FC868767

Overview
NameFC868767
Unique NameFC868767
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC868767_ssr6 microsatellite FC868767_ssr6:6..17. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig4556 contig Ccv1_Contig4556:81..786. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.367e-13
Identity = 47/150 (31.33%), Postives = 82/150 (54.67%), Query Frame = 3
Query:  174 QAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQ-------DKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYA 602
            QAG V    V  +R T+  +G+GFV   + E+A+ A+++ N   + G+ + VNKA++         ++ +    +++GN+   +D+  L   FS  G +V+  +++ D +TG SRGFGF++  S      AI  ++GQ L  R I V+ A
Sbjct:  158 QAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAARRGERPERPPRTFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVS-ARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVA 306          

HSP 2 Score: 21.9422 bits (45), Expect = 1.367e-13
Identity = 12/26 (46.15%), Postives = 14/26 (53.85%), Query Frame = 2
Query:   95 ERNQDATAYVGNLDPQVTEELLWELF 172
            E  +DA  +VGNL   V  E L  LF
Sbjct:  131 EPPEDAKLFVGNLPYDVDSEGLARLF 156          
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: ELAV1_MOUSE (ELAV-like protein 1 OS=Mus musculus GN=Elavl1 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.404e-13
Identity = 54/154 (35.06%), Postives = 82/154 (53.25%), Query Frame = 3
Query:  147 LRSYFGSCFQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQITVSYA 602
            LRS F S    G V +  + +D+V     GYGFV + + +DA+ AI  LN ++L  K I+V+ A    + +   ANL+I  L   + +K + D FS FG I+ N +++ D  TG SRG  FI +D    ++ AI +  G      +  ITV +A
Sbjct:   36 LRSLFSSI---GEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTLNGLRLQSKTIKVSYARPSSEVIK-DANLYISGLPRTMTQKDVEDMFSRFGRII-NSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFIGHKPPGSSEPITVKFA 184          
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.833e-13
Identity = 54/179 (30.17%), Postives = 87/179 (48.60%), Query Frame = 3
Query:  174 QAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKK---------------------------------SLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 611
            +AG V  V V  D++T   +G+GFV   ++E+ + A +  N  ++ G+ IRVN      K                                 S+D    +++GNL   VD+  L + FS  G +V + K++ D D+G SRGFGF++Y S +  + AI+++NG  L  R I VS A ++
Sbjct:  109 RAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVV-DAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAEER 286          
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: PUF60_RAT (Poly(U)-binding-splicing factor PUF60 OS=Rattus norvegicus GN=Puf60 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.127e-13
Identity = 46/146 (31.51%), Postives = 79/146 (54.11%), Query Frame = 3
Query:  180 GPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS---QDKKSLDVGA-------NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN-----GQYL 572
            GP+ ++ +  D VT  H+G+ FVE+   E A  A++ +N + L G+ I+V + S   Q +  +D  A        +++ ++  D+ +  +   F AFG I  +  + RDP TG  +G+GFI Y+  ++S  A+ +MN     GQYL
Sbjct:  158 GPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKI-KSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYL 302          
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: PUF60_PONAB (Poly(U)-binding-splicing factor PUF60 OS=Pongo abelii GN=PUF60 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.127e-13
Identity = 46/146 (31.51%), Postives = 79/146 (54.11%), Query Frame = 3
Query:  180 GPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS---QDKKSLDVGA-------NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN-----GQYL 572
            GP+ ++ +  D VT  H+G+ FVE+   E A  A++ +N + L G+ I+V + S   Q +  +D  A        +++ ++  D+ +  +   F AFG I  +  + RDP TG  +G+GFI Y+  ++S  A+ +MN     GQYL
Sbjct:  152 GPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKI-KSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYL 296          
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: PUF60_MOUSE (Poly(U)-binding-splicing factor PUF60 OS=Mus musculus GN=Puf60 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.127e-13
Identity = 46/146 (31.51%), Postives = 79/146 (54.11%), Query Frame = 3
Query:  180 GPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS---QDKKSLDVGA-------NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN-----GQYL 572
            GP+ ++ +  D VT  H+G+ FVE+   E A  A++ +N + L G+ I+V + S   Q +  +D  A        +++ ++  D+ +  +   F AFG I  +  + RDP TG  +G+GFI Y+  ++S  A+ +MN     GQYL
Sbjct:  158 GPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKI-KSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYL 302          
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: PUF60_HUMAN (Poly(U)-binding-splicing factor PUF60 OS=Homo sapiens GN=PUF60 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.127e-13
Identity = 46/146 (31.51%), Postives = 79/146 (54.11%), Query Frame = 3
Query:  180 GPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS---QDKKSLDVGA-------NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN-----GQYL 572
            GP+ ++ +  D VT  H+G+ FVE+   E A  A++ +N + L G+ I+V + S   Q +  +D  A        +++ ++  D+ +  +   F AFG I  +  + RDP TG  +G+GFI Y+  ++S  A+ +MN     GQYL
Sbjct:  153 GPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKI-KSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYL 297          
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: PUF60_BOVIN (Poly(U)-binding-splicing factor PUF60 OS=Bos taurus GN=PUF60 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.127e-13
Identity = 46/146 (31.51%), Postives = 79/146 (54.11%), Query Frame = 3
Query:  180 GPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS---QDKKSLDVGA-------NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN-----GQYL 572
            GP+ ++ +  D VT  H+G+ FVE+   E A  A++ +N + L G+ I+V + S   Q +  +D  A        +++ ++  D+ +  +   F AFG I  +  + RDP TG  +G+GFI Y+  ++S  A+ +MN     GQYL
Sbjct:  124 GPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKI-KSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYL 268          
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: ELAV4_XENTR (ELAV-like protein 4 OS=Xenopus tropicalis GN=elavl4 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.085e-13
Identity = 49/131 (37.40%), Postives = 72/131 (54.96%), Query Frame = 3
Query:  234 GYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCN--RQITVSYAYKKDTK 620
            GYGFV +   +DA+ AI  LN ++L  K I+V+ A     S+   ANL++  L   + +K L   FS +G I+T+ +I+ D  TG SRG GFI +D    ++ AI+ +NGQ        ITV +A     K
Sbjct:  122 GYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQLFSQYGRIITS-RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAAEPITVKFANNPSQK 250          
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: ELAV4_XENLA (ELAV-like protein 4 OS=Xenopus laevis GN=elavl4 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.085e-13
Identity = 49/131 (37.40%), Postives = 72/131 (54.96%), Query Frame = 3
Query:  234 GYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCN--RQITVSYAYKKDTK 620
            GYGFV +   +DA+ AI  LN ++L  K I+V+ A     S+   ANL++  L   + +K L   FS +G I+T+ +I+ D  TG SRG GFI +D    ++ AI+ +NGQ        ITV +A     K
Sbjct:  122 GYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQLFSQYGRIITS-RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAAEPITVKFANNPSQK 250          
The following BLAST results are available for this feature:
BLAST of FC868767 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 126
Match NameE-valueIdentityDescription
ROC4_NICSY1.367e-1331.3331 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ELAV1_MOUSE1.404e-1335.06ELAV-like protein 1 OS=Mus musculus GN=Elavl1 PE=1... [more]
ROC2_NICSY1.833e-1330.1729 kDa ribonucleoprotein B, chloroplastic OS=Nicot... [more]
PUF60_RAT3.127e-1331.51Poly(U)-binding-splicing factor PUF60 OS=Rattus no... [more]
PUF60_PONAB3.127e-1331.51Poly(U)-binding-splicing factor PUF60 OS=Pongo abe... [more]
PUF60_MOUSE3.127e-1331.51Poly(U)-binding-splicing factor PUF60 OS=Mus muscu... [more]
PUF60_HUMAN3.127e-1331.51Poly(U)-binding-splicing factor PUF60 OS=Homo sapi... [more]
PUF60_BOVIN3.127e-1331.51Poly(U)-binding-splicing factor PUF60 OS=Bos tauru... [more]
ELAV4_XENTR4.085e-1337.40ELAV-like protein 4 OS=Xenopus tropicalis GN=elavl... [more]
ELAV4_XENLA4.085e-1337.40ELAV-like protein 4 OS=Xenopus laevis GN=elavl4 PE... [more]

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Properties
Property NameValue
Genbank descriptionC31004E08EF AbioticL1 Citrus clementina cDNA clone C31004E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868767 ID=FC868767; Name=FC868767; organism=Citrus clementina; type=EST; length=704bp
GAAGTAGAAGAAGAAGAAGTAATTCCGAGTAAAAGGCATGACCACTCGAA
TCGCTCCTGGAGTTGGGGCCAATTTGCTGGGCCAACACTCCGCCGAGAGA
AATCAAGATGCCACAGCTTATGTCGGCAATCTCGATCCCCAGGTTACTGA
GGAGCTACTTTGGGAGTTGTTTTCAAGCAGGTCCTGTTGTTAATGTGTAT
GTTCCAAAAGATAGAGTGACAAACCTTCATCAAGGATACGGATTTGTAGA
GTTCCGAAGTGAGGAAGATGCTGATTATGCAATAAAGGTGCTGAATATGA
TAAAGCTTTATGGGAAGCCGATACGTGTGAATAAGGCATCCCAAGACAAA
AAGAGCTTAGATGTGGGGGCAAACCTTTTTATTGGAAACCTTGACCCAGA
TGTGGATGAGAAACTACTATATGATACATTCAGTGCGTTTGGAGTCATTG
TTACAAATCCCAAGATTATGCGAGATCCTGACACTGGAAATTCTCGTGGT
TTTGGTTTCATTAGCTATGATTCCTTTGAGGCATCCGATGCAGCTATTGA
GGCAATGAATGGCCAATACCTTTGCAACCGTCAAATTACTGTCTCATATG
CATATAAGAAAGACACTAAAGGAGAGCGCCATGGTACTCCGGCAGAGAGA
ATTTTGGCGGCAAACAATCCGAGTTCCCAGAAGAGTAGGCCCACACTTTA
TTTG
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