FC868781

Overview
NameFC868781
Unique NameFC868781
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length749
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9397 contig Ccv1_Contig9397:1..750. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868781 vs. ExPASy Swiss-Prot
Match: PORA_WHEAT (Protochlorophyllide reductase A, chloroplastic OS=Triticum aestivum GN=PORA PE=3 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 1.178e-61
Identity = 127/213 (59.62%), Postives = 155/213 (72.77%), Query Frame = 3
Query:   99 VPSAFSVPKEGKT--SASFKDSSLF-GVSFSEHAKADFSSSALRCKREFSQRNGVVRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFXXXXXXXXXXKQSDYPS 728
            +PS  SVPK+G +  +A+ KD++ F GVS    +KA  +S A+R +        V  A +  T SP    + P GKKTLR+G V+ITGASSGLGLA AKALAETGKWH++MACRDFLKA +AAK+AGMA  +YT+MHLDLASLDSVRQFVD FRR+  PLDVLVCNAA+Y PTA+ PTFTA+G E+SVG NHLGHF          ++SDYPS
Sbjct:    6 LPSTLSVPKKGSSMGAAAVKDTAAFLGVS----SKAKKASLAVRTQ--------VATAPSSVTTSPGSATAKPSGKKTLRQGVVVITGASSGLGLAAAKALAETGKWHVVMACRDFLKASKAAKAAGMADGSYTVMHLDLASLDSVRQFVDAFRRAEMPLDVLVCNAAIYRPTARTPTFTADGHEMSVGVNHLGHFLLARLLMEDLQKSDYPS 206          
BLAST of FC868781 vs. ExPASy Swiss-Prot
Match: POR_MARPA (Protochlorophyllide reductase, chloroplastic OS=Marchantia paleacea GN=PORA PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.908e-52
Identity = 107/179 (59.78%), Postives = 129/179 (72.07%), Query Frame = 3
Query:  150 KDSSLFGVSFSEHAKADFSSSALRCKR---EFSQRNGVVRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHF 677
            K+S+  G+   E AK  F  + L           + GV+     A  +PA  ++ P  KKT  K + IITGASSGLGLATAKALA+TG+WH+IMACRDFLKAERAA+S G+ K++YT++H DLAS DSVR FVD FRR+ R LDVLVCNAAVY PT KEP F+AEGFELSVGTNH+GHF
Sbjct:   86 KESAFLGLRMGEVAK--FGGALLSVSTVAANLKSKPGVLSVN--AVTAPAETMNKPSSKKTATKSTCIITGASSGLGLATAKALADTGEWHVIMACRDFLKAERAARSVGIPKDSYTVIHCDLASFDSVRAFVDNFRRTERQLDVLVCNAAVYFPTDKEPKFSAEGFELSVGTNHMGHF 260          
BLAST of FC868781 vs. ExPASy Swiss-Prot
Match: POR_AVESA (Protochlorophyllide reductase (Fragment) OS=Avena sativa PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 7.162e-51
Identity = 96/130 (73.85%), Postives = 110/130 (84.62%), Query Frame = 3
Query:  339 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFXXXXXXXXXXKQSDYPS 728
            V+ITGASSGLGLA AKALAETGKWH++MACRDFLKA +AAK+AGMA  +YT+MHLDLASLDSVRQFVD FRR+  PLDVLVCNAA+Y PTA++PTFTAEG E+SVG NHLGHF          ++SDYPS
Sbjct:    2 VVITGASSGLGLAAAKALAETGKWHVVMACRDFLKASKAAKAAGMADGSYTVMHLDLASLDSVRQFVDAFRRAEMPLDVLVCNAAIYRPTARKPTFTAEGVEMSVGVNHLGHFLLARLLLEDLQKSDYPS 131          
BLAST of FC868781 vs. ExPASy Swiss-Prot
Match: POR_CHLRE (Protochlorophyllide reductase, chloroplastic OS=Chlamydomonas reinhardtii GN=PORA PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.678e-47
Identity = 106/196 (54.08%), Postives = 131/196 (66.84%), Query Frame = 3
Query:  105 SAFSVPKEGKTSASFKDSSLFGVSFSEHAKADFSSSALRCKREFSQRNGVVRAQTMATASPAV-DVSSPQG----KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHF 677
            SA SV    + S+  + +    VS    ++    + AL  +   ++   VV A T    SP++ D   P        T +K + IITGASSGLGL  AKALA TG+WH++MACRDFLKAE+AAK  GM   +Y+I+HLDL+SL+SVRQFV  F+ SGR LD LVCNAAVYLPTAKEP FTA+GFELSVGTNHLGHF
Sbjct:    6 SAKSVSARAQVSSKAQAAPAVAVSGRTSSRV-MPAPALAARSSVARTPLVVCAATATAPSPSLADKFKPNAIARVPATQQKQTAIITGASSGLGLNAAKALAATGEWHVVMACRDFLKAEQAAKKVGMPAGSYSILHLDLSSLESVRQFVQNFKASGRRLDALVCNAAVYLPTAKEPRFTADGFELSVGTNHLGHF 200          
BLAST of FC868781 vs. ExPASy Swiss-Prot
Match: POR_PLEBO (Light-dependent protochlorophyllide reductase OS=Plectonema boryanum GN=por PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.713e-36
Identity = 73/117 (62.39%), Postives = 93/117 (79.49%), Query Frame = 3
Query:  327 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHF 677
            +K +V+ITGASSG+GL  AKAL + G WH++MACR+  KA+ AAKS GM+ ++YT+MH+DL SLDSVR+FV  FR SG+ LD LVCNAAV++P  KEP  + EG+ELSV TNH GHF
Sbjct:    5 QKPTVVITGASSGVGLYAAKALVKRG-WHVVMACRNLEKADSAAKSLGMSPDSYTLMHIDLGSLDSVRKFVTQFRESGKSLDALVCNAAVHMPLLKEPMRSPEGYELSVATNHFGHF 120          
BLAST of FC868781 vs. ExPASy Swiss-Prot
Match: POR_SYNY3 (Light-dependent protochlorophyllide reductase OS=Synechocystis sp. (strain PCC 6803) GN=por PE=3 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 2.559e-32
Identity = 70/116 (60.34%), Postives = 85/116 (73.28%), Query Frame = 3
Query:  330 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHF 677
            K +VIITGASSG+GL  AKAL + G WH+IMACR+  K ++ A   G  K++YTI+ LDL  LDSVR+FV  FR  GRPL  LVCNAAVY P   EP ++A+ +ELSV TNHLGHF
Sbjct:    6 KPTVIITGASSGVGLYGAKALIDKG-WHVIMACRNLDKTQKVADELGFPKDSYTIIKLDLGYLDSVRRFVAQFRELGRPLKALVCNAAVYFPLLDEPLWSADDYELSVATNHLGHF 120          
BLAST of FC868781 vs. ExPASy Swiss-Prot
Match: WWOX_DANRE (WW domain-containing oxidoreductase OS=Danio rerio GN=wwox PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.507e-16
Identity = 51/115 (44.35%), Postives = 72/115 (62.61%), Query Frame = 3
Query:  339 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAK--SAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHF 677
            +I+TGA+SG+G  TA++ A  G  H+I+ACR+  +A +AA       +K    ++ LDLASL SVRQF + F+ +  PL VLVCNAAV    ++    T +GFE +    HLGHF
Sbjct:  124 IIVTGANSGIGFETARSFALHGA-HVILACRNQSRASKAASLIMGEWSKARVEVLPLDLASLRSVRQFAELFKATKLPLHVLVCNAAV---CSQPWRLTEDGFESTFQICHLGHF 234          
BLAST of FC868781 vs. ExPASy Swiss-Prot
Match: RDH13_HUMAN (Retinol dehydrogenase 13 OS=Homo sapiens GN=RDH13 PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 7.480e-16
Identity = 54/124 (43.55%), Postives = 72/124 (58.06%), Query Frame = 3
Query:  315 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTI--MHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAE-GFELSVGTNHLGHF 677
            K T+   +VI+TGA++G+G  TA  LA  G  +II+ACRD  K E AAK       N+ +   HLDLASL S+R+F          +D+L+ NA V     + P +T E GFE+  G NHLGHF
Sbjct:   33 KATIPGKTVIVTGANTGIGKQTALELARRGG-NIILACRDMEKCEAAAKDIRGETLNHHVNARHLDLASLKSIREFAAKIIEEEERVDILINNAGV----MRCPHWTTEDGFEMQFGVNHLGHF 151          
BLAST of FC868781 vs. ExPASy Swiss-Prot
Match: WWOX_HUMAN (WW domain-containing oxidoreductase OS=Homo sapiens GN=WWOX PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.842e-15
Identity = 49/115 (42.61%), Postives = 65/115 (56.52%), Query Frame = 3
Query:  339 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA--GMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHF 677
            V++TGA+SG+G  TAK+ A  G  H+I+ACR+  +A  A         K     M LDLA L SV+ F + F+    PL VLVCNAA +   A   + T +G E +   NHLGHF
Sbjct:  127 VVVTGANSGIGFETAKSFALHGA-HVILACRNMARASEAVSRILEEWHKAKVEAMTLDLALLRSVQHFAEAFKAKNVPLHVLVCNAATF---ALPWSLTKDGLETTFQVNHLGHF 237          
BLAST of FC868781 vs. ExPASy Swiss-Prot
Match: RDH11_HUMAN (Retinol dehydrogenase 11 OS=Homo sapiens GN=RDH11 PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 6.332e-15
Identity = 55/154 (35.71%), Postives = 79/154 (51.30%), Query Frame = 3
Query:  297 VSSPQGKKTLRKGS-----------VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIM--HLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYL-PTAKEPTFTAEGFELSVGTNHLGHFXXXXXXXXXXKQS 716
            +++PQ +K L  G            V++TGA++G+G  TAK LA+ G   + +ACRD  K E  AK       N  ++   LDL+   S+R F   F    + L VL+ NA V + P +K    TA+GFE+ +G NHLGHF          K+S
Sbjct:   19 MAAPQIRKMLSSGVCTSTVQLPGKVVVVTGANTGIGKETAKELAQRGA-RVYLACRDVEKGELVAKEIQTTTGNQQVLVRKLDLSDTKSIRAFAKGFLAEEKHLHVLINNAGVMMCPYSK----TADGFEMHIGVNHLGHFLLTHLLLEKLKES 167          
The following BLAST results are available for this feature:
BLAST of FC868781 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
PORA_WHEAT1.178e-6159.62Protochlorophyllide reductase A, chloroplastic OS=... [more]
POR_MARPA2.908e-5259.78Protochlorophyllide reductase, chloroplastic OS=Ma... [more]
POR_AVESA7.162e-5173.85Protochlorophyllide reductase (Fragment) OS=Avena ... [more]
POR_CHLRE3.678e-4754.08Protochlorophyllide reductase, chloroplastic OS=Ch... [more]
POR_PLEBO1.713e-3662.39Light-dependent protochlorophyllide reductase OS=P... [more]
POR_SYNY32.559e-3260.34Light-dependent protochlorophyllide reductase OS=S... [more]
WWOX_DANRE1.507e-1644.35WW domain-containing oxidoreductase OS=Danio rerio... [more]
RDH13_HUMAN7.480e-1643.55Retinol dehydrogenase 13 OS=Homo sapiens GN=RDH13 ... [more]
WWOX_HUMAN2.842e-1542.61WW domain-containing oxidoreductase OS=Homo sapien... [more]
RDH11_HUMAN6.332e-1535.71Retinol dehydrogenase 11 OS=Homo sapiens GN=RDH11 ... [more]

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Properties
Property NameValue
Genbank descriptionC31004F12EF AbioticL1 Citrus clementina cDNA clone C31004F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868781 ID=FC868781; Name=FC868781; organism=Citrus clementina; type=EST; length=749bp
TCGCCGGGGATTCTCTCAACATTGGTCAGAACAAAAAATCCTTTAGAAAG
AAAGTCTCAACACTAAGCTAGTTAATGGCCCTCCAAGCTGCTGCTTTGGT
TCCCTCTGCTTTCTCAGTCCCCAAAGAGGGTAAAACTAGTGCATCTTTCA
AGGACTCAAGTCTTTTTGGAGTTTCATTCTCAGAACATGCAAAGGCTGAT
TTCAGCTCTTCTGCATTAAGATGCAAGAGAGAATTCAGCCAAAGAAATGG
GGTGGTAAGAGCCCAAACGATGGCTACTGCCTCTCCAGCAGTCGATGTTT
CTTCCCCACAAGGGAAGAAAACTCTCAGAAAAGGCAGCGTTATAATCACC
GGCGCATCGTCTGGATTGGGGCTGGCCACAGCTAAGGCTTTAGCTGAAAC
TGGGAAATGGCATATAATCATGGCCTGCAGGGATTTTCTCAAGGCTGAAA
GAGCCGCCAAGTCGGCTGGCATGGCCAAGGAGAACTACACTATCATGCAT
TTAGATCTGGCTTCCCTTGACAGTGTTCGCCAATTTGTTGATACCTTCAG
GCGATCAGGCAGACCTCTCGATGTGCTAGTTTGCAATGCTGCTGTTTATT
TGCCAACTGCTAAGGAGCCTACATTTACGGCCGAGGGATTTGAACTTAGT
GTTGGAACCAACCATCTTGGTCACTTCCTCCTTTCNACGCTGTTGCTTGA
TGACTTGAAGCAATCTGATTACCCATCAAGCGTCTCATCATCGTTGGCT
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