FC868797

Overview
NameFC868797
Unique NameFC868797
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_BIFAA (Serine hydroxymethyltransferase OS=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083) GN=glyA PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.961e-33
Identity = 76/160 (47.50%), Postives = 101/160 (63.12%), Query Frame = 1
Query:  208 NAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYID 687
            NAP+   DPEIA+I++ E +RQ  GLE+I SENF   +V+QA GSV+TNKY+EGYPG RYYGG E +D  E++ ++RA   F  +      NVQ  SG+ +N  VY AL+KP D ++ L L HGGHL+HG      KI+    F+    Y +N  T  ID
Sbjct:   15 NAPIAEADPEIAEILDAELSRQQNGLEMIASENFVPRAVLQAQGSVLTNKYAEGYPGRRYYGGCEQVDKIETIARERAKSLFGAE----YANVQPHSGAQANAAVYQALVKPGDTVLGLALDHGGHLTHG-----MKINFSGRFYHAEAYGVNPETFRID 165          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_THEYD (Serine hydroxymethyltransferase OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=glyA PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 7.785e-33
Identity = 75/160 (46.88%), Postives = 101/160 (63.12%), Query Frame = 1
Query:  217 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            L  VD EI  +I  EK R+   + +I SEN+ S +VM+A GS+ TNKY+EGYPG RYYGG EY D  E L Q+RA + F ++     VNVQ  SG+ +N  VY A+L+P D IM + L HGGHLSHG       ++     ++T+ Y +N+ TGYID D+
Sbjct:    6 LREVDAEIYSLILQEKKRETNKILMIASENYASRAVMEAQGSLFTNKYAEGYPGRRYYGGCEYADEVERLAQERAKQLFNVE----HVNVQPHSGTQANMAVYFAMLQPGDTIMGMSLTHGGHLSHG-----SPVNFTGKLYKTVFYGVNKETGYIDMDE 156          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_PARD8 (Serine hydroxymethyltransferase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=glyA PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 7.785e-33
Identity = 74/156 (47.44%), Postives = 98/156 (62.82%), Query Frame = 1
Query:  229 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            D  I DIIE E  RQ KG+ELI SENF S  VMQA+GS +TNKY+EGYPG RYYGG E +D +E++  +R  + F  +   W  NVQ  SG+ +N  V+ A+L P D  + L+L HGGHLSHG       +++  + +    Y + E TG +DYDQ
Sbjct:    4 DNIIFDIIEKEHQRQLKGIELIASENFVSDQVMQAMGSCLTNKYAEGYPGKRYYGGCEVVDQSETIAIERLKKLFNAE---W-ANVQPHSGAQANAAVFFAVLNPGDTFLGLNLSHGGHLSHG-----SPVNSSGVLYHATEYNVKEDTGRVDYDQ 150          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_BIFLI (Serine hydroxymethyltransferase OS=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / NCTC 11817 / S12) GN=glyA PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 7.785e-33
Identity = 76/160 (47.50%), Postives = 101/160 (63.12%), Query Frame = 1
Query:  208 NAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYID 687
            NAP+   DPEIA++++ E  RQ  GLE+I SENF   +V+Q  GSV+TNKY+EGYPG RYYGG EY+D  E++ ++RA   F  +     VNVQ  SG+ +N  VY AL+KP D ++ L L HGGHL+HG      KI+    F+    Y +N  T  ID
Sbjct:   15 NAPICETDPEIAELLDSELGRQRNGLEMIASENFVPRAVLQCQGSVLTNKYAEGYPGHRYYGGCEYVDQIETIARERAKALFGAE----YVNVQPHSGAQANAAVYQALVKPGDTVLGLALDHGGHLTHG-----MKINFSGRFYHAEAYGVNPVTFRID 165          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_ACIC5 (Serine hydroxymethyltransferase OS=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) GN=glyA PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 7.785e-33
Identity = 72/165 (43.64%), Postives = 104/165 (63.03%), Query Frame = 1
Query:  202 QLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            +++  L   DP++A  I+HE  RQ +GLE+I SENF S +V++A GSV TNKY+EGYPG RYYGG E+ D+ E+L + RA + F  +      NVQ  SGS +N   Y ++++P D I+ LDL HGGHL+HG+     K++     +    Y + + T  IDYD+
Sbjct:    4 RMSLSLAQSDPDVAAAIDHEVLRQHEGLEMIASENFVSRAVLEAAGSVFTNKYAEGYPGRRYYGGCEFADVVENLARDRAKQLFGAE----HANVQPHSGSQANAAAYMSIIQPGDTILGLDLAHGGHLTHGH-----KLNFSGKLYRVASYGVRKDTETIDYDE 159          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA1_HAHCH (Serine hydroxymethyltransferase 1 OS=Hahella chejuensis (strain KCTC 2396) GN=glyA1 PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 7.785e-33
Identity = 78/156 (50.00%), Postives = 96/156 (61.54%), Query Frame = 1
Query:  229 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            DPE++  I  EK RQ + +ELI SEN+ S  VM+A G V+TNKY+EGYPG RYYGG E++D+AE L   RA + F  D      NVQ  SGS +N  VY AL KP D I+ + L HGGHL+HG      K +     F  + Y LN  TG IDYDQ
Sbjct:   12 DPELSAAINAEKRRQEEHIELIASENYVSPRVMEAQGGVLTNKYAEGYPGKRYYGGCEHVDVAEQLAIDRAKQLFGAD----YANVQPHSGSQANAGVYLALAKPGDTILGMSLDHGGHLTHG-----AKPNFSGKIFNAVQYGLNPETGEIDYDQ 158          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_KLEP7 (Serine hydroxymethyltransferase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=glyA PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.017e-32
Identity = 77/155 (49.68%), Postives = 99/155 (63.87%), Query Frame = 1
Query:  229 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYD 693
            D E+   +E EK RQ + +ELI SEN+TS  VMQA GS +TNKY+EGYPG RYYGG EY+D+ E L   RA E F  D      NVQ  SGS +NF VYTALL+P D ++ ++L  GGHL+HG       ++     +  +PY ++ES G IDYD
Sbjct:   12 DAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGAD----YANVQPHSGSQANFAVYTALLQPGDTVLGMNLAQGGHLTHG-----SPVNFSGKLYNIIPYGIDES-GKIDYD 156          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_KLEP3 (Serine hydroxymethyltransferase OS=Klebsiella pneumoniae (strain 342) GN=glyA PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.017e-32
Identity = 77/155 (49.68%), Postives = 99/155 (63.87%), Query Frame = 1
Query:  229 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYD 693
            D E+   +E EK RQ + +ELI SEN+TS  VMQA GS +TNKY+EGYPG RYYGG EY+D+ E L   RA E F  D      NVQ  SGS +NF VYTALL+P D ++ ++L  GGHL+HG       ++     +  +PY ++ES G IDYD
Sbjct:   12 DAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGAD----YANVQPHSGSQANFAVYTALLQPGDTVLGMNLAQGGHLTHG-----SPVNFSGKLYNIIPYGIDES-GKIDYD 156          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_HELMI (Serine hydroxymethyltransferase OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=glyA PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.017e-32
Identity = 73/160 (45.62%), Postives = 100/160 (62.50%), Query Frame = 1
Query:  217 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            L  VDPE+A  ++ EK RQ   +ELI SENF S +VM+A GSV+TNKY+EGYPG RYYGG E++D  E L  +RA   F  +      NVQ  SG+ +N  VY A L+P D ++ ++L HGGHL+HG       ++    +F  + Y ++  TG IDYD+
Sbjct:    7 LHQVDPEVAAAMDREKKRQKNNIELIASENFVSEAVMEAAGSVLTNKYAEGYPGKRYYGGCEFVDQVERLAIERAKRLFGAE----HANVQPHSGANANMGVYFACLEPGDTVLGMNLAHGGHLTHG-----SPVNISGKYFRFVAYGVDAHTGRIDYDE 157          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_ECOLU (Serine hydroxymethyltransferase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=glyA PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.017e-32
Identity = 75/154 (48.70%), Postives = 100/154 (64.94%), Query Frame = 1
Query:  229 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDY 690
            D E+   +E EK RQ + +ELI SEN+TS  VMQA GS +TNKY+EGYPG RYYGG EY+D+ E L   RA E F  D      NVQ  SGS +NF VYTALL+P D ++ ++L HGGHL+HG       ++     +  +PY + +++G+IDY
Sbjct:   12 DAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFGAD----YANVQPHSGSQANFAVYTALLEPGDTVLGMNLAHGGHLTHG-----SPVNFSGKLYNIVPYGI-DASGHIDY 155          
The following BLAST results are available for this feature:
BLAST of FC868797 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_BIFAA5.961e-3347.50Serine hydroxymethyltransferase OS=Bifidobacterium... [more]
GLYA_THEYD7.785e-3346.88Serine hydroxymethyltransferase OS=Thermodesulfovi... [more]
GLYA_PARD87.785e-3347.44Serine hydroxymethyltransferase OS=Parabacteroides... [more]
GLYA_BIFLI7.785e-3347.50Serine hydroxymethyltransferase OS=Bifidobacterium... [more]
GLYA_ACIC57.785e-3343.64Serine hydroxymethyltransferase OS=Acidobacterium ... [more]
GLYA1_HAHCH7.785e-3350.00Serine hydroxymethyltransferase 1 OS=Hahella cheju... [more]
GLYA_KLEP71.017e-3249.68Serine hydroxymethyltransferase OS=Klebsiella pneu... [more]
GLYA_KLEP31.017e-3249.68Serine hydroxymethyltransferase OS=Klebsiella pneu... [more]
GLYA_HELMI1.017e-3245.63Serine hydroxymethyltransferase OS=Heliobacterium ... [more]
GLYA_ECOLU1.017e-3248.70Serine hydroxymethyltransferase OS=Escherichia col... [more]

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Properties
Property NameValue
Genbank descriptionC31004H06EF AbioticL1 Citrus clementina cDNA clone C31004H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868797 ID=FC868797; Name=FC868797; organism=Citrus clementina; type=EST; length=697bp
AACAAAGAAGAAACAGAACAACATCTTGCAGCGGGAGAGTGAGAAGCAAA
AATGGCCATGGCTCTGGCTCTTCGCAGGCTCTCATCTTCCCTCGACAAAC
CCACTCGTCCTCTCTTCAATGGCTCCTCCCTCTACTACATGTCATCTTTG
CCAAATGAAGCTGTTTACGAGAAAGAGAAAAATGGTGTCACTTGGCCAAA
ACAACTGAATGCTCCACTTGAGGTCGTTGATCCTGAGATTGCTGACATTA
TCGAGCATGAAAAAGCACGACAATGGAAGGGACTTGAACTCATTCCTTCA
GAGAACTTTACTTCAGTATCCGTGATGCAAGCTGTGGGGTCTGTCATGAC
CAACAAGTACAGTGAAGGATATCCAGGTGCAAGATATTATGGAGGAAACG
AGTATATTGACATGGCGGAATCCTTATGTCAGAAGCGAGCTCTGGAAGCA
TTTCGGTTGGATCCTGAAAAATGGGGAGTGAATGTGCAGTCTCTGTCTGG
ATCTCCATCTAATTTTCAAGTCTACACTGCATTGTTAAAACCTCATGATA
GGATCATGGCACTTGATCTTCCTCATGGTGGGCATCTCTCACACGGCTAT
CAGACAGATACCAAAAAGATATCTGCAGTGTCCATATTTTTTGAGACAAT
GCCATACAGATTGAATGAGAGCACTGGCTATATAGACTATGACCAGT
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