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Sequences
The
following sequences are available for this feature:
EST sequence >FC868767 ID=FC868767; Name=FC868767; organism=Citrus clementina; type=EST; length=704bpback to top |