FC868775

Overview
NameFC868775
Unique NameFC868775
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7564 contig Ccv1_Contig7564:1..678. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868775 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.174e-25
Identity = 54/57 (94.74%), Postives = 56/57 (98.25%), Query Frame = 2
Query:  518 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAF 688
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAF
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAF 208          
BLAST of FC868775 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.174e-25
Identity = 54/57 (94.74%), Postives = 56/57 (98.25%), Query Frame = 2
Query:  518 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAF 688
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAF
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAF 208          
BLAST of FC868775 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.174e-25
Identity = 54/57 (94.74%), Postives = 56/57 (98.25%), Query Frame = 2
Query:  518 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAF 688
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAF
Sbjct:    1 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAF 57          
BLAST of FC868775 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.174e-25
Identity = 54/57 (94.74%), Postives = 56/57 (98.25%), Query Frame = 2
Query:  518 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAF 688
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAF
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAF 206          
BLAST of FC868775 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.174e-25
Identity = 54/57 (94.74%), Postives = 56/57 (98.25%), Query Frame = 2
Query:  518 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAF 688
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAF
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAF 206          
BLAST of FC868775 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.874e-23
Identity = 53/65 (81.54%), Postives = 56/65 (86.15%), Query Frame = 2
Query:  497 LDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG-GPLGEVTDPLYPGGSFDPLGLADDPEAF 688
            LDYLGNPSL+HAQSILAIWA QV+LMGAVEGYR+AG GPLGE  D LYPGGSFDPL    DPEAF
Sbjct:    1 LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDPEAF 65          
BLAST of FC868775 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.280e-18
Identity = 58/154 (37.66%), Postives = 79/154 (51.30%), Query Frame = 2
Query:  224 PDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA-----CQVVLMGAVEGYRIAGGPLGEVTDPLYPGGS-FDPLG 664
            PDR  +   F G  PP +L G  PGD+G+D  GL++DPE+   N++ E++HCRWAMLGA G   PELL + G+      W+ AG Q +      +    +L   + +L  WA       ++  G V    I        TD  YPGG  FDPLG
Sbjct:   63 PDRPLW---FPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQEY------FTDTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLG 206          
BLAST of FC868775 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.006e-18
Identity = 66/195 (33.85%), Postives = 89/195 (45.64%), Query Frame = 2
Query:  110 VGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGA-QIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAF 688
            VG    LAPS     +G       T S  V+  + W           F G+P P++L G  PGD+G+D  GL+  PE F + +E E+ HCRWAML   G + PE L       G   W KA       +G   YLGNP  +   ++  I A + + +   E  R       +     YPGG+FDPLG + DP  F
Sbjct:   13 VGVPSLLAPSSRSGRSGLPFCAYATTSGRVTMSAEW-----------FPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYLGNP--VPWGNLPTILAIEFLAIAFAEQQRTME---KDPEKKKYPGGAFDPLGFSKDPAKF 184          
BLAST of FC868775 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.536e-17
Identity = 61/167 (36.53%), Postives = 82/167 (49.10%), Query Frame = 2
Query:  185 GSKSVSSGSPWYGPDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA-----CQVVLMGAVEGYRIAGGPLGEVTDPLYPGGS-FDPLG 664
            GS+SV+  +    PDR  +   F G  PP +L G  PGD+G+D  GL +DPE+   N + E++H RWAMLGA G   PE L + GV      W+ AG Q +      +    +L   + +L  WA       ++  G V    I        TD  YPGG  FDPLG
Sbjct:   50 GSRSVAVSAVAADPDRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV-LNTPSWYTAGEQEY------FTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLG 206          
BLAST of FC868775 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.218e-16
Identity = 56/146 (38.36%), Postives = 73/146 (50.00%), Query Frame = 2
Query:  257 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAF 688
            G+P PSYL G  PGD+G+D+ GL   P    + +E E+IHCRWAML   G + PE L       G   W KA       GG   YLG P  +   ++  I A + + +  VE  R       +     YPGG+FDPLG + DP  F
Sbjct:   52 GQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEAL-------GLGNWVKAQEWAAIPGGQATYLGQP--VPWGTLPTILAIEFLAIAFVEHQR---SMEKDSEKKKYPGGAFDPLGYSKDPAKF 185          
The following BLAST results are available for this feature:
BLAST of FC868775 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
CB2F_SOLLC1.174e-2594.74Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC1.174e-2594.74Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB2D_SOLLC1.174e-2594.74Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC1.174e-2594.74Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SOLLC1.174e-2594.74Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB21_RAPSA1.874e-2381.54Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB12_SOLLC5.280e-1837.66Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB121_HORVU9.006e-1833.85Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB12_PETHY1.536e-1736.53Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB11_SOLLC2.218e-1638.36Chlorophyll a-b binding protein 6A, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionC31004F06EF AbioticL1 Citrus clementina cDNA clone C31004F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868775 ID=FC868775; Name=FC868775; organism=Citrus clementina; type=EST; length=689bp
GACACCAGCAGCTTCTCTTGCTTACACAGCTTCTCTTGCTTGCACAGCTT
CTGCTTCTCAATTAAATTCCGCAATGGCAACCTCAACAATGGCTCTCTCC
TCATCATTCGTCGGCAAGGCTGTGAACCTCGCCCCTTCAGGCAATGAGCT
GAGCAATGGTGGCCGCATCTCCATGCGTAAAACCGGGAGCAAGTCTGTTT
CTTCAGGCAGCCCGTGGTACGGCCCGGACAGAGTCAAGTACTTGGGCCCA
TTCTCTGGCGAGCCCCCAAGCTACTTGACCGGTGAGTTCCCTGGCGACTA
CGGTTGGGACACAGCCGGGCTTTCAGCTGACCCAGAAACCTTTGCCAAGA
ACCGTGAACTCGAAGTCATCCACTGCAGATGGGCCATGTTGGGAGCTCTT
GGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACGGAGTCAAGTTCGGTGA
GGCCGTGTGGTTCAAGGCGGGAGCTCAGATCTTCAGCGAGGGCGGGCTTG
ACTACTTGGGAAACCCAAGCTTGATCCACGCCCAGAGCATCTTGGCCATC
TGGGCTTGCCAGGTGGTCTTGATGGGAGCCGTTGAGGGTTACAGAATTGC
TGGAGGGCCGCTCGGTGAAGTGACCGACCCATTGTACCCAGGTGGCAGCT
TTGATCCATTGGGTTTGGCTGATGACCCGGAAGCTTTTG
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