FC868781

Overview
NameFC868781
Unique NameFC868781
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length749
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9397 contig Ccv1_Contig9397:1..750. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868781 vs. ExPASy Swiss-Prot
Match: DHRSX_HUMAN (Dehydrogenase/reductase SDR family member on chromosome X OS=Homo sapiens GN=DHRSX PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.320e-12
Identity = 47/130 (36.15%), Postives = 69/130 (53.08%), Query Frame = 3
Query:  342 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTI--MHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFXXXXXXXXXXKQSDYP 725
            I+TG + G+G +TAK LA  G  H+I+A  +  KA++          N  +  ++ DLAS+ S+RQFV  F+    PL VL+ NA V +   ++   T +GFE   G N+LGHF          K+S  P
Sbjct:   47 IVTGGTDGIGYSTAKHLARLGM-HVIIAGNNDSKAKQVVSKIKEETLNDKVEFLYCDLASMTSIRQFVQKFKMKKIPLHVLINNAGVMMVPQRK---TRDGFEEHFGLNYLGHFLLTNLLLDTLKESGSP 172          
BLAST of FC868781 vs. ExPASy Swiss-Prot
Match: DHRSX_MOUSE (Dehydrogenase/reductase SDR family member on chromosome X homolog OS=Mus musculus GN=Dhrsx PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.842e-12
Identity = 47/114 (41.23%), Postives = 64/114 (56.14%), Query Frame = 3
Query:  342 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS--AGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHF 677
            I+TGA++G+G +TA+ LA  G   +++A  D  + +    S  A M  +    + LDLASL SVR F   F+  G PL +LV NA V L    E   T +GFE  +G N LGHF
Sbjct:   47 IVTGATAGIGRSTARQLARLGMC-VVVAGNDEHRGQEVVSSIRAEMGSDRAHFLPLDLASLASVRGFARDFQALGLPLHLLVNNAGVMLEPRAE---TEDGFERHLGVNFLGHF 156          
BLAST of FC868781 vs. ExPASy Swiss-Prot
Match: WWOX_DROME (WW domain-containing oxidoreductase OS=Drosophila melanogaster GN=Wwox PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.460e-11
Identity = 47/124 (37.90%), Postives = 68/124 (54.84%), Query Frame = 3
Query:  318 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAE----RAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHF 677
            K L   + +ITGA+ G+G  TA++LA  G   II ACR+   AE    R A+    A+       LDL+SL SV++FV+  ++S   +D L+ NA V+   A   T T +G E +   +HL HF
Sbjct:  117 KDLHGRTALITGANCGIGYETARSLAHHG-CEIIFACRNRSSAEAAIERIAQERPAARSRCRFAALDLSSLRSVQRFVEEIKQSVSHIDYLILNAGVF---ALPYTRTVDGLETTFQVSHLSHF 236          
BLAST of FC868781 vs. ExPASy Swiss-Prot
Match: DHR13_HUMAN (Dehydrogenase/reductase SDR family member 13 OS=Homo sapiens GN=DHRS13 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.462e-11
Identity = 47/124 (37.90%), Postives = 62/124 (50.00%), Query Frame = 3
Query:  312 GKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTI--MHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHF 677
            G   LR  + ++TGA+SG+G  TA  LA  G   +++ACR   + E AA        N  +  M LDLASL SVR F   F  S   LD+L+ NA +          T E F L +  NH+G F
Sbjct:   30 GMGNLRGRTAVVTGANSGIGKMTALELARRGA-RVVLACRSQERGEAAAFDLRQESGNNEVIFMALDLASLASVRAFATAFLSSEPRLDILIHNAGI-----SSCGRTREAFNLLLRVNHIGPF 147          
BLAST of FC868781 vs. ExPASy Swiss-Prot
Match: DHR13_BOVIN (Dehydrogenase/reductase SDR family member 13 OS=Bos taurus GN=DHRS13 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.462e-11
Identity = 47/125 (37.60%), Postives = 64/125 (51.20%), Query Frame = 3
Query:  309 QGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTI--MHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHF 677
            +G  +LR  + ++TGA+SG+G  TA  LA  G   +++ACR   + E AA        N  +  M LDLASL SVR F   F  S   LD+L+ NA +          T E F L +  NH+G F
Sbjct:   29 RGLASLRGRTAVVTGANSGIGKMTALELARRGA-RVVLACRSRERGEAAAFDLRQESGNNEVIFMALDLASLASVRAFATAFLSSEPRLDILIHNAGI-----SSCGRTREPFNLLLRVNHIGPF 147          
The following BLAST results are available for this feature:
BLAST of FC868781 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
DHRSX_HUMAN1.320e-1236.15Dehydrogenase/reductase SDR family member on chrom... [more]
DHRSX_MOUSE3.842e-1241.23Dehydrogenase/reductase SDR family member on chrom... [more]
WWOX_DROME1.460e-1137.90WW domain-containing oxidoreductase OS=Drosophila ... [more]
DHR13_HUMAN9.462e-1137.90Dehydrogenase/reductase SDR family member 13 OS=Ho... [more]
DHR13_BOVIN9.462e-1137.60Dehydrogenase/reductase SDR family member 13 OS=Bo... [more]

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Properties
Property NameValue
Genbank descriptionC31004F12EF AbioticL1 Citrus clementina cDNA clone C31004F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868781 ID=FC868781; Name=FC868781; organism=Citrus clementina; type=EST; length=749bp
TCGCCGGGGATTCTCTCAACATTGGTCAGAACAAAAAATCCTTTAGAAAG
AAAGTCTCAACACTAAGCTAGTTAATGGCCCTCCAAGCTGCTGCTTTGGT
TCCCTCTGCTTTCTCAGTCCCCAAAGAGGGTAAAACTAGTGCATCTTTCA
AGGACTCAAGTCTTTTTGGAGTTTCATTCTCAGAACATGCAAAGGCTGAT
TTCAGCTCTTCTGCATTAAGATGCAAGAGAGAATTCAGCCAAAGAAATGG
GGTGGTAAGAGCCCAAACGATGGCTACTGCCTCTCCAGCAGTCGATGTTT
CTTCCCCACAAGGGAAGAAAACTCTCAGAAAAGGCAGCGTTATAATCACC
GGCGCATCGTCTGGATTGGGGCTGGCCACAGCTAAGGCTTTAGCTGAAAC
TGGGAAATGGCATATAATCATGGCCTGCAGGGATTTTCTCAAGGCTGAAA
GAGCCGCCAAGTCGGCTGGCATGGCCAAGGAGAACTACACTATCATGCAT
TTAGATCTGGCTTCCCTTGACAGTGTTCGCCAATTTGTTGATACCTTCAG
GCGATCAGGCAGACCTCTCGATGTGCTAGTTTGCAATGCTGCTGTTTATT
TGCCAACTGCTAAGGAGCCTACATTTACGGCCGAGGGATTTGAACTTAGT
GTTGGAACCAACCATCTTGGTCACTTCCTCCTTTCNACGCTGTTGCTTGA
TGACTTGAAGCAATCTGATTACCCATCAAGCGTCTCATCATCGTTGGCT
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